Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq147 156 1e-32 seq91 150 4e-31 seq84 141 2e-28 seq36 132 1e-25 seq148 125 2e-23 seq1 125 2e-23 seq61 122 2e-22 seq8 111 4e-19 seq74 107 4e-18 seq20 95.1 3e-14 seq18 95.1 3e-14 seq25 89.7 1e-12 seq99 86.0 1e-11 >seq147 Length=2532799 Score = 156 bits (172), Expect = 1e-32 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || || ||||| || || |||||| Sbjct 2383950 ATACCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2383891 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || || || || |||||||| || |||||| Sbjct 2383890 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGA 2383831 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||||||||| ||||| || || ||||| || | |||||| || || || Sbjct 2383830 GGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCA 2383771 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||||||| || || ||||| ||||| | || || || || ||||||||| || Sbjct 2383770 ACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTCTG 2383717 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || |||||||| ||||| | || ||||| || || || || Sbjct 2384145 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2384086 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| || || ||||| || || ||||||||||| ||||| || || Sbjct 2384085 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 2384026 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || || ||||| || ||||| ||||| || || || || Sbjct 2384025 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTCAGGGTC 2383966 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2383965 TTCACGAAGATCTGCAT 2383949 >seq91 Length=4965619 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || | ||||||||| | || || || || || || || |||||||||| |||| Sbjct 1585558 AGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGT 1585617 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || |||||||| || || || || |||||||| | |||||||| Sbjct 1585618 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCC 1585677 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || ||||||||||| | ||||| ||||| |||| ||||| Sbjct 1585678 TTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTG 1585737 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| | || |||||||| Sbjct 1585738 ATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775 >seq84 Length=7487594 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || | ||||||||| | || || || || ||||| || | ||||||| ||| | Sbjct 757427 AGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAATCAGATAAAGTACAT 757486 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||| | || || || |||||||| |||| || || ||||||||||| |||||||| Sbjct 757487 CCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTCC 757546 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || ||||||||||||| ||||| ||||| || | ||| | Sbjct 757547 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACATTGAGTATG 757606 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| | || |||| ||| Sbjct 757607 ATGGTTTTCCCCGTAAGGGTTTTGATGAAAATCTTCAT 757644 >seq36 Length=17049061 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| |||||||| || || |||||||| ||||| || ||||| | || || || Sbjct 7362839 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCACCTGCTTGCCT 7362898 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| || |||||||| || || ||||||||||| ||||| || || Sbjct 7362899 GCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGGCCTTC 7362958 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | || || ||||| || |||| ||||| || || || || Sbjct 7362959 ACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGGATAATGGTCTTGCCGGTCAGGGTC 7363018 Query 104543 TTTACAAATATCTGCATTTTG 104563 || | || ||||||||| || Sbjct 7363019 TTCATGAAGATCTGCATTCTG 7363039 Score = 120 bits (132), Expect = 7e-22 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || ||||| || |||||||||| || | | || ||||| || || ||||| Sbjct 13827147 GTAGACTCCTTTTGAATGTTGTAGTCAGATA-AGGTATTCCATCTTCCAGCTGCTTTCCC 13827205 Query 104423 G-CAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 | |||| || || || |||||| ||||| | ||||| ||||| | ||| ||||| || || Sbjct 13827206 GGCAAAGATCAGTCTTTGTTGACCAGGAAGAATTCCATCTTTCTTCTGGATCTTGGCCTT 13827265 Query 104482 TACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 ||||||||||| |||||| | || || |||| || || || ||||| | | ||| | Sbjct 13827266 TACATTTTCTATGGTATC-CAAGACTTTAACCTTGAGGGTGATGGTCTTCCTTGAAAGGG 13827324 Query 104541 TTTTTACAAATATCTGCAT 104559 |||| || |||||||| Sbjct 13827325 TTTTGGTGAAAATCTGCAT 13827343 >seq148 Length=5416653 Score = 125 bits (138), Expect = 2e-23 Identities = 140/186 (75%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 104375 TGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGC 104434 ||||| || ||| |||| | | | || | ||| || || || |||||||| || || Sbjct 991079 TGAATGTTGCAGTTGGATAAAATACGTCCATATTCCAGCTGCTTACCAGCAAAGATCAGT 991138 Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACG 104494 || || |||||||| || |||||||| |||||||| ||||| || ||||||||||||| Sbjct 991139 CTTTGCTGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATA 991198 Query 104495 GTATCGCTAGGTTCTACCTCTAG-TGTAATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 ||||| ||||| || || || | | || || || || ||||| ||||| ||||| || Sbjct 991199 GTATCTGAGGGTTCAACTTCGAGTTATGATGGTTTTCCCCGTAAGGGTTTTGACAAAAAT 991258 Query 104554 CTGCAT 104559 |||||| Sbjct 991259 CTGCAT 991264 >seq1 Length=68039765 Score = 125 bits (138), Expect = 2e-23 Identities = 154/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || || || || ||||||||| || | || | ||| Sbjct 38753655 ACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTACGTCCATTTTCC 38753596 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || ||| |||| || || || || ||||||||||| |||||||| ||||||||| Sbjct 38753595 AGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGA 38753536 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| | |||||||||| | ||||| | ||||| |||| || | ||||| Sbjct 38753535 ATCTTGACCTTTACATTTTGTGTAGTATCTCAGGGTTCCGCCTCAAGCATGGCGGTCTT- 38753477 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||||| ||||| |||||||| Sbjct 38753476 CCCCTAAGGGTTTTGACAAAAATCTGCAT 38753448 >seq61 Length=10587387 Score = 122 bits (134), Expect = 2e-22 Identities = 136/180 (76%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 104352 CTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTA 104411 ||||||| || || | || || ||||| || |||||||||| ||| | || ||||| | Sbjct 1945094 CTAGATGAAAAGTGGGCTCCTTTTGAATGTTGTAGTCAGATAAAGTACATCCATCTTCCA 1945153 Query 104412 GTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA 104471 | || || |||||||| | | ||||| ||||||||||| |||||||| |||||||| | Sbjct 1945154 GCTGCTTACCAGCAAAGGTCA--CTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 1945211 Query 104472 TCTTTGCTTTTACATTTTCTACGGTATCGCT--AGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||| || |||| ||| | | ||||| || ||||| |||| |||||||| || || Sbjct 1945212 TCTTGGCCTTTATATTGTGTTTAGTATCTCTGAGGGTTCAGCCTCGAGTGTAATGGTTTT 1945271 >seq8 Length=36468567 Score = 111 bits (122), Expect = 4e-19 Identities = 151/209 (72%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | ||||| | || ||||| || |||||||||| | | || ||||| Sbjct 5938684 ACTAGATGAACAGTAGACTACTTTTGAATGTTGTAGTCAGATAAAATATGTCCATCTTCC 5938743 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||| || | | |||||||||| ||||||| ||| |||| Sbjct 5938744 AGTTGCTTACCAGCA----TT----TTTTCTGATCAGGAGAAATTCCTTTCTTACCCTGG 5938795 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| |||||| |||| |||| ||||| || |||| Sbjct 5938796 ATCTTGGCCTTTACATTTTCTATGGTATCCAGGAGTTCAACCTGGAGTGTGATGCTCTTC 5938855 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| ||||| | ||| || ||||| Sbjct 5938856 CCCATAAGGGTTTTGATAAA-ATATGCAT 5938883 >seq74 