Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq206 179 6e-41
seq138 163 4e-36
seq81 132 8e-27
seq26 131 3e-26
>seq206
Length=3546904
Score = 179 bits (198), Expect = 6e-41
Identities = 202/268 (75%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||| ||||||| | || || || || || || || |||||||||||||| || ||
Sbjct 211036 GCTAAGCGCCATCGCAAGGTC-CTCCGTGACAATATTCAGGGAATCACCAAGCCCGCCAT 210978
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| ||||| || |||||||||||||||||| |||| || || ||||||| ||||
Sbjct 210977 CCGTCGCCTGGCACGCCGTGGTGGAGTCAAGCGTATCTCCGGCCTGATCTATGAGGAGAC 210918
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | ||||| ||| || |||| || ||| || ||| || ||
Sbjct 210917 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAATGTGATCCGGGACGCTGTCACCTACACGGA 210858
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || || ||||| || |||||||| | ||||| || | || ||||||||
Sbjct 210857 GCACGCCAAGCGCAAAACTGTTACAGCCATGGATGTGGTCTACGCGCTTAAGCGTCAAGG 210798
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | || || |||||| |||||
Sbjct 210797 ACGCACCCTCTACGGCTTTGGAGGTTAA 210770
Score = 159 bits (176), Expect = 5e-35
Identities = 181/243 (74%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||||| | ||||| ||||||||||| || || || ||||| || ||
Sbjct 177340 CGCTAAGCGTCATCGCAAAGTCCTTCGCGATAACATCCAGGGTATTACAAAGCCCGCAAT 177399
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| || ||||| |||||||| || ||||||||| |||| || || |||| || ||||
Sbjct 177400 TAGGCGGCTGGCCCGTCGTGGCGGCGTCAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 177459
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | || || ||| ||| |||| || || || ||| || ||
Sbjct 177460 TCGCGGGGTGCTGAAGGTGTTTCTTGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 177519
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| | ||||| || | || || || ||
Sbjct 177520 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 177579
Query 16672 CCG 16674
|||
Sbjct 177580 CCG 177582
Score = 156 bits (172), Expect = 7e-34
Identities = 167/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || |||||||| || || ||||||||||| || ||||| || || ||||| || ||
Sbjct 323972 CTGCGCGATAACATTCAGGGCATCACCAAGCCTGCCATCCGGCGCCTAGCTCGCCGCGGC 323913
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||||||| || ||||||| |||| || | ||| ||||| | ||
Sbjct 323912 GGCGTCAAGCGCATCTCTGGACTGATCTATGAGGAGACCCGCGGGGTTCTGAAGGTGTTT 323853
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| ||| ||| || ||| || |||||||| || || ||||| |||
Sbjct 323852 CTGGAGAACGTGATCCGTGACGCTGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 323793
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| ||||||| | ||||| || | || || || |||||
Sbjct 323792 ACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 323752
Score = 154 bits (170), Expect = 2e-33
Identities = 190/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || || | ||||||||| |||||||| || || || ||||| || ||
Sbjct 220179 GCTAAGCGGCACCGGAAGGTTCTTCGAGACAACATCCAGGGCATTACTAAGCCTGCCATT 220238
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || || ||||| ||||| |||||||||||| | ||||| | | ||||||||||
Sbjct 220239 CGCCGCCTTGCTCGCCGTGGCGGAGTCAAGCGTATTTCTGGTCTCATATATGAAGAGACC 220298
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | |||| | ||| | || || ||| ||| |||| ||||| | ||| || |||
Sbjct 220299 CGAGGTGTTCTCAAGGTGTTTCTAGAGAACGTCATCCGCGATGCCGTTACCTACACGGAG 220358
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||| ||||| ||||||| | || ||||| | || || || |||
Sbjct 220359 CACGCCAAGCGCAAGACCGTCACAGCCATGGACGTGGTTTATGCCCTCAAGCGGCAGGGC 220418
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | ||||||| |||||
Sbjct 220419 CGCACTCTTTATGGCTTTGG 220438
Score = 150 bits (166), Expect = 3e-32
Identities = 166/221 (75%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || ||||||||||| ||||||||||| |||||||| || ||||||| || ||
Sbjct 322706 CTGCGGGACAACATCCAAGGCATCACCAAGCCCGCTATCCGACGCTTGGCTCGCCGCGGC 322765
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
