Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq147 95.1 1e-14
seq66 87.8 2e-12
>seq147
Length=2532799
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608
||| | ||| | ||| | || |||||||| || ||||| || || | ||||
Sbjct 2384164 ACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCC 2384105
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
||||| ||||| || || || ||||||| | ||||| |||||||| ||||| |||||
Sbjct 2384104 ATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTT 2384045
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
|| ||| || || | | || | || || ||||||||||||| | ||| |
Sbjct 2384044 ATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAAT 2383985
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||||||||||| || || ||||| || ||||||
Sbjct 2383984 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 2383948
>seq66
Length=5789316
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| ||||| | ||| | || | ||| | || ||||| || || ||||| || ||
Sbjct 2649667 GCCACCTCGGAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2649608
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| || | ||||| ||||| || || ||| |||||| | |||||||| || ||
Sbjct 2649607 CAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGG 2649548
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||| || ||||| ||| || || | | || | ||||| ||||||||||
Sbjct 2649547 TATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 2649488
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | |||||||| |||| || || || || || |||||
Sbjct 2649487 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2649440
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606
||||| | || | ||| | || ||||| || || ||||| || || || || |
Sbjct 2649885 AAACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGG 2649826
Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666
||||| ||||| || || ||| ||||||| | ||||| || || || ||||||||
Sbjct 2649825 CCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 2649766
Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726
||||| ||| || || | | || | ||||| ||||||||||||| | |||
Sbjct 2649765 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 2649706
Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| |||||||| |||| || || ||||| || |||||
Sbjct 2649705 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495659751245600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |