Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_006144.1 Length=34246 Score E Sequences producing significant alignments: (Bits) Value seq4931 390 2e-104 >seq4931 Length=27746 Score = 390 bits (432), Expect = 2e-104 Identities = 871/1292 (67%), Gaps = 34/1292 (3%) Strand=Plus/Plus Query 19336 ATGGACAATGTTAATCCCTTTAACCACCACCGAAACGCCGGCCTCCGCTACCGCTCGATG 19395 ||||||| |||||||| ||||| || ||| |||| | || | | ||| | || | Sbjct 16748 ATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAG 16807 Query 19396 TTGCTGGGAAATGGTCGC-GTCGTGCCTTTCCACATTCAAGTGCCGCAAAAGTTTTTCGC 19454 | | |||||||||||| | | ||||| || ||||| || |||||||||||||| || Sbjct 16808 CTATTAGGAAATGGTCGCTATGCTTCCTTT-CATATTCAGGTTCCGCAAAAGTTTTTTGC 16866 Query 19455 GATTAAGAACCTCCTGCTTTTGCCCGGCTCCTACACCTACGAGTGGAGCTTCAGAAAAGA 19514 |||| | | || || | || || || |||| ||||| ||| || |||||||| Sbjct 16867 ACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGA 16926 Query 19515 CGTGAACATGATTCTACAGAGCACGCTGGGCAATGACCTGCGAGTCGACGGGGC--CAGC 19572 || ||||||||| | ||||| || || |||||||| ||| | | ||||| || ||| Sbjct 16927 TGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAG- 16985 Query 19573 GTTCGCA-TTGACAGCGTCAACCTGTACGCCAACTTTTTCCCCATGGCGCACAACACCGC 19631 | || |||||||| | | ||| | || | || || || ||| | || ||||| || Sbjct 16986 --TAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGC 17043 Query 19632 TTCCACCTTGGAGGCTATGCTGCGCAACGACACCAACGACCAGTCCTTTAACGACTACCT 19691 ||| || |||| ||||||| ||||| || ||||| |||||||| |||||| || Sbjct 17044 TTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCT 17103 Query 19692 ---CAGCGCGGCCAACATGCTGTACCCCATTCCTGCCAACGCCACCAAC-GTTCCCATCT 19747 |||| | |||||||| || | |||||| || | | |||| || || |||| Sbjct 17104 TTCCAGC---GTTAACATGCTTTATGCTATTCCT-CCGCATCAAACAACAGTGCCTATCT 17159 Query 19748 CCATCCCATCTCGCAACTGGGCGGCTTTTCGCGGCTGGAGCTTCACGCGCCTGAAGGCCA 19807 | || ||| | | || |||||||| ||| | || ||| || || | || || Sbjct 17160 CTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAAC 17219 Query 19808 AGGAAACTCCTTCCCTGGGTTCAGGTTTTGACCCCTACTTTGTGTACTCGGGCACTATTC 19867 ||||||| || || | || || | |||||||| |||||| |||||||||| | || | Sbjct 17220 AGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCC 17279 Query 19868 CCTACTTGGACGGGAGCTTTTACCTCAACCACACCTTCAAGCGTTTGTCCATCATGTTTG 19927 | || | ||| | || |||||| | ||||| ||| || |||| ||||| Sbjct 17280 CGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTG 17339 Query 19928 ACTCCTCTGTCAGTTGGCCAGGCAACGACCGCTTGCTGACCCCCAACGAATTTGAAATCA 19987 | || || || |||||||| || || ||| | | | | || || |||||| | || | Sbjct 17340 ATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAA 17399 Query 19988 AAAGGGTGGTCGACGGAGAGGGCTACAACGTGGCTCAGAGTAACATGACCAAAGACTGGT 20047 |||| | ||| |||| || ||||| ||| ||||||| | || || || || |||| Sbjct 17400 AAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGT 17459 Query 20048 TCTTAATCCAGATGCTCAGTCATTACAACATCGGCTATCAGGGATTTTACGTGCCCGAAG 20107 | || || |||||| ||| ||||| ||||| || || || ||| || | ||| || Sbjct 17460 ATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAG 17519 Query 20108 GGTACAAGGATCGCATGTACTCCTTCTTCAGAAACTTTCAGCCCATGAGCCGCCAGATCG 20167 || || ||| | |||| ||||| || ||||| ||| | |||||| | | || | | Sbjct 17520 ATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTG 17579 Query 20168 TGGATCCCACCTCAT-ACACGG---CTTACCAAGCGGTGGCCCTCCCGCATCAGCACAAC 20223 ||||| ||| | | |||| || ||| | || || || ||||||| || Sbjct 17580 TGGAT----CCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTTAAATATCAGCATAAT 17635 Query 20224 AACTCTGGTTTTGTGGGATACAT--GGGACCCACTATCAGAGAGGGGCAGCCGTACCCCG 20281 || || ||||| | | ||| |||||| | || | || || || || ||| Sbjct 17636 AATTCAGGTTT--TAAAAACCATTATGGACCCTTTGGGCGACAAGGCCATCCTTATCCCT 17693 Query 20282 CCAACTACCCCTACCCGCTCATTGGCGCTACTGCGGTGCCGGCCATTACTCAGAAAAAAT 20341 |||| || | ||||||||| || | || | |||||||||||| ||||| Sbjct 17694 GTAACTGGCCTTTCCCGCTCATCGGAGAACAGGCAGGTAAAACCATTACTCAGAGAAAAT 17753 Query 20342 TTTTGTGCGACCGCGTTCTGTGGCGCATCCCCTTCTCCAGCAATTTCATGTCCATGGGGG 20401 |||| || ||| | |||||| | || || |||||| ||| || ||||||||||| Sbjct 17754 TTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAA 17813 Query 20402 CTCTGACCGATCTCGGTCAAAACATGCTGTACGCCAACTCGGCGCACGCTCTTGATATGA 20461 | || || ||||| || ||||| |||| || || || || || || ||| | || |||| Sbjct 17814 CACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGA 17873 Query 20462 CTTTTGAGGTGGATCCCATGGACGAACCCAC---CCTCCTGTATATGCTTTTTGAGGTGT 20518 | | || || ||| | ||||| ||||| || ||| || ||||| ||||| || | Sbjct 17874 CAGTCGAAGTAGATTCAATGGAGGAACCAACTTATCTCATG---ATGCTATTTGAAGTAT 17930 Query 20519 TCGACGTGGTCAGAGTGCACCAGCCACACCGCGGTATCATCGAGGCCGTGTACCTGCGTA 20578 | ||| || ||||||||| ||||| || || ||| |||| || | | || || | | Sbjct 17931 TTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAA 17990 Query 20579 CCCCATTCTCTGCGGGCAATGCCACCACATAA 20610 |||| || || || || || ||| | |||||| Sbjct 17991 CCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022 Score = 181 bits (200), Expect = 2e-41 Identities = 222/303 (73%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 18712 CAGCAAGCCGCTCCAAATAGGCCGAATTATATTGGTTTTAGGGATAACTTCATTGGATTT 18771 |||||| ||| ||||| ||||| |||||||| ||||||||||||||||| || || || Sbjct 16133 CAGCAAAGCGCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTA 16192 Query 18772 ATGTATTACAACAGCACTGGAAACATGGGAGTACTTGCAGGACAGGCATCTCAGTTAAAT 18831 |||| ||| ||||| | | | || |||| ||| | || || || | || ||| | ||| Sbjct 16193 ATGTTTTATAACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAAT 16252 Query 18832 GCAGTAGTTGACTTGCAAGACAGAAACACAGAGTTGTCTTATCAGCTTATGCTGGATGCA 18891 || || | ||| | ||||||||||| ||||| ||||| |||||||||||| | ||| Sbjct 16253 GCTGTCATCGACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAAT 16312 Query 18892 CTGGGTGACAGAACCAGATACTTTTCCATGTGGAACCAGGCCGTAGATAGCTACGATCCA 18951 | || ||||| |||| | | ||||||| || ||||| ||| || |||||| Sbjct 16313 TTACACGATAGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCA 16372 Query 18952 GATGTAAGAATAATTGAAAACCATGGCGTTGAAGACGAGTTGCCAAACTACTGCTTTCCT 19011 || || |||| || || || ||| || |||||||| | ||||| || |||||||| Sbjct 16373 GAGGTCCGAATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCG 16432 Query 19012 TTA 19014 ||| Sbjct 16433 TTA 16435 Score = 104 bits (114), Expect = 5e-18 Identities = 421/652 (65%), Gaps = 25/652 (4%) Strand=Plus/Plus Query 6042 ATTTGGTCAGAAAACACAATCTGTCGGTTGTCAAGCTTGGTTGCAAAAGACCCGTAGAGG 6101 ||||| || | ||||| || | | || || | | |||| ||||| || ||||| || Sbjct 5574 ATTTGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGT 5633 Query 6102 GCGTTGGAGAGCAACTTGGCGATGGAGCGCTGGGT----TTG-GtttttttCCCGGTCGG 6156 ||||| || | || || |||||| ||||| || ||| | |||||| ||| ||| Sbjct 5634 GCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTCCG--CGG 5691 Query 6157 CTTTTTCCTTGGCTGCGATGTTGAGCTGG--ACGTACTCCCTGGCCACGCACTTCCAGCC 6214 | | || | || || || || || ||| ||||| || || |||||||| ||||| Sbjct 5692 CCTCTT---TTGCCGCTATATT-AG-TGGCTACGTATTCTCTTGCCACGCAATTCCACTG 5746 Query 6215 GGGAAAAACGGCCGTGCGCTCGTCCGGCACCAGCCTTACGCTCCATCCGCGGTTGTGCAG 6274 ||| || | ||||| || || |||| ||| | ||||||| || || |||| Sbjct 5747 CTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAA 5806 Query 6275 GGTGATGACGTCGATGCTGGTGGCCACCTCTCCGCGCAGGGGCTCGTTGGTCCAGCAGAG 6334 || ||| | |||||| ||| || || || | | || || |||||||| || Sbjct 5807 AGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAG 5866 Query 6335 GCGACCGCCCTTGCGAGAGCAGAAGGGTGGCAGGGGGTC-AAGCAGGCGCTCGTCCGGGG 6393 || ||||| || | || || || || || | || ||| | | ||| | |||| Sbjct 5867 ACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCT-TCGGCAGGGG 5925 Query 6394 GGTCGGCGTCGATGGTAAAGATGGCGGGCAGGAGGTGTTTGTCAAAGTAGTCGATCTGAT 6453 ||| || || || || ||||| || | ||| |||||| ||| || | | Sbjct 5926 CGTCAGCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGT 5985 Query 6454 GCCCGGGGCGACGCAGGGCGGTTTCCCAGTCCCGC---ACCGCCAAGGCGCGCTCGTAGG 6510 |||| ||| ||| ||| | | | | | |||||| | || ||| Sbjct 5986 CACCGGTT----GCAAAGCGTTTTG--AATACTGATAGAGAGCCAAGTTTCTGTCAAAGG 6039 Query 6511 GACTGAGGGGGGCGCCCCAGGGCATGGGATGCGTCAGGGCCGAGGCGTACATGCCGCAGA 6570 || | || || | ||| |||||||||||||||| | || ||| ||||| ||| | | Sbjct 6040 GATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAA 6099 Query 6571 TGTCGTAGACGTAAAGGGGCTCCTCCAGGACGCCGAGGTAGGTTGGGTAGCAGCGCCCCC 6630 | || || || |||| || ||||| | || || | ||| || |||||||| || |||| Sbjct 6100 TATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCC 6159 Query 6631 CGCGGATGCTGGCCCGTACGTAGTCGTAGAGCTCGTGCGAGGGGGCCAGAAG 6682 | | |||||| | | ||| | || || | ||||| || ||||||||||| Sbjct 6160 CTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211 Score = 102 bits (112), Expect = 2e-17 Identities = 250/372 (67%), Gaps = 8/372 (2%) Strand=Plus/Plus Query 17809 AAGATGGCCACTCCGTCGATGATGCCGCAGTGGTCGTACATGCACATCGCCGGGCAGGAC 17868 |||||||||||||| |||||| | ||||| ||||| ||| | || ||||| || || || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 17869 GCCTCGGAGTACCTGAGCCCGGGTCTGGTG-CAGTTTGCCCGTGCGACGGAAACCTACTT 17927 || || || || | | | | | | ||| || ||||| | || || ||||| ||||| Sbjct 15371 GCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429 Query 17928 CTCACTGGGCAACAAGTTCAGAAACCCCACCGTGGCGCCCACCCACGACGTCACCACCGA 17987 || || || | || || ||||| || || || ||||| || ||||| || || || || Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Query 17988 TCGGTCCCAGCGACTGACAA-TCCGCTTCGTCCCCGTGGACAAGGAAG--ACACCGCTTA 18044 | || ||| |||| |||| | | || || || | ||| || |||| |||| | || Sbjct 15490 AAGATCGCAGAGACT-ACAATTAAGATTTGTTCCAGCGGAAAAAGAAGATACACAGTATA 15548 Query 18045 CTCCTACAAAACCCGCTTCACGCTGGCCGTGGGCGACAACCGGGTGCTAGACATGGCCAG 18104 || | ||| |||| || || |||| || || ||| | | |||| ||| || Sbjct 15549 CT--TTTAAAGCCCGATTTCAACTCACCGTCGGTGATAACAGAATATTAGATTTGGGTAG 15606 Query 18105 TACCTACTTTGACATCCGCGGCGTGATCGACCGCGGTCCCAGCTTCAAGCCGTACTCGGG 18164 || || ||||| || || ||| ||| | |||||| || || || ||| || Sbjct 15607 TAGTTATTTTGATATAAAGGGAAAGATAGACAGAGGTCCCTCTTTTAAACCTTACAGTGG 15666 Query 18165 GACGGCTTACAA 18176 || || ||||| Sbjct 15667 CACAGCATACAA 15678 Score = 100 bits (110), Expect = 6e-17 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 25237 ATTTTTCCCACCCTCTACGCTATCTTTCAGCAAAGCCGGGGGCAGCAGCAAGAACTGAAA 25296 || ||||| || | || ||||||||||| ||| |||| || | | ||| ||| Sbjct 22161 ATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAATGTCAACCTAAA 22220 Query 25297 ATAAAAAACCGCACGCTGAGGTCGCTTACCCGAAGCTGCCTCTATCACAAGAGCGAAGAG 25356 || ||||| ||||| | || || |||||| ||||| || |||||||| | |||||| Sbjct 22221 ATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCACAAAAACGAAGAA 22280 Query 25357 CAGCTGCAGCGAACCCTGGAGGACGCAGAAGCGCT 25391 ||||||||| | || ||||| |||||||| ||||| Sbjct 22281 CAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCT 22315 Score = 91.5 bits (100), Expect = 3e-14 Identities = 213/319 (67%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 5516 GCCGttttttttGATGCGCTTCCTACCTCGAGTCTCCATGAGGCGGTGCCCGCGTTCGGT 5575 || ||||| ||| | | | | ||||| |||||||| || | ||||| ||| || Sbjct 5036 GCTGTTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCTGT 5095 Query 5576 GACGAAGAGGCTGTCGGTGTCTCCGTAGACGGAGGTCAGGGCGC-GCTCTTCCAGGGGGG 5634 ||||| | ||||| || |||||||| | || | | | || | ||| || | Sbjct 5096 CACGAACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGTCCCAAGGTCG 5155 Query 5635 TCCCGCGGTCCTCGGCGTAGAGAAACTCGCACCACTCTGACATAAACGCCCGGGTCCAGG 5694 |||| | || || | || | ||| || ||| || || | || || |||||||||| Sbjct 5156 TCCC-CAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCAGG 5214 Query 5695 CTAGGACGAATGAGGCGATGTGGGAAGGGTACCGGTCGTTATCGATGAGGGGGTCGGTTT 5754 | || || ||||| ||||| ||||| ||||| |||| ||||| || | ||| || | Sbjct 5215 CGAGAACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAAGTAT 5274 Query 5755 TTTCCAAGGTGTGCAAGCACATGTCCCCCTCGTCCGCTTCCAAAAATGTGATTGGCTTGT 5814 |||| | | || | ||| | || ||||| | || ||| || ||||||||||| Sbjct 5275 TTTCTATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGAAAGTGATTGGCTTAA 5334 Query 5815 AGGTGTAGGTCACGTGATC 5833 | | || ||||||||||| Sbjct 5335 ACTTATATGTCACGTGATC 5353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109380855358528