Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq20 141 1e-28 seq22 120 4e-22 seq17 120 4e-22 seq190 96.9 5e-15 seq113 96.9 5e-15 seq83 87.8 3e-12 >seq20 Length=25211774 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| || || |||||||||||||| || ||||| || || ||||| | Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| ||||| || || ||||||||||||||||| || || |||||||||| Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| || ||||| Sbjct 21308601 CTACAACTCGTTCTCC 21308616 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/152 (73%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 49600 GCATTTATGTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GAC 49656 ||||| | ||| || | |||||| |||| | | ||| ||| ||| | || ||| Sbjct 21306504 GCATTCA-GTTCATTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGACTGGAC 21306562 Query 49657 ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCC 49716 || ||||||||| | || || || || || | || || || || ||||| || |||||| Sbjct 21306563 ATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCC 21306622 Query 49717 AATGATATATTTTCCATGAAATCAAACGGATT 49748 | ||| ||||| |||||||||||||| ||||| Sbjct 21306623 AGTGAAATATTCTCCATGAAATCAAATGGATT 21306654 >seq22 Length=17426531 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || ||||| |||||||| | Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| ||||||||||| ||||| || || || || || ||||| || | | || | Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||| ||||||| | | || | ||| || |||| Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490 Score = 109 bits (120), Expect = 8e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGC 79169 || ||||||||||||| || ||||||||||| || || ||||| || || Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 1398154 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| || ||||| |||||||||||||| | || |||||||||| | ||| Sbjct 1409101 ACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 1409160 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| ||| Sbjct 1409161 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGT 1409220 Query 80059 TCCAAGTATATGGC 80072 || | ||| || || Sbjct 1409221 TCTAGGTAAATAGC 1409234 >seq17 Length=26966924 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| ||||| | ||| || Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || ||||| ||||| | |||||||||||| |||||||| Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGCC 9450883 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 9450882 ACCACTCTTTCCCC 9450869 >seq190 Length=3085523 Score = 96.9 bits (106), Expect = 5e-15 Identities = 177/256 (69%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGA-TTGTACTTCCT 47761 |||||| || || || ||| | || || || ||| ||| | ||| ||| ||||| | Sbjct 695227 TCCAGTGGAACCCAAACCTCCTGAACCCCTTTCAGTATCATCCA-AGACTTGAACTTCTT 695285 Query 47762 CCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTA 47821 | | |||||||||| | | ||| | | || |||||||| |||| ||| ||| | || | Sbjct 695286 CAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCACCCTTTTTCA 695345 Query 47822 CATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 47881 | | || | ||| || ||| | | || || || | |||||||||||||||| Sbjct 695346 CTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCCCCTATAATCTT 695405 Query 47882 CGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAG 47938 | ||||| |||||| |||||| ||| || | |||| | || ||||| | |||| Sbjct 695406 CATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAG 695465 Query 47939 CTATTCTACCATAGCA 47954 ||| ||| |||||||| Sbjct 695466 CTACTCTTCCATAGCA 695481 >seq113 Length=6198913 Score = 96.9 bits (106), Expect = 5e-15 Identities = 177/255 (69%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 47705 CAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGA-TTGTACTTCCTCC 47763 |||| || ||||| ||| | || || || ||| ||| | ||| ||| ||||| || Sbjct 4701933 CAGTAGAACCAAAACCTCCTGAACCCCTTTCAGTATCATCCA-AGACTTGAACTTCTTCA 4701991 Query 47764 AGTTCTGGATAATATATAC-GTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||||||| | | | | | | || |||||||| |||| ||| ||| | || || Sbjct 4701992 ATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGATCACCCTTTTTCAC 4702051 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| ||| | | || || || | ||||||||||||||||| Sbjct 4702052 TTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTCCCCTATAATCTTC 4702111 Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939 ||||| |||||| |||||| |||||| | |||| | || ||| | | ||||| Sbjct 4702112 ATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGCCAAAACGTGGAGC 4702171 Query 47940 TATTCTACCATAGCA 47954 || ||| |||||||| Sbjct 4702172 TACTCTTCCATAGCA 4702186 >seq83 Length=9551901 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 47751 TTGTACTTCCTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 47810 ||| ||||| || | |||||||||| | || | | | || |||||||| ||||||| Sbjct 3111970 TTGAACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATT 3111911 Query 47811 TCCCGTATTTACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 47870 ||| | || || | ||| | ||| ||| ||| | | || || || | || || Sbjct 3111910 ACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCC 3111851 Query 47871 CCTATAATCTTCGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCC 47927 |||||||||||| | ||| |||||| |||||| ||| || | |||| | || || Sbjct 3111850 CCTATAATCTTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCC 3111791 Query 47928 AGACCTAGGAGCTATTCTACCATAGCA 47954 ||| | ||||||| ||| |||||||| Sbjct 3111790 AGAACGTGGAGCTACTCTTCCATAGCA 3111764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717683473776520