Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq17 125 1e-23 seq22 123 3e-23 seq20 123 3e-23 seq190 96.9 5e-15 seq113 91.5 2e-13 >seq17 Length=26966924 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| |||||||| ||||| ||||| | ||| || Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| |||||||| ||||| | |||||||||||| |||||||| Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGC 9450884 >seq22 Length=17426531 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||| || ||||||||||| ||||| ||||| || || | | || Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGCAGG 1398164 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 1398165 CTGTTTCTTATACCAT 1398180 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| |||| || || || || || | Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||||||||||| ||||| || || || || || ||||| || | | || | Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||| ||||||| | | || | ||| || |||| Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| || ||||| |||||||||||||| | || |||||||||| | ||| Sbjct 1409101 ACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 1409160 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| ||| Sbjct 1409161 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGT 1409220 Query 72142 TCCAAGTATATGGC 72155 || | ||| || || Sbjct 1409221 TCTAGGTAAATAGC 1409234 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| |||| || || || || || | | | |||||| |||||||| || || | Sbjct 1401754 GAGCCTTCATAGGTTTCATACGGGCCATACTCCTTGGCTAGGTCACAACTGGCTTCCAGG 1401813 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || ||||||||||| ||||| || || | |||||| | || ||||| || || ||| Sbjct 1401814 GCCCCATAATAAATAGTTTCAAAGATTTGCTTATTTAATAACTGAGCTTCTGGACTCTCA 1401873 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || || || | | || ||||| || ||||||| |||||||| ||||| || || || Sbjct 1401874 AAAGGGTATCTCATCAGGATAAAGGCATCTGCTAGACCTTGAACCCCAATTCCAATGGGG 1401933 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 1401934 CGATGGCGTTTATTTGA 1401950 >seq20 Length=25211774 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | || |||||||||||||| || ||||| || || ||||| | Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| ||||| || || ||||||||||||||||| || || || ||||||| Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||||| Sbjct 21308601 CTACAACTCGTTCTCC 21308616 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 41705 GCATTTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GAC 41761 ||||| | ||| || | |||||| |||| || | ||| ||| ||| | || ||| Sbjct 21306504 GCATTCA-GTTCATTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGACTGGAC 21306562 Query 41762 ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCC 41821 || ||||||||| | || || || || || | || || || || |||||||| |||||| Sbjct 21306563 ATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCC 21306622 Query 41822 AATGATATATTTTCCATGAAATCAAACGGATT 41853 | ||| ||||| |||||||||||||| ||||| Sbjct 21306623 AGTGAAATATTCTCCATGAAATCAAATGGATT 21306654 >seq190 Length=3085523 Score = 96.9 bits (106), Expect = 5e-15 Identities = 179/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGA-TTGTACTTCTT 39856 |||||| || || || ||| | || || || ||| ||| | ||| ||| ||||||| Sbjct 695227 TCCAGTGGAACCCAAACCTCCTGAACCCCTTTCAGTATCATCCA-AGACTTGAACTTCTT 695285 Query 39857 CCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTA 39916 | | |||||||||| | | ||| | | || |||||||| |||| ||| ||| | || | Sbjct 695286 CAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCACCCTTTTTCA 695345 Query 39917 CATTGAAAGTACATTTTC-CATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 39975 | || ||| | | ||| || ||| | | || || || | ||||||||||||||| Sbjct 695346 C-TTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCCCCTATAATCT 695404 Query 39976 TCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGA 40032 || ||||| ||||| |||||| ||| || |||| | || ||||| | ||| Sbjct 695405 TCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 695464 Query 40033 GCTATTCTACCATAGCA 40049 |||| ||| |||||||| Sbjct 695465 GCTACTCTTCCATAGCA 695481 >seq113 Length=6198913 Score = 91.5 bits (100), Expect = 2e-13 Identities = 178/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 39800 CAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGA-TTGTACTTCTTCC 39858 |||| || ||||| ||| | || || || ||| ||| | ||| ||| |||||||| Sbjct 4701933 CAGTAGAACCAAAACCTCCTGAACCCCTTTCAGTATCATCCA-AGACTTGAACTTCTTCA 4701991 Query 39859 AGTTCTGGATAATATATAC-GTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||||||| | | | | | | || |||||||| |||| ||| ||| | || || Sbjct 4701992 ATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGATCACCCTTTTTCAC 4702051 Query 39918 ATTGAAAGTACATTTT-CCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 39976 || ||| | | ||| ||| ||| | | || || || | |||||||||||||||| Sbjct 4702052 -TTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTCCCCTATAATCTT 4702110 Query 39977 CGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAG 40033 | ||||| ||||| |||||| |||||| |||| | || ||| | | |||| Sbjct 4702111 CATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGCCAAAACGTGGAG 4702170 Query 40034 CTATTCTACCATAGCA 40049 ||| ||| |||||||| Sbjct 4702171 CTACTCTTCCATAGCA 4702186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670592280276680