Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq3 181 1e-40
seq20 123 3e-23
seq17 120 4e-22
seq22 118 1e-21
seq190 93.3 6e-14
seq60 87.8 2e-12
>seq3
Length=37708006
Score = 181 bits (200), Expect = 1e-40
Identities = 165/208 (79%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286
||| ||||||||| | ||||||||| | |||| ||||||| |||||||||||| | |||
Sbjct 8420793 TTACTTCTTATTAACTGCTTCCAAAAACCGTAAGAGATGCAGGAACAGATTGATAACATC 8420852
Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346
||| |||| |||| | ||||| ||||| |||||||| || || ||||| || || ||
Sbjct 8420853 CAAATAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGTTTATGCATCAGGGA 8420912
Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406
||| || |||||||| ||||| ||||| || | |||||| || | ||||| ||||||||
Sbjct 8420913 GTGTGTATCATAGATGATGAAACCGCAAAAAAGAAGGGCTCCCACTGCAGAAAGGACCAG 8420972
Query 9407 CTCCACTGTTTCACTTTGCACAAATATC 9434
||||||||| |||| | | |||||||
Sbjct 8420973 CTCCACTGTCGCACTATAAAAAAATATC 8421000
Score = 147 bits (162), Expect = 3e-30
Identities = 104/119 (87%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| |||||||||||||| ||||||||||||||| |||||| | |||||
Sbjct 8429510 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATACAGTCAAACCAAGA 8429569
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| |||||||||||||| || |||||||| | ||| | || |||||||||||||||||
Sbjct 8429570 AATACTGCAGTAGTCAGTATAAAAGCTTGTAGAACAATATATACATCATAGAAAGTAAC 8429628
Score = 95.1 bits (104), Expect = 2e-14
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
|||| || |||||||| |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 8440829 CCATGCGGATGTGCACGCTGGCAGACGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 8440888
Query 9907 TGGAGGAGCA 9916
|||| |||||
Sbjct 8440889 TGGACGAGCA 8440898
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691
||||||| | |||||||| | || |||||||| |||||||||| |||||||||||||||
Sbjct 8433160 AAATCCAAATAGCAGGTAGAGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCAATGCGAA 8433219
Query 9692 AATCAAGCCTATAGAT 9707
|||||| || | ||||
Sbjct 8433220 AATCAAACCCAAAGAT 8433235
>seq20
Length=25211774
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||||||||| ||||| | || |||||||||||||| || ||||| || || ||||| |
Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| ||||| || || ||||||||||| ||||| || || || |||||||
Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600
Query 36300 CAATAAGTCTCTCTCC 36315
| | || || |||||
Sbjct 21308601 CTACAACTCGTTCTCC 21308616
>seq17
Length=26966924
Score = 120 bits (132), Expect = 4e-22
Identities = 98/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| ||||| || || | ||| |||||||| |||||||| ||||| ||||| | ||| ||
Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300
||||| ||||| | ||||| |||||||| ||||||| |||||||||||| ||||||||
Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGC 9450884
>seq22
Length=17426531
Score = 118 bits (130), Expect = 1e-21
Identities = 92/110 (84%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| |
Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 65290
|||||||||||||||| || ||||||||||| ||||| ||||| || ||
Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 1398154
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| ||||| || |||||||| || |||||| ||| | || ||||| |||||||| |
Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
||| ||| ||||||||||| ||||| || || || || || ||||| || | | || |
Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439
Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076
| || | |||||||| | ||| ||||||| | | || | ||| || ||||
Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490
Score = 107 bits (118), Expect = 3e-18
Identities = 128/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
||||||| | ||| |||||||||||||||| || || || || || || || || | |
Sbjct 1425065 CACTAAACACTTTCTTTGTTTCTTTGTGTAAGTTGGAGACTGCAATCCTTGCTGCCAAGA 1425124
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
||||||| || ||||| | ||||| | ||||| ||| | || || || | || ||||
Sbjct 1425125 TGGCATAGTCAGGATGCTTAGTAGTCAAGGTGGCAGCTGTCTCAGCAGCTAATGTATCCA 1425184
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972
||| ||||| || || ||| | || | |||||||| |||||||| | ||||
Sbjct 1425185 GTTCCACCGTAGTGACCCCACTGTAGAGGCCTTGGATTACCTTCATGGTGATTT 1425238
Score = 96.9 bits (106), Expect = 5e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| || ||||| |||||||||||||| | || | |||||||| |
Sbjct 1409097 CTCCACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 1409156
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
|| || || |||||||| ||||| || | ||| ||||| | | || || |||||||
Sbjct 1409157 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 1409216
Query 66176 CGGTTCCAAGTATATGGC 66193
||||| | ||| || ||
Sbjct 1409217 AGGTTCTAGGTAAATAGC 1409234
>seq190
Length=3085523
Score = 93.3 bits (102), Expect = 6e-14
Identities = 145/207 (70%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 33948 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 34007
||| ||||||| | |||||||||| | | ||| | | || |||||||| |||| |||
Sbjct 695275 TTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATC 695334
Query 34008 CCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 34067
||| | || || | ||| | ||| || ||| | | || || || | ||||||
Sbjct 695335 ACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCC 695394
Query 34068 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACC 34124
|||||||||||| ||||| ||||| |||||| ||| || |||| | || ||
Sbjct 695395 CCTATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCC 695454
Query 34125 AGACCTAGGAGCTATTCTACCATAGCA 34151
||| | ||||||| ||| ||||||||
Sbjct 695455 AGAACGTGGAGCTACTCTTCCATAGCA 695481
>seq60
Length=10670342
Score = 87.8 bits (96), Expect = 2e-12
Identities = 173/250 (69%), Gaps = 6/250 (2%)
Strand=Plus/Minus
Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATAT-CCAA 9289
|| |||||| |||||||||| | ||| || || | |||| |||| | || ||||
Sbjct 2134192 TTTTTATTAACTACTTCCAAACCCA-TAAGGCATTCAGGGACAGGATGATAAAATTCCAA 2134134
Query 9290 GTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTG 9349
||||| ||||| || || ||||| | |||||| || || ||||| || | | ||||
Sbjct 2134133 GTAGAGGTTGATGTCAGCCAAGACATACTTTTCAGGTGATAGTTTATGCATCAATAAGTG 2134074
Query 9350 CGTGTCATAGATAAT--GAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407
| ||| ||||| ||| | || | ||||| || | |||| |||||||||
Sbjct 2134073 AATATCACAGATATACAGAAACTTCAATGAAGAAGGGTTCCCACCACAGAAAGGACCAGC 2134014
Query 9408 TCCACTGTTTCA-CTTTGCACAAATATCCTCAAAAGTCCTGACAA-AATTAAAATCCACA 9465
|||||| || || | || | ||||| | |||| | | ||||||| || |||||||| |
Sbjct 2134013 TCCACTATTGCACCATTTAAAAAATACCTTCAAGAATACTGACAAGCATAAAAATCCAGA 2133954
Query 9466 AAGTAACAAA 9475
|| | ||||
Sbjct 2133953 AAACAGCAAA 2133944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657636446758120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |