Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq17 125 1e-23
seq22 123 3e-23
seq20 123 3e-23
seq190 96.9 5e-15
seq113 91.5 2e-13
>seq17
Length=26966924
Score = 125 bits (138), Expect = 1e-23
Identities = 99/119 (83%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
|||||||| || || | ||| |||||||| |||||||| ||||| ||||| | ||| ||
Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207
||||| ||||||| ||||| |||||||| ||||| | |||||||||||| ||||||||
Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGC 9450884
>seq22
Length=17426531
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| |
Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
|||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||
Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGCAGG 1398164
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 1398165 CTGTTTCTTATACCAT 1398180
Score = 111 bits (122), Expect = 2e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| || |||||||| || |||||| |||| |||| || || || || || |
Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
||| |||||||||||||| ||||| || || || || || ||||| || | | || |
Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038
| || | |||||||| | ||| ||||||| | | || | ||| || ||||
Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||||||||| || ||||| |||||||||||||| | || |||||||||| | |||
Sbjct 1409101 ACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 1409160
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || |||||||| ||||| || | ||| ||||| | | || || ||||||| |||
Sbjct 1409161 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGT 1409220
Query 72142 TCCAAGTATATGGC 72155
|| | ||| || ||
Sbjct 1409221 TCTAGGTAAATAGC 1409234
Score = 95.1 bits (104), Expect = 2e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433
|| ||| |||| || || || || || | | | |||||| |||||||| || || |
Sbjct 1401754 GAGCCTTCATAGGTTTCATACGGGCCATACTCCTTGGCTAGGTCACAACTGGCTTCCAGG 1401813
Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493
|| ||||||||||| ||||| || || | |||||| | || ||||| || || |||
Sbjct 1401814 GCCCCATAATAAATAGTTTCAAAGATTTGCTTATTTAATAACTGAGCTTCTGGACTCTCA 1401873
Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553
|| || || | | || ||||| || ||||||| |||||||| ||||| || || ||
Sbjct 1401874 AAAGGGTATCTCATCAGGATAAAGGCATCTGCTAGACCTTGAACCCCAATTCCAATGGGG 1401933
Query 71554 CTGTGTCTCTTATTAGA 71570
| || | ||||| ||
Sbjct 1401934 CGATGGCGTTTATTTGA 1401950
>seq20
Length=25211774
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| ||||| | || |||||||||||||| || ||||| || || ||||| |
Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| ||||| || || ||||||||||||||||| || || || |||||||
Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600
Query 42207 CAATAAGTCTCTCTCC 42222
| | || || |||||
Sbjct 21308601 CTACAACTCGTTCTCC 21308616
Score = 93.3 bits (102), Expect = 6e-14
Identities = 113/152 (74%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 41705 GCATTTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GAC 41761
||||| | ||| || | |||||| |||| || | ||| ||| ||| | || |||
Sbjct 21306504 GCATTCA-GTTCATTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGACTGGAC 21306562
Query 41762 ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCC 41821
|| ||||||||| | || || || || || | || || || || |||||||| ||||||
Sbjct 21306563 ATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCC 21306622
Query 41822 AATGATATATTTTCCATGAAATCAAACGGATT 41853
| ||| ||||| |||||||||||||| |||||
Sbjct 21306623 AGTGAAATATTCTCCATGAAATCAAATGGATT 21306654
>seq190
Length=3085523
Score = 96.9 bits (106), Expect = 5e-15
Identities = 179/257 (70%), Gaps = 7/257 (3%)
Strand=Plus/Plus
Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGA-TTGTACTTCTT 39856
|||||| || || || ||| | || || || ||| ||| | ||| ||| |||||||
Sbjct 695227 TCCAGTGGAACCCAAACCTCCTGAACCCCTTTCAGTATCATCCA-AGACTTGAACTTCTT 695285
Query 39857 CCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTA 39916
| | |||||||||| | | ||| | | || |||||||| |||| ||| ||| | || |
Sbjct 695286 CAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCACCCTTTTTCA 695345
Query 39917 CATTGAAAGTACATTTTC-CATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 39975
| || ||| | | ||| || ||| | | || || || | |||||||||||||||
Sbjct 695346 C-TTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCCCCTATAATCT 695404
Query 39976 TCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGA 40032
|| ||||| ||||| |||||| ||| || |||| | || ||||| | |||
Sbjct 695405 TCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 695464
Query 40033 GCTATTCTACCATAGCA 40049
|||| ||| ||||||||
Sbjct 695465 GCTACTCTTCCATAGCA 695481
>seq113
Length=6198913
Score = 91.5 bits (100), Expect = 2e-13
Identities = 178/256 (70%), Gaps = 8/256 (3%)
Strand=Plus/Plus
Query 39800 CAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGA-TTGTACTTCTTCC 39858
|||| || ||||| ||| | || || || ||| ||| | ||| ||| ||||||||
Sbjct 4701933 CAGTAGAACCAAAACCTCCTGAACCCCTTTCAGTATCATCCA-AGACTTGAACTTCTTCA 4701991
Query 39859 AGTTCTGGATAATATATAC-GTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917
| |||||||||| | | | | | | || |||||||| |||| ||| ||| | || ||
Sbjct 4701992 ATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGATCACCCTTTTTCAC 4702051
Query 39918 ATTGAAAGTACATTTT-CCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 39976
|| ||| | | ||| ||| ||| | | || || || | ||||||||||||||||
Sbjct 4702052 -TTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTCCCCTATAATCTT 4702110
Query 39977 CGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAG 40033
| ||||| ||||| |||||| |||||| |||| | || ||| | | ||||
Sbjct 4702111 CATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGCCAAAACGTGGAG 4702170
Query 40034 CTATTCTACCATAGCA 40049
||| ||| ||||||||
Sbjct 4702171 CTACTCTTCCATAGCA 4702186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670592280276680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |