Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq17 96.9 3e-15
>seq17
Length=26966924
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || ||||| || |||| || |
Sbjct 9451004 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCT 9450945
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || || || || || | |||||| ||||| ||||| |
Sbjct 9450944 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGG 9450885
Query 13293 CTATCAACCTTTCACC 13308
| | || ||||| ||
Sbjct 9450884 CCACCACTCTTTCCCC 9450869
Score = 87.8 bits (96), Expect = 2e-12
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 12874 AACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAA 12933
||||| ||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 9459658 AACTCGTTTCTCAAAGAAGTTTGTTTTCCCTTCTAAAGAAATGTTTTCCATAAAATCAAA 9459599
Query 12934 AGGATTTT 12941
|||||||
Sbjct 9459598 GGGATTTT 9459591
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039
||||||||||| || ||||| || ||||||||||| ||| ||||||||||||| || |
Sbjct 9456734 AATCTGTCAGCTACGAACTCAATATACTGTTTCATCAAAACACAGTTCATTCCAATGAGG 9456675
Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065
|| |||| ||||||||| |||||
Sbjct 9456674 CCAACTGGCAAAGCTTCTGTCAAAAA 9456649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430639967378586
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |