Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_004037.2 Length=29576 Score E Sequences producing significant alignments: (Bits) Value seq4931 150 3e-32 >seq4931 Length=27746 Score = 150 bits (166), Expect = 3e-32 Identities = 184/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 16002 AACATTGGGGCTAGGTGGTCATTAGATGTTATGGATACTGTAAATCCATTTAATCACCAC 16061 ||||| || | ||||||||| ||||||| ||||| || || |||||||||||||| ||| Sbjct 16718 AACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCAC 16777 Query 16062 AGAAATTCAGGACTAAAGTATAGGTCACAACTGTTAGGAAATGGAAGATATTGCAGATTT 16121 |||||| | || | | ||| ||||| || || ||||||||||| | ||| ||| Sbjct 16778 AGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTT 16837 Query 16122 CACATTCAAGTACCTCAAAAATTTTTTCCTATAAAAAATCTTTTGTTGCTGCCAGGAACA 16181 || ||||| || || ||||| |||||| | | |||| | | | |||| || ||| | Sbjct 16838 CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCG 16897 Query 16182 TATAATTATGAATGGTACTTTAGAAAGGATCCCAACATGGTTTTTCAGTCTACTTTAGGT 16241 || | ||| ||||||| |||||||| ||| |||||| |||| ||| |||| | || Sbjct 16898 TACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGC 16957 Query 16242 AACGACCTTAG 16252 || || || || Sbjct 16958 AATGATCTGAG 16968 Score = 96.9 bits (106), Expect = 7e-16 Identities = 191/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 4603 GTTTCGCATTCAACCAACCAAGTTAGACATGGATGTTTTTCATCAAAGATTAAATTTGAG 4662 || || ||||| || ||||| |||| | |||| | ||||||||||||||||| | Sbjct 4977 GTCTCACATTCTACTAACCATGTTAAGGAAGGATCATGCTCATCAAAGATTAAATTATTG 5036 Query 4663 TTATATTTTTTAAGTCTATGTAATCCTTTTGATAACATGAGTTGGTGGCCCTTTTCTGTT 4722 | | || |||||||||||| ||||| | ||| ||| || || ||||||| Sbjct 5037 CTGTTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCTGTC 5096 Query 4723 AAGAATAACGAGTCTGTATCACCATAAATACTTTTTA----TCTCCCTTTCTATGTAAGG 4778 | ||| || ||| ||||| || ||||| ||||| ||| | | | |||| Sbjct 5097 ACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGTCC----CAAGG 5152 Query 4779 TTTACCCATATCTTCCCCATATAAAATTTCTGCCCACTCACTCATGAAAGCTCTGGTCCA 4838 | ||| |||||| |||||||| ||| ||||| || ||||||| | |||||| Sbjct 5153 TCGTCCCCAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCA 5212 Query 4839 AGCCAGCACAAAGGATGCTATCTGAGTTGGATATCGGTTGTT 4880 || || ||||| || || || || | ||| || ||||| || Sbjct 5213 GGCGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTATT 5254 Score = 86.0 bits (94), Expect = 1e-12 Identities = 267/408 (65%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 5383 TTCCATCCTCTATTGTGTAAGGTGATTAAATCGATAGAGGTCAGTACTTCATTTATCAAT 5442 |||||||||| ||| || || || || |||||| || || |||||| | | || Sbjct 5787 TTCCATCCTCGATTATGCAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAA 5846 Query 5443 GTTTCATTTGACCAGCATAACTTTCCACtttttttAGAACATAATGGAGGTAACACATCA 5502 ||||||||| |||||| | || | |||| | ||||| ||||| ||||| ||||| Sbjct 5847 TTTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCT 5906 Query 5503 AGATAATCTAATGATGGGGGTTCACAATCGGCTACCACAATCATAGGTTTGATTGAATTG 5562 | || ||| | |||| ||| ||| ||| ||||| ||| | | | | Sbjct 5907 AAGTATTCTTCGGCAGGGGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGGCAGGG 5966 Query 5563 TCAAAATAATCTATTTTTTCTTTTCTTTGTAGTAGTTCTTGAA-AGTAATCTATTTGTGC 5621 |||||||| ||||| || || | ||| ||||| | | || | | || Sbjct 5967 TCAAAATAGGAAATTTTGTCACCGGTTGCAAAGCGTT-TTGAATACTGATAGA---GAGC 6022 Query 5622 --ATTGGCT-TCAAAAGCATTTAAAGTTTTTCCATATGGAAGTGGATGCGTTAAGGCACT 5678 | | || ||||| | ||| | | | ||| | || | ||||||||||| || || Sbjct 6023 CAAGTTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCT 6082 Query 5679 AGCATACATTCCGCAGATATCATACACATATATTGCTTCTTCAAATATTCCTAAAAATGA 5738 |||||||||||| | |||||||| ||||| || | ||| ||||| | |||| | | Sbjct 6083 GGCATACATTCCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGT 6142 Query 5739 AGGATAACATCTTCCTCCTCTTAAACTCATTCTAACAAAATCATACAT 5786 || || || | ||| ||||| | || ||| ||||||||||| || Sbjct 6143 GGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAAT 6190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94448424508308