Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq206 179 6e-41 seq138 163 4e-36 seq81 132 8e-27 seq26 131 3e-26 >seq206 Length=3546904 Score = 179 bits (198), Expect = 6e-41 Identities = 202/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| ||||||| | || || || || || || || |||||||||||||| || || Sbjct 211036 GCTAAGCGCCATCGCAAGGTC-CTCCGTGACAATATTCAGGGAATCACCAAGCCCGCCAT 210978 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||| || |||||||||||||||||| |||| || || ||||||| |||| Sbjct 210977 CCGTCGCCTGGCACGCCGTGGTGGAGTCAAGCGTATCTCCGGCCTGATCTATGAGGAGAC 210918 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| || |||| || ||| || ||| || || Sbjct 210917 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAATGTGATCCGGGACGCTGTCACCTACACGGA 210858 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || || ||||| || |||||||| | ||||| || | || |||||||| Sbjct 210857 GCACGCCAAGCGCAAAACTGTTACAGCCATGGATGTGGTCTACGCGCTTAAGCGTCAAGG 210798 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || |||||| ||||| Sbjct 210797 ACGCACCCTCTACGGCTTTGGAGGTTAA 210770 Score = 159 bits (176), Expect = 5e-35 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| | ||||| ||||||||||| || || || ||||| || || Sbjct 177340 CGCTAAGCGTCATCGCAAAGTCCTTCGCGATAACATCCAGGGTATTACAAAGCCCGCAAT 177399 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | || ||||| |||||||| || ||||||||| |||| || || |||| || |||| Sbjct 177400 TAGGCGGCTGGCCCGTCGTGGCGGCGTCAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 177459 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | || || ||| ||| |||| || || || ||| || || Sbjct 177460 TCGCGGGGTGCTGAAGGTGTTTCTTGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 177519 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 177520 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 177579 Query 16672 CCG 16674 ||| Sbjct 177580 CCG 177582 Score = 156 bits (172), Expect = 7e-34 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| || || ||||||||||| || ||||| || || ||||| || || Sbjct 323972 CTGCGCGATAACATTCAGGGCATCACCAAGCCTGCCATCCGGCGCCTAGCTCGCCGCGGC 323913 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||||||| || ||||||| |||| || | ||| ||||| | || Sbjct 323912 GGCGTCAAGCGCATCTCTGGACTGATCTATGAGGAGACCCGCGGGGTTCTGAAGGTGTTT 323853 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||| ||| || ||| || |||||||| || || ||||| ||| Sbjct 323852 CTGGAGAACGTGATCCGTGACGCTGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 323793 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || || ||||| Sbjct 323792 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 323752 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | ||||||||| |||||||| || || || ||||| || || Sbjct 220179 GCTAAGCGGCACCGGAAGGTTCTTCGAGACAACATCCAGGGCATTACTAAGCCTGCCATT 220238 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| ||||| |||||||||||| | ||||| | | |||||||||| Sbjct 220239 CGCCGCCTTGCTCGCCGTGGCGGAGTCAAGCGTATTTCTGGTCTCATATATGAAGAGACC 220298 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | |||| | ||| | || || ||| ||| |||| ||||| | ||| || ||| Sbjct 220299 CGAGGTGTTCTCAAGGTGTTTCTAGAGAACGTCATCCGCGATGCCGTTACCTACACGGAG 220358 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| ||||||| | || ||||| | || || || ||| Sbjct 220359 CACGCCAAGCGCAAGACCGTCACAGCCATGGACGTGGTTTATGCCCTCAAGCGGCAGGGC 220418 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 220419 CGCACTCTTTATGGCTTTGG 220438 Score = 150 bits (166), Expect = 3e-32 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||||||||| ||||||||||| |||||||| || ||||||| || || Sbjct 322706 CTGCGGGACAACATCCAAGGCATCACCAAGCCCGCTATCCGACGCTTGGCTCGCCGCGGC 322765 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||||||||| |||| || || |||| || |||| || | || | ||| | || Sbjct 322766 GGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGACCCGCGGGGTGCTCAAGGTGTTT 322825 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| ||||||| || ||| || |||||||| || || ||||| ||| Sbjct 322826 CTGGAGAACGTGATCCGTGATGCTGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 322885 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || || ||||| Sbjct 322886 ACCGCCATGGACGTGGTCTACGCGCTTAAGCGCCAGGGCCG 322926 Score = 122 bits (134), Expect = 1e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| | ||||| || || ||||| || || || || || || || Sbjct 198607 GCTAAGCGCCACCGCAAAGTCCTTCGCGACAATATCCAGGGTATTACAAAACCCGCAATT 198548 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | || ||||| || ||||| || |||||||| |||| || || |||| || |||| | Sbjct 198547 AGGCGCCTGGCCCGCCGTGGCGGGGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGACT 198488 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||| | || || ||| || || | || || || ||| |||||| Sbjct 198487 CGCGGGGTACTGAAAGTGTTTCTGGAGAATGTGATTCGCGACGCCGTCACCTACACCGAG 198428 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || |||||||||||| ||||||| | ||||| || | || || || ||| Sbjct 198427 CACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 198368 Query 16673 CG 16674 || Sbjct 198367 CG 198366 >seq138 Length=3020394 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || ||||||||||| || ||||||||||| || || Sbjct 2641237 CGCCAAGCGTCACCGCAAGGTGCTGCGCGATAACATCCAGGGTATCACCAAGCCCGCCAT 2641296 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||| ||||| ||||||||||| |||| || || |||| || |||| Sbjct 2641297 TCGGCGCCTGGCTCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 2641356 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| | || || ||| ||| |||| || ||| || ||| || || Sbjct 2641357 TCGCGGGGTTCTGAAGGTGTTTCTGGAGAACGTGATCCGCGACGCTGTCACCTACACGGA 2641416 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 2641417 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2641476 Query 16672 CCG 16674 ||| Sbjct 2641477 CCG 2641479 Score = 161 bits (178), Expect = 2e-35 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| || || ||||||||||| || ||||||||||| || || Sbjct 2645367 GCCAAGCGTCACCGCAAGGTGCTGCGCGATAACATCCAGGGTATCACCAAGCCCGCCATT 2645308 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| ||||| ||||||||||| |||| || || |||| || |||| | Sbjct 2645307 CGGCGCCTGGCTCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGACT 2645248 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | || || ||| ||| |||| || ||| || ||| || ||| Sbjct 2645247 CGCGGGGTTCTGAAGGTGTTTCTGGAGAACGTGATCCGCGACGCTGTCACCTACACGGAG 2645188 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | ||||| || | || || || ||| Sbjct 2645187 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 2645128 Query 16673 CG 16674 || Sbjct 2645127 CG 2645126 Score = 138 bits (152), Expect = 2e-28 Identities = 177/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| | | || || ||||| ||||| || || |||||||| || Sbjct 2813722 GCTAAGCGCCACCGCAAGGTTTTGCGCGACAACATTCAAGGCATTACTAAGCCAGCCATT 2813663 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | || |||| || ||||| ||||||||||| |||| || || |||| || |||| Sbjct 2813662 AGGCGCTTGGCCCGACGTGGAGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGACC 2813603 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||| | ||||| | | || |||| ||| ||| || ||| |||||| Sbjct 2813602 CGTGGGGTGCTGAAAGTGTTCCTGGAAAATGTGATCCGTGACGCTGTCACCTACACCGAG 2813543 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || |||||||||||| | ||||| | ||||| || | || || ||||| Sbjct 2813542 CACGCCAAGCGCAAGACTGTCACCGCTATGGACGTGGTCTACGCGCTCAAGCGGCAAGGG 2813483 Query 16673 CGTA 16676 |||| Sbjct 2813482 CGTA 2813479 >seq81 Length=5456323 Score = 132 bits (146), Expect = 8e-27 Identities = 188/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||| ||||| || | Sbjct 1578549 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACGAAGCCCGCCA 1578491 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 1578490 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGA 1578431 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| |||| || || || ||| |||| Sbjct 1578430 CCCGGGGCGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCG 1578371 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 1578370 AGCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 1578311 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || ||||| Sbjct 1578310 GCCGCACGCTCTACGGCTTTGG 1578289 >seq26 Length=16019130 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || || | | || | |||||||| || || ||||||||||| || ||| Sbjct 10640820 GCTAAGCGCCACCGTAAAGTCCTGAGGGATAACATTCAGGGCATCACCAAGCCTGCCATC 10640879 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| || || || |||||||| |||| || | | || || || | | Sbjct 10640880 CGACGTCTTGCTCGGCGCGGGGGTGTCAAGCGGATCTCGGGCCTCATTTACGAGGAAACT 10640939 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 10640940 CGAGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGAGACGCGGTCACCTACACCGAG 10640999 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | || || || | || || || ||| Sbjct 10641000 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGGC 10641059 Query 16673 CG 16674 || Sbjct 10641060 CG 10641061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79015593583749