Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq25 109 4e-19 >seq25 Length=23434732 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| |||||||| |||| |||||||||||| || || || || || ||||| Sbjct 21716023 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAGGTC 21715964 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || |||| | | ||| ||| | |||||||| |||| ||| |||||||| || Sbjct 21715963 CCCTTCTTTTCGGGCAGAAAATCCCAGGCTGTCCAAAAAATCTCGGGATCCATTGGCATC 21715904 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| || || ||||| || || ||||||| ||||||||| || Sbjct 21715903 CCAGATTTTCACTCCCTTGGAAGACAGTTCTTTGGCGTTTGTGGATCC 21715856 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||| ||||| ||||| || || | |||||| Sbjct 21720700 GCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATG 21720641 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || || ||||||||||| ||||| || || ||||| | | ||| || ||||| || Sbjct 21720640 TCTCCA-GACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACATAGAACTGGCA 21720582 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | ||| ||||| || || || || Sbjct 21720581 GAGGGCATGGCAGGGAGGCAGCGCCATCAG 21720552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339867347177589