Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq147 156 1e-32
seq91 150 4e-31
seq84 141 2e-28
seq36 132 1e-25
seq148 125 2e-23
seq1 125 2e-23
seq61 122 2e-22
seq8 111 4e-19
seq74 107 4e-18
seq20 95.1 3e-14
seq18 95.1 3e-14
seq25 89.7 1e-12
seq99 86.0 1e-11
>seq147
Length=2532799
Score = 156 bits (172), Expect = 1e-32
Identities = 175/234 (75%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || || || | || || || ||||| || || ||||||
Sbjct 2383950 ATACCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2383891
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| || || || || || || || |||||||| || ||||||
Sbjct 2383890 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGA 2383831
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || ||||||||||| ||||| || || ||||| || | |||||| || || ||
Sbjct 2383830 GGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCA 2383771
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|||||||| || || ||||| ||||| | || || || || ||||||||| ||
Sbjct 2383770 ACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTCTG 2383717
Score = 149 bits (164), Expect = 1e-30
Identities = 151/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| || || |||||||| ||||| | || ||||| || || || ||
Sbjct 2384145 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2384086
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || |||||||| || || ||||| || || ||||||||||| ||||| || ||
Sbjct 2384085 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 2384026
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| || || || ||||| || ||||| ||||| || || || ||
Sbjct 2384025 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTCAGGGTC 2383966
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 2383965 TTCACGAAGATCTGCAT 2383949
>seq91
Length=4965619
Score = 150 bits (166), Expect = 4e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|| || | ||||||||| | || || || || || || || |||||||||| ||||
Sbjct 1585558 AGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGT 1585617
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| || || || |||||||| || || || || |||||||| | ||||||||
Sbjct 1585618 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCC 1585677
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|||||||| ||||| || ||||||||||| | ||||| ||||| |||| |||||
Sbjct 1585678 TTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTG 1585737
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || ||||| ||||| | || ||||||||
Sbjct 1585738 ATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775
>seq84
Length=7487594
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|| || | ||||||||| | || || || || ||||| || | ||||||| ||| |
Sbjct 757427 AGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAATCAGATAAAGTACAT 757486
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||| | || || || |||||||| |||| || || ||||||||||| ||||||||
Sbjct 757487 CCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTCC 757546
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|||||||| ||||| || ||||||||||||| ||||| ||||| || | ||| |
Sbjct 757547 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACATTGAGTATG 757606
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || ||||| ||||| | || |||| |||
Sbjct 757607 ATGGTTTTCCCCGTAAGGGTTTTGATGAAAATCTTCAT 757644
>seq36
Length=17049061
Score = 132 bits (146), Expect = 1e-25
Identities = 150/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| |||||||| || || |||||||| ||||| || ||||| | || || ||
Sbjct 7362839 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCACCTGCTTGCCT 7362898
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || |||||||| || |||||||| || || ||||||||||| ||||| || ||
Sbjct 7362899 GCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGGCCTTC 7362958
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | |||||| | || || ||||| || |||| ||||| || || || ||
Sbjct 7362959 ACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGGATAATGGTCTTGCCGGTCAGGGTC 7363018
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| | || ||||||||| ||
Sbjct 7363019 TTCATGAAGATCTGCATTCTG 7363039
Score = 120 bits (132), Expect = 7e-22
Identities = 149/199 (75%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || || ||||| || |||||||||| || | | || ||||| || || |||||
Sbjct 13827147 GTAGACTCCTTTTGAATGTTGTAGTCAGATA-AGGTATTCCATCTTCCAGCTGCTTTCCC 13827205
Query 104423 G-CAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481
| |||| || || || |||||| ||||| | ||||| ||||| | ||| ||||| || ||
Sbjct 13827206 GGCAAAGATCAGTCTTTGTTGACCAGGAAGAATTCCATCTTTCTTCTGGATCTTGGCCTT 13827265
Query 104482 TACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540
||||||||||| |||||| | || || |||| || || || ||||| | | ||| |
Sbjct 13827266 TACATTTTCTATGGTATC-CAAGACTTTAACCTTGAGGGTGATGGTCTTCCTTGAAAGGG 13827324
Query 104541 TTTTTACAAATATCTGCAT 104559
|||| || ||||||||
Sbjct 13827325 TTTTGGTGAAAATCTGCAT 13827343
>seq148
Length=5416653
Score = 125 bits (138), Expect = 2e-23
Identities = 140/186 (75%), Gaps = 1/186 (1%)
Strand=Plus/Plus
Query 104375 TGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGC 104434
||||| || ||| |||| | | | || | ||| || || || |||||||| || ||
Sbjct 991079 TGAATGTTGCAGTTGGATAAAATACGTCCATATTCCAGCTGCTTACCAGCAAAGATCAGT 991138
Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACG 104494
|| || |||||||| || |||||||| |||||||| ||||| || |||||||||||||
Sbjct 991139 CTTTGCTGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATA 991198
Query 104495 GTATCGCTAGGTTCTACCTCTAG-TGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553
||||| ||||| || || || | | || || || || ||||| ||||| ||||| ||
Sbjct 991199 GTATCTGAGGGTTCAACTTCGAGTTATGATGGTTTTCCCCGTAAGGGTTTTGACAAAAAT 991258
Query 104554 CTGCAT 104559
||||||
Sbjct 991259 CTGCAT 991264
>seq1
Length=68039765
Score = 125 bits (138), Expect = 2e-23
Identities = 154/209 (74%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||||||| | || || || || || || || ||||||||| || | || | |||
Sbjct 38753655 ACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTACGTCCATTTTCC 38753596
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|| || || ||| |||| || || || || ||||||||||| |||||||| |||||||||
Sbjct 38753595 AGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 38753536
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| | |||||||||| | ||||| | ||||| |||| || | |||||
Sbjct 38753535 ATCTTGACCTTTACATTTTGTGTAGTATCTCAGGGTTCCGCCTCAAGCATGGCGGTCTT- 38753477
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||| ||||| ||||| ||||||||
Sbjct 38753476 CCCCTAAGGGTTTTGACAAAAATCTGCAT 38753448
>seq61
Length=10587387
Score = 122 bits (134), Expect = 2e-22
Identities = 136/180 (76%), Gaps = 4/180 (2%)
Strand=Plus/Plus
Query 104352 CTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTA 104411
||||||| || || | || || ||||| || |||||||||| ||| | || ||||| |
Sbjct 1945094 CTAGATGAAAAGTGGGCTCCTTTTGAATGTTGTAGTCAGATAAAGTACATCCATCTTCCA 1945153
Query 104412 GTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA 104471
| || || |||||||| | | ||||| ||||||||||| |||||||| |||||||| |
Sbjct 1945154 GCTGCTTACCAGCAAAGGTCA--CTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 1945211
Query 104472 TCTTTGCTTTTACATTTTCTACGGTATCGCT--AGGTTCTACCTCTAGTGTAATAGTCTT 104529
|||| || |||| ||| | | ||||| || ||||| |||| |||||||| || ||
Sbjct 1945212 TCTTGGCCTTTATATTGTGTTTAGTATCTCTGAGGGTTCAGCCTCGAGTGTAATGGTTTT 1945271
>seq8
Length=36468567
Score = 111 bits (122), Expect = 4e-19
Identities = 151/209 (72%), Gaps = 9/209 (4%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||||||| | ||||| | || ||||| || |||||||||| | | || |||||
Sbjct 5938684 ACTAGATGAACAGTAGACTACTTTTGAATGTTGTAGTCAGATAAAATATGTCCATCTTCC 5938743
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || |||||| || | | |||||||||| ||||||| ||| ||||
Sbjct 5938744 AGTTGCTTACCAGCA----TT----TTTTCTGATCAGGAGAAATTCCTTTCTTACCCTGG 5938795
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| |||||| |||| |||| ||||| || ||||
Sbjct 5938796 ATCTTGGCCTTTACATTTTCTATGGTATCCAGGAGTTCAACCTGGAGTGTGATGCTCTTC 5938855
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||| ||||| | ||| || |||||
Sbjct 5938856 CCCATAAGGGTTTTGATAAA-ATATGCAT 5938883
>seq74
Length=6199102
Score = 107 bits (118), Expect = 4e-18
Identities = 145/201 (72%), Gaps = 1/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || ||||| | ||||||| || ||| | || ||||| || | || ||
Sbjct 2523011 GTGGACTCCTTTTGAATGCTGTAGTCAG-TAAAGTACATCCATCTTCCAGCCGCTTACCT 2523069
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || || || ||||||| ||| |||||||| ||| || | ||||| || ||
Sbjct 2523070 GCAAAGATCAGGCTTTGCTGATCAGAAGGAATTCCTTCCTTAGCCCGGATCTTGGCCATT 2523129
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||||| ||||| || || || || ||||| || ||||| || |||| ||
Sbjct 2523130 ACATTTTCTATAGTATCCAAGGGCTCAACTTCCAGTGTGATGGTCTTCCCTATAAGGATT 2523189
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || |||||||| |||
Sbjct 2523190 TTGCTGAAAATCTGCATCTTG 2523210
>seq20
Length=25211774
Score = 95.1 bits (104), Expect = 3e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551
|| |||||||| ||| ||| ||||||||||| ||| | ||||| ||| |||| |||||
Sbjct 21306660 GTAGAAAATCCATTTGATTTCATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 21306601
Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611
|||||| | ||| | | ||||||| |||||| || ||||| | | | ||| ||| |
Sbjct 21306600 GAGAAGAGAGTAGGCGAGTATCAGAGAATGGGAGTGATGTCCAGTCCAACAGAGAATTCT 21306541
Query 269612 TTCACTACAGATGCAGAATTCT 269633
||||| ||||| || ||||
Sbjct 21306540 TTCACCTTGGATGCTGACTTCT 21306519
Score = 87.8 bits (96), Expect = 4e-12
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975
||||| ||||| || |||||||| | ||||| || || |||||||| || || |||||
Sbjct 21310874 CAAGAAGTACAAGTTACTGAAGCCCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 21310815
Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAA 269033
|| ||||| |||||||||||||| | || || || || || | ||| ||| ||||
Sbjct 21310814 ATACATTCCGAGATGTACAGTCTCCTGATTGACACGTACATCAAAGATCCCAAAGAAA 21310757
>seq18
Length=20386103
Score = 95.1 bits (104), Expect = 3e-14
Identities = 166/240 (69%), Gaps = 15/240 (6%)
Strand=Plus/Minus
Query 104322 CTTTATTTATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATA 104380
||||||||| || ||| || || | || | |||| | || || || || |||||
Sbjct 5141558 CTTTATTTAGCACCACCTTGAAGTCTCATTAGTTGATGAAGAGTGGAGTCCTTTTGAATG 5141499
Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440
|| ||| |||||| ||| | | ||| | || || || |||||||| || || || ||
Sbjct 5141498 TTGTAGACAGATAAAGTACATTCATCTCCCAGCTGCTTACCAGCAAAGATCAGTCTTTGC 5141439
Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500
||||||||||| || ||||| | |||| |||||||||| || | |||
Sbjct 5141438 TGATCAGGAGGAATGCCTTCCTCATCC------------TTTACATTTTGTATAGCATC- 5141392
Query 104501 CTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| ||| ||| ||||| ||||| || || || || |||| ||||| | || ||||||||
Sbjct 5141391 CAAGGCTTCAACCTCAAGTGTGATGGTTTTCCCTCTAAGGGTTTTGAAGAAAATCTGCAT 5141332
>seq25
Length=23434732
Score = 89.7 bits (98), Expect = 1e-12
Identities = 119/163 (73%), Gaps = 2/163 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||||| || |||| || |||| ||| || | || ||||||||||| || |||
Sbjct 9202314 GTAGATTTCTTTTGAAGGTTGTAGTAAGACTAAGCACGTCCATCTTCTAGTTGCTTACCA 9202255
Query 104423 GCAA-AAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTT 104480
|||| | | || | || |||||||||| ||||||| |||||||| || || || |
Sbjct 9202254 GCAAGAGACCAGTTTTTGCTGATCAGGAGAAATTCCTTGCTTATCCTGGATGTTGGGCCT 9202195
Query 104481 TTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523
| | ||||||| | ||||| | ||||| ||||| || |||||
Sbjct 9202194 TCATATTTTCTCCAGTATCTCAGGGTTCAACCTCAAGGGTAAT 9202152
>seq99
Length=8688090
Score = 86.0 bits (94), Expect = 1e-11
Identities = 99/132 (75%), Gaps = 1/132 (1%)
Strand=Plus/Plus
Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491
|| || || ||||||||||| || ||||| |||| ||| ||||| | |||||||||||||
Sbjct 7983702 AGTCTTTGCTGATCAGGAGGAATCCCTTCCTTATTCTGCATCTTGGGTTTTACATTTTCT 7983761
Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551
|||| | | ||| | || ||||| || |||| || ||||| |||| | ||||
Sbjct 7983762 GTAGTAT-GTGGGATTCAGCTTCCAGTGTGATGATCTTCCCTGTAAGGATTTTAAAAAAT 7983820
Query 104552 ATCTGCATTTTG 104563
||||| || |||
Sbjct 7983821 ATCTGTATCTTG 7983832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150436653827644
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |