Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq35 98.7 1e-15 >seq35 Length=13989929 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| ||||||||||||||||||| |||||||| ||||| ||||| | Sbjct 11960696 AGCTCCAAGAGAAAGGCATCTACAAAGCCATGAGTGAGTTTGACATCTTTATCAACTACA 11960637 Query 10419 TAGAAGCATACATGACCATGAA 10440 ||||||| |||||||| ||||| Sbjct 11960636 TAGAAGCCTACATGACAATGAA 11960615 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||||||| || |||||| | Sbjct 11962818 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACTTGCTGGAAGTGA 11962759 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| ||||| || || |||| || || || || || || ||||| ||||| |||| Sbjct 11962758 TGCCCCAGGCAGAGAACCAGGGTCCAGACATCATGGAACATGTAAACTCCCTGGGAGAGA 11962699 Query 10260 ATCTAAAG 10267 | || ||| Sbjct 11962698 AGCTGAAG 11962691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546933133847680