Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq57 159 5e-34
seq127 105 9e-18
>seq57
Length=13896254
Score = 159 bits (176), Expect = 5e-34
Identities = 207/286 (72%), Gaps = 0/286 (0%)
Strand=Plus/Minus
Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749
|| ||||| || |||||||| |||||| || |||||||| | ||| | |||| |||
Sbjct 6724352 AAGGGACAGCCCTTGACGTTATTACAGATGAGGGACTGGATGGAGGCAGTGTTGATGATT 6724293
Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809
||| || || ||||| || || ||||| ||||||||||| || ||||||||
Sbjct 6724292 TTAAAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTACTGAGGTGAGCAGATAGGA 6724233
Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869
|| |||| || ||||| | ||| || || || || || || | ||| | || || ||
Sbjct 6724232 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTTTCCCCAAAT 6724173
Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929
|| || | ||||| |||||||| |||| | | | ||||||||||| ||| || |||
Sbjct 6724172 ATAGCATCTGGACGAGGCTTTTCTACCAGCAGGGCAGGGTACAACTCCATAGCGTCAATG 6724113
Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| || || ||||| | ||||||||| |||||||| |||||||
Sbjct 6724112 TCACCATACAGGGCTTCCAATTCGGCAGCCATTTCCTTCTCTCCTG 6724067
Score = 143 bits (158), Expect = 4e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 9631 GTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCAC 9690
|| ||||| |||| | || ||| ||| |||||||| ||| |||| || ||||| |||
Sbjct 6722690 GTAGTCTGGAACAAGCGCTCATCATCCCACTCTGGATGCTCTTGTTTAAGCACATCACAC 6722631
Query 9691 ACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCA 9750
|||| ||||||||| | |||||||| || || |||||||| |||||||| ||||| |||
Sbjct 6722630 ACTCGGTTGTGTTCTCGAAGCCAGATGGTGGCATACATCATCAGACCAGGTACCAGACCA 6722571
Query 9751 AAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATG 9810
|| ||| || || ||||| | ||| | || || | || || ||||||||
Sbjct 6722570 AAGATCTCCTGCCCCACAGCAAACTGCAGGTGCTCAGGGGTATGAGGTGGGTAGATCATC 6722511
Query 9811 TGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857
| |||||| ||||||||| | |||||||||||| || || || ||
Sbjct 6722510 TCCACCTGAGTATCTTTGACTGTGGGGGGATACATCTCTCCATCTAT 6722464
Score = 113 bits (124), Expect = 6e-20
Identities = 185/264 (70%), Gaps = 2/264 (1%)
Strand=Plus/Minus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| |||||||| |||| || ||||| ||||| || | ||| |||| ||| ||
Sbjct 6723291 CTTACCCGGCCAGCATTTTGCTTGGTGAAGGATTCAACAAACTGAGTAAGGCCATGCTCT 6723232
Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441
|| ||||||||||||||||| | || | | | | |||| | |||||| | |
Sbjct 6723231 ATTAGTATGGAATTGTTGTAGAGAAACTGTTTAAAATTGTACTCCTGGTCATCAATTTGA 6723172
Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501
|| | || |||| |||| ||||||||| || | ||||||| || | | |||||
Sbjct 6723171 AAGGTGTCAGGCAGCAGAGGATGCCAGTGGTAGAGGGTGTTAAATTCAGCAGCGATACGG 6723112
Query 9502 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560
|||||||| ||||| | | ||| |||||||| || | |||| ||| | |||||
Sbjct 6723111 TTTTGGTATTGGAATTGTTGGTTGAAA-AGCAGTTCTGGGTCAAACTTCAATTTGAAGTG 6723053
Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584
||||| || || ||||| |||||
Sbjct 6723052 ATAGCCACTCAGGTGCTGTACATA 6723029
Score = 100 bits (110), Expect = 4e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||||||||| || || || || ||||| ||| ||| | ||
Sbjct 6721497 TCTTACCCCATGGCCCAGTCCTTTGGTAAAAGCAGGTCCTCGTTTTTGATCTGTCTTGAA 6721438
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| || ||||| |||||| |||| || || ||||| | ||| ||||| || |||||
Sbjct 6721437 AAACTGATGGGTGAAGTGTTGGGCAAAGAATGCGAACATCATGTTAGTGCCTTGAGGATC 6721378
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185
|| | || | || | |||||| ||| |||| ||
Sbjct 6721377 AGGGATAAACTTTCTTCTCAGAAGAACTTTCTCCAGAA 6721340
Score = 93.3 bits (102), Expect = 6e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| || || | |||||||| || || | || || ||||| || || | ||
Sbjct 6720994 ACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACAGGAGGAAGGGCTCTGGTATA 6720935
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
|||||||| || ||||| |||||||||||| ||| | || ||| | ||||| | ||
Sbjct 6720934 GTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAATCCACATTGTAAGTTGG 6720875
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|||||||||||||||| ||||| |||||
Sbjct 6720874 TGGGCTGTCAATCAAATGTGATCTGGCTGAA 6720844
>seq127
Length=8276331
Score = 105 bits (116), Expect = 9e-18
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| ||||| || || || || ||||| || |||||||| | || || |||||| ||||
Sbjct 253161 AAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAACAGATGGGGTTC 253220
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
| | || || ||||||||||| ||||| || | ||| | || ||||| || ||||||
Sbjct 253221 CCTAAAAGACCCTTGAGGGAAAAAGGAGCTCCGATCTCTATCATACTCTCCCCAAAGATG 253280
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
| |||||| | |||||| | | | |||| ||| || |||| || || ||||||
Sbjct 253281 GAGTTGGGCTGACACTTTTCAAGAAGCAGCCCGGGGTAGAATTCCAAGGCATCAATGTCT 253340
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
||||| | | | || ||||| || |||| |||||||
Sbjct 253341 CCGTATAACTCTTCCAACTCAGCAGCCATCTCCTCCTCTCCTG 253383
Score = 87.8 bits (96), Expect = 3e-12
Identities = 110/149 (74%), Gaps = 4/149 (3%)
Strand=Plus/Plus
Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083
|| || |||||||| |||| | || |||||| | || || || |||| || ||
Sbjct 262590 GTGCTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGAT--GTTT 262647
Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143
| || ||||| |||||||| ||||| | || ||||||||||| | ||||||||| ||||
Sbjct 262648 TGAAGAACTGATGCGTGAAGTGTTGTGCGAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 262707
Query 10144 GATCGGGAGTGAAGGTCCTCCGAAGAAGA 10172
||||||| |||| | |||| || |||
Sbjct 262708 GATCGGGGATGAACTTTCTCCTGAGCAGA 262736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 707947414283920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |