Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq66 125 6e-24
seq148 93.3 4e-14
seq147 91.5 1e-13
seq190 86.0 6e-12
seq91 84.2 2e-11
>seq66
Length=5789316
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| ||||| || | ||||| ||||| ||| || ||||| || | ||| || || |
Sbjct 2649894 CCTCCCCTCAAACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649835
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| || | ||| |||||||| || || ||||||| | || ||||| || || |||
Sbjct 2649834 AGGGTACGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2649775
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | || || |||||||| ||| |||||| | | || ||
Sbjct 2649774 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 2649715
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | |||||||| || ||||| || || ||||| |||||||||||||
Sbjct 2649714 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGC 2649666
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| ||||| ||| || ||||| || | ||| || || || || | ||| ||
Sbjct 2649649 CACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTC 2649590
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || || ||||||| || || |||||||| || || || || || ||||| |
Sbjct 2649589 CAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCCTG 2649530
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || |||||||| ||| |||||| | | || || || | |||||||| ||
Sbjct 2649529 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCTT 2649470
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || |||||||||||||||||
Sbjct 2649469 GCCAGTCAGGGTCTTCACAAAGATCTGCAT 2649440
>seq148
Length=5416653
Score = 93.3 bits (102), Expect = 4e-14
Identities = 115/156 (74%), Gaps = 1/156 (1%)
Strand=Plus/Plus
Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915
|||||||| || || ||||||| | |||||||||||| || ||||| ||||| || ||
Sbjct 991112 TCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTGGAATTCCTTCCTTATCC 991171
Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTC-AATCGTGATGGT 94974
| || || ||||| || | | ||| || | | | || || || | | |||||||
Sbjct 991172 TGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCAACTTCGAGTTATGATGGT 991231
Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010
||| || ||||| ||||| ||||| |||||||| ||
Sbjct 991232 TTTCCCCGTAAGGGTTTTGACAAAAATCTGCATCCT 991267
>seq147
Length=2532799
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||||| |||| |||| ||||| || || ||||| || | ||| || ||
Sbjct 2383947 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 2383888
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | ||| |||||||| || || | ||||| | || ||||| || |||||
Sbjct 2383887 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 2383828
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || ||||| || | || || ||||| || | | || ||| | | || ||
Sbjct 2383827 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACC 2383768
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013
|| | |||||||| || ||||| | || ||||| ||||||||||| || ||
Sbjct 2383767 TCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTCTGAC 2383715
>seq190
Length=3085523
Score = 86.0 bits (94), Expect = 6e-12
Identities = 206/309 (67%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668
|| ||||||| | ||| || ||| | | || ||||||||||||||| || |||| || |
Sbjct 695277 GAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATCAC 695336
Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728
||| ||| | ||| | | || || ||||| | | || || || |||||||
Sbjct 695337 CCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCCCC 695396
Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTG 43788
|||| ||||| ||||| || || || ||||| || || ||| | | |||||||| |
Sbjct 695397 TATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCCAG 695456
Query 43789 ATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTA 43848
| | | || || || ||||| || || | |||| | | |||||||| || |
Sbjct 695457 AACGTGGAGCTACTCTTCCATAGCACCCAGAAGAAAGAGCTATCTGAATGTCCGTCTTCA 695516
Query 43849 CGA-GGCTGTAGCCTTTGGGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACCCG 43907
| | |||| | || | ||| ||| | |||| | ||| |||| ||| || || ||
Sbjct 695517 CAAGGGCTTTCTCC-ATAGGTGGTATTGTATAATCATAGGCACTGTCCAGGTCATAGCCT 695575
Query 43908 GCGGAGAGC 43916
|| ||| ||
Sbjct 695576 GCCGAGCGC 695584
>seq91
Length=4965619
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|| ||| || | || | ||| || |||||||| | ||| || || | ||| |
Sbjct 1585560 TCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGTCC 1585619
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || ||||||| | |||||||||||| || | || ||||| ||
Sbjct 1585620 ATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCCTT 1585679
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || | | ||| || | | | || || | | |||||
Sbjct 1585680 ATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTGAT 1585739
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010
|||||| || ||||| ||||| | || |||||||| ||
Sbjct 1585740 GGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCATCCT 1585778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447925881897480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |