Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 181 1e-40 seq20 123 3e-23 seq17 120 4e-22 seq22 118 1e-21 seq190 93.3 6e-14 seq60 87.8 2e-12 >seq3 Length=37708006 Score = 181 bits (200), Expect = 1e-40 Identities = 165/208 (79%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| ||||||||| | ||||||||| | |||| ||||||| |||||||||||| | ||| Sbjct 8420793 TTACTTCTTATTAACTGCTTCCAAAAACCGTAAGAGATGCAGGAACAGATTGATAACATC 8420852 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 ||| |||| |||| | ||||| ||||| |||||||| || || ||||| || || || Sbjct 8420853 CAAATAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGTTTATGCATCAGGGA 8420912 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| || |||||||| ||||| ||||| || | |||||| || | ||||| |||||||| Sbjct 8420913 GTGTGTATCATAGATGATGAAACCGCAAAAAAGAAGGGCTCCCACTGCAGAAAGGACCAG 8420972 Query 9407 CTCCACTGTTTCACTTTGCACAAATATC 9434 ||||||||| |||| | | ||||||| Sbjct 8420973 CTCCACTGTCGCACTATAAAAAAATATC 8421000 Score = 147 bits (162), Expect = 3e-30 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| ||||||||||||||| |||||| | ||||| Sbjct 8429510 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATACAGTCAAACCAAGA 8429569 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || |||||||| | ||| | || ||||||||||||||||| Sbjct 8429570 AATACTGCAGTAGTCAGTATAAAAGCTTGTAGAACAATATATACATCATAGAAAGTAAC 8429628 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| |||||||||||||| ||||||||||||||||||| ||||||| Sbjct 8440829 CCATGCGGATGTGCACGCTGGCAGACGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 8440888 Query 9907 TGGAGGAGCA 9916 |||| ||||| Sbjct 8440889 TGGACGAGCA 8440898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 ||||||| | |||||||| | || |||||||| |||||||||| ||||||||||||||| Sbjct 8433160 AAATCCAAATAGCAGGTAGAGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCAATGCGAA 8433219 Query 9692 AATCAAGCCTATAGAT 9707 |||||| || | |||| Sbjct 8433220 AATCAAACCCAAAGAT 8433235 >seq20 Length=25211774 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | || |||||||||||||| || ||||| || || ||||| | Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| ||||| || || ||||||||||| ||||| || || || ||||||| Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600 Query 36300 CAATAAGTCTCTCTCC 36315 | | || || ||||| Sbjct 21308601 CTACAACTCGTTCTCC 21308616 >seq17 Length=26966924 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| ||||| | ||| || Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| |||||||| ||||||| |||||||||||| |||||||| Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGC 9450884 >seq22 Length=17426531 Score = 118 bits (130), Expect = 1e-21 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 65290 |||||||||||||||| || ||||||||||| ||||| ||||| || || Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 1398154 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || |||||| ||| | || ||||| |||||||| | Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| ||||||||||| ||||| || || || || || ||||| || | | || | Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||| ||||||| | | || | ||| || |||| Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 ||||||| | ||| |||||||||||||||| || || || || || || || || | | Sbjct 1425065 CACTAAACACTTTCTTTGTTTCTTTGTGTAAGTTGGAGACTGCAATCCTTGCTGCCAAGA 1425124 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || ||||| | ||||| | ||||| ||| | || || || | || |||| Sbjct 1425125 TGGCATAGTCAGGATGCTTAGTAGTCAAGGTGGCAGCTGTCTCAGCAGCTAATGTATCCA 1425184 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 ||| ||||| || || ||| | || | |||||||| |||||||| | |||| Sbjct 1425185 GTTCCACCGTAGTGACCCCACTGTAGAGGCCTTGGATTACCTTCATGGTGATTT 1425238 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| || ||||| |||||||||||||| | || | |||||||| | Sbjct 1409097 CTCCACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 1409156 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 1409157 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 1409216 Query 66176 CGGTTCCAAGTATATGGC 66193 ||||| | ||| || || Sbjct 1409217 AGGTTCTAGGTAAATAGC 1409234 >seq190 Length=3085523 Score = 93.3 bits (102), Expect = 6e-14 Identities = 145/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 33948 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 34007 ||| ||||||| | |||||||||| | | ||| | | || |||||||| |||| ||| Sbjct 695275 TTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATC 695334 Query 34008 CCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 34067 ||| | || || | ||| | ||| || ||| | | || || || | |||||| Sbjct 695335 ACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCC 695394 Query 34068 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACC 34124 |||||||||||| ||||| ||||| |||||| ||| || |||| | || || Sbjct 695395 CCTATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCC 695454 Query 34125 AGACCTAGGAGCTATTCTACCATAGCA 34151 ||| | ||||||| ||| |||||||| Sbjct 695455 AGAACGTGGAGCTACTCTTCCATAGCA 695481 >seq60 Length=10670342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 173/250 (69%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATAT-CCAA 9289 || |||||| |||||||||| | ||| || || | |||| |||| | || |||| Sbjct 2134192 TTTTTATTAACTACTTCCAAACCCA-TAAGGCATTCAGGGACAGGATGATAAAATTCCAA 2134134 Query 9290 GTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTG 9349 ||||| ||||| || || ||||| | |||||| || || ||||| || | | |||| Sbjct 2134133 GTAGAGGTTGATGTCAGCCAAGACATACTTTTCAGGTGATAGTTTATGCATCAATAAGTG 2134074 Query 9350 CGTGTCATAGATAAT--GAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 | ||| ||||| ||| | || | ||||| || | |||| ||||||||| Sbjct 2134073 AATATCACAGATATACAGAAACTTCAATGAAGAAGGGTTCCCACCACAGAAAGGACCAGC 2134014 Query 9408 TCCACTGTTTCA-CTTTGCACAAATATCCTCAAAAGTCCTGACAA-AATTAAAATCCACA 9465 |||||| || || | || | ||||| | |||| | | ||||||| || |||||||| | Sbjct 2134013 TCCACTATTGCACCATTTAAAAAATACCTTCAAGAATACTGACAAGCATAAAAATCCAGA 2133954 Query 9466 AAGTAACAAA 9475 || | |||| Sbjct 2133953 AAACAGCAAA 2133944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657636446758120