Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq25 136 3e-27 seq228 102 7e-17 >seq25 Length=23434732 Score = 136 bits (150), Expect = 3e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 |||||| |||| ||| || |||| || || || |||||||||||||| ||||| || || Sbjct 21720716 CAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGG 21720657 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || ||||||||||| | |||||||||||||||||||||||||||||||| | Sbjct 21720656 CACACCCAGGCCCATGTCTCCAGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCAC 21720597 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||| || ||||| || | | || || ||||| || |||||| Sbjct 21720596 CACATAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATC 21720554 >seq228 Length=2243194 Score = 102 bits (112), Expect = 7e-17 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || || || |||| || | || ||||| || ||||| || || ||||| | | Sbjct 137346 TTTAAGGCTTCATCTAAACTTTTGGCCAGAAAATGAGCTCCTTGTGGGGGTTCCTTGAGT 137405 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||| | | ||| || ||||| ||||| ||||| Sbjct 137406 TCTCTACTAAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 137465 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| ||| | | |||||||| |||| ||||| || |||| | || | | || | Sbjct 137466 AACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTACTGTAGAGGTTGTG 137525 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||| | | |||||| | | ||| | || || ||||| || | | || ||| Sbjct 137526 GTCATTCTTCGGAAATACTTGAATTCACTCCTGAGCGGGGGCCAGGGGAGGGCGCCATTT 137585 Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243 || || || || | || | || || ||||||||||| Sbjct 137586 TTGCCGATGCCCATGTGCTGGGACACGGCCACGATGCAGTT 137626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427436114990640