Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq57 159 5e-34 seq127 105 9e-18 >seq57 Length=13896254 Score = 159 bits (176), Expect = 5e-34 Identities = 207/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || |||||||| |||||| || |||||||| | ||| | |||| ||| Sbjct 6724352 AAGGGACAGCCCTTGACGTTATTACAGATGAGGGACTGGATGGAGGCAGTGTTGATGATT 6724293 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| || || ||||| || || ||||| ||||||||||| || |||||||| Sbjct 6724292 TTAAAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTACTGAGGTGAGCAGATAGGA 6724233 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| | || || || Sbjct 6724232 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTTTCCCCAAAT 6724173 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | ||||| |||||||| |||| | | | ||||||||||| ||| || ||| Sbjct 6724172 ATAGCATCTGGACGAGGCTTTTCTACCAGCAGGGCAGGGTACAACTCCATAGCGTCAATG 6724113 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || ||||| | ||||||||| |||||||| ||||||| Sbjct 6724112 TCACCATACAGGGCTTCCAATTCGGCAGCCATTTCCTTCTCTCCTG 6724067 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 9631 GTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCAC 9690 || ||||| |||| | || ||| ||| |||||||| ||| |||| || ||||| ||| Sbjct 6722690 GTAGTCTGGAACAAGCGCTCATCATCCCACTCTGGATGCTCTTGTTTAAGCACATCACAC 6722631 Query 9691 ACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCA 9750 |||| ||||||||| | |||||||| || || |||||||| |||||||| ||||| ||| Sbjct 6722630 ACTCGGTTGTGTTCTCGAAGCCAGATGGTGGCATACATCATCAGACCAGGTACCAGACCA 6722571 Query 9751 AAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATG 9810 || ||| || || ||||| | ||| | || || | || || |||||||| Sbjct 6722570 AAGATCTCCTGCCCCACAGCAAACTGCAGGTGCTCAGGGGTATGAGGTGGGTAGATCATC 6722511 Query 9811 TGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 | |||||| ||||||||| | |||||||||||| || || || || Sbjct 6722510 TCCACCTGAGTATCTTTGACTGTGGGGGGATACATCTCTCCATCTAT 6722464 Score = 113 bits (124), Expect = 6e-20 Identities = 185/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| |||||||| |||| || ||||| ||||| || | ||| |||| ||| || Sbjct 6723291 CTTACCCGGCCAGCATTTTGCTTGGTGAAGGATTCAACAAACTGAGTAAGGCCATGCTCT 6723232 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 || ||||||||||||||||| | || | | | | |||| | |||||| | | Sbjct 6723231 ATTAGTATGGAATTGTTGTAGAGAAACTGTTTAAAATTGTACTCCTGGTCATCAATTTGA 6723172 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || | || |||| |||| ||||||||| || | ||||||| || | | ||||| Sbjct 6723171 AAGGTGTCAGGCAGCAGAGGATGCCAGTGGTAGAGGGTGTTAAATTCAGCAGCGATACGG 6723112 Query 9502 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 |||||||| ||||| | | ||| |||||||| || | |||| ||| | ||||| Sbjct 6723111 TTTTGGTATTGGAATTGTTGGTTGAAA-AGCAGTTCTGGGTCAAACTTCAATTTGAAGTG 6723053 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 ||||| || || ||||| ||||| Sbjct 6723052 ATAGCCACTCAGGTGCTGTACATA 6723029 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| || || || || ||||| ||| ||| | || Sbjct 6721497 TCTTACCCCATGGCCCAGTCCTTTGGTAAAAGCAGGTCCTCGTTTTTGATCTGTCTTGAA 6721438 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| |||||| |||| || || ||||| | ||| ||||| || ||||| Sbjct 6721437 AAACTGATGGGTGAAGTGTTGGGCAAAGAATGCGAACATCATGTTAGTGCCTTGAGGATC 6721378 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || | || | || | |||||| ||| |||| || Sbjct 6721377 AGGGATAAACTTTCTTCTCAGAAGAACTTTCTCCAGAA 6721340 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | |||||||| || || | || || ||||| || || | || Sbjct 6720994 ACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACAGGAGGAAGGGCTCTGGTATA 6720935 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||||| || ||||| |||||||||||| ||| | || ||| | ||||| | || Sbjct 6720934 GTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAATCCACATTGTAAGTTGG 6720875 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 |||||||||||||||| ||||| ||||| Sbjct 6720874 TGGGCTGTCAATCAAATGTGATCTGGCTGAA 6720844 >seq127 Length=8276331 Score = 105 bits (116), Expect = 9e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || || || ||||| || |||||||| | || || |||||| |||| Sbjct 253161 AAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGGTTC 253220 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | || || ||||||||||| ||||| || | ||| | || ||||| || |||||| Sbjct 253221 CCTAAAAGACCCTTGAGGGAAAAAGGAGCTCCGATCTCTATCATACTCTCCCCAAAGATG 253280 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| | |||||| | | | |||| ||| || |||| || || |||||| Sbjct 253281 GAGTTGGGCTGACACTTTTCAAGAAGCAGCCCGGGGTAGAATTCCAAGGCATCAATGTCT 253340 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| | | | || ||||| || |||| ||||||| Sbjct 253341 CCGTATAACTCTTCCAACTCAGCAGCCATCTCCTCCTCTCCTG 253383 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || |||||||| |||| | || |||||| | || || || |||| || || Sbjct 262590 GTGCTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGAT--GTTT 262647 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || ||||| |||||||| ||||| | || ||||||||||| | ||||||||| |||| Sbjct 262648 TGAAGAACTGATGCGTGAAGTGTTGTGCGAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 262707 Query 10144 GATCGGGAGTGAAGGTCCTCCGAAGAAGA 10172 ||||||| |||| | |||| || ||| Sbjct 262708 GATCGGGGATGAACTTTCTCCTGAGCAGA 262736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707947414283920