Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq20 102 8e-17 seq190 93.3 4e-14 seq17 93.3 4e-14 seq113 82.4 7e-11 >seq20 Length=25211774 Score = 102 bits (112), Expect = 8e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 21306560 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 21306619 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| ||||| ||||||||||||||| Sbjct 21306620 TCCAGTGAAATATTCTCCATGAAATCAAATGGATTT 21306655 >seq190 Length=3085523 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 11304 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATT 11363 ||| |||| || || |||||||| ||||| |||||| || | |||| |||| | Sbjct 695261 GTATCATCCAAGACTTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGC 695320 Query 11364 TGAGCCACCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATA 11423 ||||| | | ||| || |||| | | |||| | | ||| || ||| | |||||| Sbjct 695321 TGAGCAATTCCATCACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATA 695380 Query 11424 ACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11477 || |||| || |||||||||||||||||||| || || |||||| ||| ||| Sbjct 695381 ACACCAACATTTCCCCTATAATCTTCATCTATGACACCAGCTCCTACATCGATG 695434 >seq17 Length=26966924 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 |||||||| || || ||||| || ||||| || | ||| ||||| | |||| || ||| Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||| ||||| |||||||| || || || ||||| | ||| || ||||||||||| || Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGC 9450884 >seq113 Length=6198913 Score = 82.4 bits (90), Expect = 7e-11 Identities = 124/175 (71%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 11304 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTT-TCAAAAATAAT 11362 ||| |||| || || |||||||| ||||| |||||| | | | ||| ||| | Sbjct 4701965 GTATCATCCAAGACTTGAACTTCTTCAATTTCTGGATAAAAAAATCTGCTCACGAATGAG 4702024 Query 11363 TTGAGCCACCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATAT 11422 ||||| | ||||| || |||| | | ||| | | ||| ||| ||| | ||||| Sbjct 4702025 CTGAGCAATTCGATCACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAGCAATAT 4702084 Query 11423 AACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11477 ||| |||| || |||||||||||||||||||| || || |||||| ||| ||| Sbjct 4702085 AACACCAAAATTTCCCCTATAATCTTCATCTATGACACCAGCTCCTACATCAATG 4702139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479337063656200