Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq165 87.8 2e-12 >seq165 Length=2883133 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561 ||| ||||||||| | ||||| || | || ||||||| || ||||| |||||||| | Sbjct 2393924 AGGTTGTAAACATGTTAAAGGCATCCTGTTGTATGGACCCCCAGGTTGTGGTAAAACTCT 2393983 Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGG 164618 ||||||| |||| |||| | |||||| | || || ||| | || ||||| Sbjct 2393984 CTTGGCTCGGCAGATTGG-CAAGATGTTAAATGCAAGAGAGCCC--AAAGTAGTCAATGG 2394040 Query 164619 TCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCA 164678 || ||| | | ||||||||||| || || ||||| ||||| || | || | ||| Sbjct 2394041 GCCAGAAATCCTTAACAAATATGTGGGAGAATCAGAGGCTAACATTCGCAAACTTTTTGC 2394100 Query 164679 GGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| || |||| || Sbjct 2394101 TGATGCTGAAGAGGAGCAAAGGA 2394123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595386416458800