Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq20 141 1e-28
seq22 120 4e-22
seq17 120 4e-22
seq190 96.9 5e-15
seq113 96.9 5e-15
seq83 87.8 3e-12
>seq20
Length=25211774
Score = 141 bits (156), Expect = 1e-28
Identities = 113/136 (83%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||||||||| ||||| || || |||||||||||||| || ||||| || || ||||| |
Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| ||||| || || ||||||||||||||||| || || ||||||||||
Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600
Query 50102 CAACAAGTCTCTCTCC 50117
| |||| || |||||
Sbjct 21308601 CTACAACTCGTTCTCC 21308616
Score = 84.2 bits (92), Expect = 3e-11
Identities = 111/152 (73%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 49600 GCATTTATGTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GAC 49656
||||| | ||| || | |||||| |||| | | ||| ||| ||| | || |||
Sbjct 21306504 GCATTCA-GTTCATTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGACTGGAC 21306562
Query 49657 ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCC 49716
|| ||||||||| | || || || || || | || || || || ||||| || ||||||
Sbjct 21306563 ATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCC 21306622
Query 49717 AATGATATATTTTCCATGAAATCAAACGGATT 49748
| ||| ||||| |||||||||||||| |||||
Sbjct 21306623 AGTGAAATATTCTCCATGAAATCAAATGGATT 21306654
>seq22
Length=17426531
Score = 120 bits (132), Expect = 4e-22
Identities = 129/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844
|||| |||||||| |||||||| || |||||| ||| | || ||||| |||||||| |
Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379
Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904
||| ||| ||||||||||| ||||| || || || || || ||||| || | | || |
Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439
Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955
| || | |||||||| | ||| ||||||| | | || | ||| || ||||
Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490
Score = 109 bits (120), Expect = 8e-19
Identities = 90/110 (82%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| |
Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGC 79169
|| ||||||||||||| || ||||||||||| || || ||||| || ||
Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 1398154
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| || ||||| |||||||||||||| | || |||||||||| | |||
Sbjct 1409101 ACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 1409160
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| ||||| | | || || ||||||| |||
Sbjct 1409161 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGT 1409220
Query 80059 TCCAAGTATATGGC 80072
|| | ||| || ||
Sbjct 1409221 TCTAGGTAAATAGC 1409234
>seq17
Length=26966924
Score = 120 bits (132), Expect = 4e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| ||||| || || ||||| |||||||| |||||||| ||||| ||||| | ||| ||
Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||| ||||| | ||||| || ||||| ||||| | |||||||||||| ||||||||
Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGCC 9450883
Query 50104 ACAAGTCTCTCTCC 50117
|| | ||| || ||
Sbjct 9450882 ACCACTCTTTCCCC 9450869
>seq190
Length=3085523
Score = 96.9 bits (106), Expect = 5e-15
Identities = 177/256 (69%), Gaps = 5/256 (2%)
Strand=Plus/Plus
Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGA-TTGTACTTCCT 47761
|||||| || || || ||| | || || || ||| ||| | ||| ||| ||||| |
Sbjct 695227 TCCAGTGGAACCCAAACCTCCTGAACCCCTTTCAGTATCATCCA-AGACTTGAACTTCTT 695285
Query 47762 CCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTA 47821
| | |||||||||| | | ||| | | || |||||||| |||| ||| ||| | || |
Sbjct 695286 CAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCACCCTTTTTCA 695345
Query 47822 CATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 47881
| | || | ||| || ||| | | || || || | ||||||||||||||||
Sbjct 695346 CTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCCCCTATAATCTT 695405
Query 47882 CGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAG 47938
| ||||| |||||| |||||| ||| || | |||| | || ||||| | ||||
Sbjct 695406 CATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAG 695465
Query 47939 CTATTCTACCATAGCA 47954
||| ||| ||||||||
Sbjct 695466 CTACTCTTCCATAGCA 695481
>seq113
Length=6198913
Score = 96.9 bits (106), Expect = 5e-15
Identities = 177/255 (69%), Gaps = 6/255 (2%)
Strand=Plus/Plus
Query 47705 CAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGA-TTGTACTTCCTCC 47763
|||| || ||||| ||| | || || || ||| ||| | ||| ||| ||||| ||
Sbjct 4701933 CAGTAGAACCAAAACCTCCTGAACCCCTTTCAGTATCATCCA-AGACTTGAACTTCTTCA 4701991
Query 47764 AGTTCTGGATAATATATAC-GTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822
| |||||||||| | | | | | | || |||||||| |||| ||| ||| | || ||
Sbjct 4701992 ATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGATCACCCTTTTTCAC 4702051
Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882
| ||| | ||| ||| ||| | | || || || | |||||||||||||||||
Sbjct 4702052 TTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTCCCCTATAATCTTC 4702111
Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939
||||| |||||| |||||| |||||| | |||| | || ||| | | |||||
Sbjct 4702112 ATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGCCAAAACGTGGAGC 4702171
Query 47940 TATTCTACCATAGCA 47954
|| ||| ||||||||
Sbjct 4702172 TACTCTTCCATAGCA 4702186
>seq83
Length=9551901
Score = 87.8 bits (96), Expect = 3e-12
Identities = 144/207 (70%), Gaps = 3/207 (1%)
Strand=Plus/Minus
Query 47751 TTGTACTTCCTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 47810
||| ||||| || | |||||||||| | || | | | || |||||||| |||||||
Sbjct 3111970 TTGAACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATT 3111911
Query 47811 TCCCGTATTTACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 47870
||| | || || | ||| | ||| ||| ||| | | || || || | || ||
Sbjct 3111910 ACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCC 3111851
Query 47871 CCTATAATCTTCGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCC 47927
|||||||||||| | ||| |||||| |||||| ||| || | |||| | || ||
Sbjct 3111850 CCTATAATCTTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCC 3111791
Query 47928 AGACCTAGGAGCTATTCTACCATAGCA 47954
||| | ||||||| ||| ||||||||
Sbjct 3111790 AGAACGTGGAGCTACTCTTCCATAGCA 3111764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717683473776520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |