Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq20 93.3 4e-14 seq17 93.3 4e-14 seq190 89.7 5e-13 >seq20 Length=25211774 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 21306560 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 21306619 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| ||||| ||||| ||||||||| Sbjct 21306620 TCCAGTGAAATATTCTCCATGAAATCAAATGGATTT 21306655 >seq17 Length=26966924 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 |||||||| || || ||||| || ||||| || | ||| ||||| | |||| || ||| Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | ||| ||||| ||||| || ||||| || ||||| | ||| || ||||||||||| || Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGC 9450884 >seq190 Length=3085523 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 11118 GTACCATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATT 11177 ||| |||| || || |||||||| ||||| |||||| || | |||| |||| | Sbjct 695261 GTATCATCCAAGACTTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGC 695320 Query 11178 TGTGCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACTATTATTAATAAATATA 11237 || || | || ||| || |||| | | |||| | | ||| | ||| | |||||| Sbjct 695321 TGAGCAATTCCATCACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATA 695380 Query 11238 ACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATG 11291 || |||| || |||||||||||||||||||| || || |||||| ||| ||| Sbjct 695381 ACACCAACATTTCCCCTATAATCTTCATCTATGACACCAGCTCCTACATCGATG 695434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478198792004520