Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq25 136 3e-27
seq228 102 7e-17
>seq25
Length=23434732
Score = 136 bits (150), Expect = 3e-27
Identities = 128/163 (79%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049
|||||| |||| ||| || |||| || || || |||||||||||||| ||||| || ||
Sbjct 21720716 CAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGG 21720657
Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109
|| || ||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 21720656 CACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCAC 21720597
Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152
||| || ||||| || | | || || ||||| || ||||||
Sbjct 21720596 CACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATC 21720554
>seq228
Length=2243194
Score = 102 bits (112), Expect = 7e-17
Identities = 191/281 (68%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022
|| || || || |||| || | || ||||| || ||||| || || ||||| | |
Sbjct 137346 TTTAAGGCTTCATCTAAACTTTTGGCCAGAAAATGAGCTCCTTGTGGGGGTTCCTTGAGT 137405
Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082
||||| || | || ||||||||||||| | | ||| || ||||| ||||| |||||
Sbjct 137406 TCTCTACTAAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 137465
Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142
||||| ||| | | |||||||| |||| ||||| || |||| | || | | || |
Sbjct 137466 AACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGTAGAGGTTGTG 137525
Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202
|||||| | | |||||| | | ||| | || || ||||| || | | || |||
Sbjct 137526 GTCATTCTTCGGAAATACTTGAATTCACTCCTGAGCGGGGGCCAGGGGAGGGCGCCATTT 137585
Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243
|| || || || | || | || || |||||||||||
Sbjct 137586 TTGCCGATGCCCATGTGCTGGGACACGGCCACGATGCAGTT 137626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427436114990640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |