Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq35 100 3e-16 >seq35 Length=13989929 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| |||||||||||| || |||||| Sbjct 11962816 GGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACTTGCTGGAAGTGATG 11962757 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||| || || || || || ||||||| || || || ||||| |||||||| ||| Sbjct 11962756 CCCCAGGCAGAGAACCAGGGTCCAGACATCATGGAACATGTAAACTCCCTGGGAGAGAAG 11962697 Query 128994 CTCAA 128998 || || Sbjct 11962696 CTGAA 11962692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447385522602160