Length=6199102 Score = 107 bits (118), Expect = 4e-18 Identities = 145/201 (72%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| | ||||||| || ||| | || ||||| || | || || Sbjct 2523011 GTGGACTCCTTTTGAATGCTGTAGTCAG-TAAAGTACATCCATCTTCCAGCCGCTTACCT 2523069 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || || || ||||||| ||| |||||||| ||| || | ||||| || || Sbjct 2523070 GCAAAGATCAGGCTTTGCTGATCAGAAGGAATTCCTTCCTTAGCCCGGATCTTGGCCATT 2523129 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||||| ||||| || || || || ||||| || ||||| || |||| || Sbjct 2523130 ACATTTTCTATAGTATCCAAGGGCTCAACTTCCAGTGTGATGGTCTTCCCTATAAGGATT 2523189 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || |||||||| ||| Sbjct 2523190 TTGCTGAAAATCTGCATCTTG 2523210 >seq20 Length=25211774 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| ||| ||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 21306660 GTAGAAAATCCATTTGATTTCATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 21306601 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| |||||| || ||||| | | | ||| ||| | Sbjct 21306600 GAGAAGAGAGTAGGCGAGTATCAGAGAATGGGAGTGATGTCCAGTCCAACAGAGAATTCT 21306541 Query 269612 TTCACTACAGATGCAGAATTCT 269633 ||||| ||||| || |||| Sbjct 21306540 TTCACCTTGGATGCTGACTTCT 21306519 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| ||||| || |||||||| | ||||| || || |||||||| || || ||||| Sbjct 21310874 CAAGAAGTACAAGTTACTGAAGCCCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 21310815 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAA 269033 || ||||| |||||||||||||| | || || || || || | ||| ||| |||| Sbjct 21310814 ATACATTCCGAGATGTACAGTCTCCTGATTGACACGTACATCAAAGATCCCAAAGAAA 21310757 >seq18 Length=20386103 Score = 95.1 bits (104), Expect = 3e-14 Identities = 166/240 (69%), Gaps = 15/240 (6%) Strand=Plus/Minus Query 104322 CTTTATTTATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATA 104380 ||||||||| || ||| || || | || | |||| | || || || || ||||| Sbjct 5141558 CTTTATTTAGCACCACCTTGAAGTCTCATTAGTTGATGAAGAGTGGAGTCCTTTTGAATG 5141499 Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || ||| |||||| ||| | | ||| | || || || |||||||| || || || || Sbjct 5141498 TTGTAGACAGATAAAGTACATTCATCTCCCAGCTGCTTACCAGCAAAGATCAGTCTTTGC 5141439 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 ||||||||||| || ||||| | |||| |||||||||| || | ||| Sbjct 5141438 TGATCAGGAGGAATGCCTTCCTCATCC------------TTTACATTTTGTATAGCATC- 5141392 Query 104501 CTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| ||| ||||| ||||| || || || || |||| ||||| | || |||||||| Sbjct 5141391 CAAGGCTTCAACCTCAAGTGTGATGGTTTTCCCTCTAAGGGTTTTGAAGAAAATCTGCAT 5141332 >seq25 Length=23434732 Score = 89.7 bits (98), Expect = 1e-12 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||| || |||| || |||| ||| || | || ||||||||||| || ||| Sbjct 9202314 GTAGATTTCTTTTGAAGGTTGTAGTAAGACTAAGCACGTCCATCTTCTAGTTGCTTACCA 9202255 Query 104423 GCAA-AAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTT 104480 |||| | | || | || |||||||||| ||||||| |||||||| || || || | Sbjct 9202254 GCAAGAGACCAGTTTTTGCTGATCAGGAGAAATTCCTTGCTTATCCTGGATGTTGGGCCT 9202195 Query 104481 TTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523 | | ||||||| | ||||| | ||||| ||||| || ||||| Sbjct 9202194 TCATATTTTCTCCAGTATCTCAGGGTTCAACCTCAAGGGTAAT 9202152 >seq99 Length=8688090 Score = 86.0 bits (94), Expect = 1e-11 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || || || ||||||||||| || ||||| |||| ||| ||||| | ||||||||||||| Sbjct 7983702 AGTCTTTGCTGATCAGGAGGAATCCCTTCCTTATTCTGCATCTTGGGTTTTACATTTTCT 7983761 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 |||| | | ||| | || ||||| || |||| || ||||| |||| | |||| Sbjct 7983762 GTAGTAT-GTGGGATTCAGCTTCCAGTGTGATGATCTTCCCTGTAAGGATTTTAAAAAAT 7983820 Query 104552 ATCTGCATTTTG 104563 ||||| || ||| Sbjct 7983821 ATCTGTATCTTG 7983832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150436653827644