||||||||||| |||| || || |||| || |||| || | || | ||| | ||
Sbjct 322766 GGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGACCCGCGGGGTGCTCAAGGTGTTT 322825
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| ||||||| || ||| || |||||||| || || ||||| |||
Sbjct 322826 CTGGAGAACGTGATCCGTGATGCTGTCACCTACACGGAGCACGCCAAGCGCAAGACCGTC 322885
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| ||||||| | ||||| || | || || || |||||
Sbjct 322886 ACCGCCATGGACGTGGTCTACGCGCTTAAGCGCCAGGGCCG 322926
Score = 122 bits (134), Expect = 1e-23
Identities = 172/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || |||| | ||||| || || ||||| || || || || || || ||
Sbjct 198607 GCTAAGCGCCACCGCAAAGTCCTTCGCGACAATATCCAGGGTATTACAAAACCCGCAATT 198548
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| || ||||| || ||||| || |||||||| |||| || || |||| || |||| |
Sbjct 198547 AGGCGCCTGGCCCGCCGTGGCGGGGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGACT 198488
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || |||| | || || ||| || || | || || || ||| ||||||
Sbjct 198487 CGCGGGGTACTGAAAGTGTTTCTGGAGAATGTGATTCGCGACGCCGTCACCTACACCGAG 198428
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || |||||||||||| ||||||| | ||||| || | || || || |||
Sbjct 198427 CACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 198368
Query 16673 CG 16674
||
Sbjct 198367 CG 198366
>seq138
Length=3020394
Score = 163 bits (180), Expect = 4e-36
Identities = 182/243 (75%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| |||| || || ||||||||||| || ||||||||||| || ||
Sbjct 2641237 CGCCAAGCGTCACCGCAAGGTGCTGCGCGATAACATCCAGGGTATCACCAAGCCCGCCAT 2641296
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||||||| ||||| ||||||||||| |||| || || |||| || ||||
Sbjct 2641297 TCGGCGCCTGGCTCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGAC 2641356
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | ||| ||||| | || || ||| ||| |||| || ||| || ||| || ||
Sbjct 2641357 TCGCGGGGTTCTGAAGGTGTTTCTGGAGAACGTGATCCGCGACGCTGTCACCTACACGGA 2641416
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| | ||||| || | || || || ||
Sbjct 2641417 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2641476
Query 16672 CCG 16674
|||
Sbjct 2641477 CCG 2641479
Score = 161 bits (178), Expect = 2e-35
Identities = 181/242 (75%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| |||| || || ||||||||||| || ||||||||||| || ||
Sbjct 2645367 GCCAAGCGTCACCGCAAGGTGCTGCGCGATAACATCCAGGGTATCACCAAGCCCGCCATT 2645308
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || |||||||| ||||| ||||||||||| |||| || || |||| || |||| |
Sbjct 2645307 CGGCGCCTGGCTCGCCGTGGCGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGACT 2645248
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| ||||| | || || ||| ||| |||| || ||| || ||| || |||
Sbjct 2645247 CGCGGGGTTCTGAAGGTGTTTCTGGAGAACGTGATCCGCGACGCTGTCACCTACACGGAG 2645188
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||| |||||| ||||||| | ||||| || | || || || |||
Sbjct 2645187 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGC 2645128
Query 16673 CG 16674
||
Sbjct 2645127 CG 2645126
Score = 138 bits (152), Expect = 2e-28
Identities = 177/244 (73%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || |||| | | || || ||||| ||||| || || |||||||| ||
Sbjct 2813722 GCTAAGCGCCACCGCAAGGTTTTGCGCGACAACATTCAAGGCATTACTAAGCCAGCCATT 2813663
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| || |||| || ||||| ||||||||||| |||| || || |||| || ||||
Sbjct 2813662 AGGCGCTTGGCCCGACGTGGAGGAGTCAAGCGCATCTCCGGCCTGATCTACGAGGAGACC 2813603
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || |||| | ||||| | | || |||| ||| ||| || ||| ||||||
Sbjct 2813602 CGTGGGGTGCTGAAAGTGTTCCTGGAAAATGTGATCCGTGACGCTGTCACCTACACCGAG 2813543
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || |||||||||||| | ||||| | ||||| || | || || |||||
Sbjct 2813542 CACGCCAAGCGCAAGACTGTCACCGCTATGGACGTGGTCTACGCGCTCAAGCGGCAAGGG 2813483
Query 16673 CGTA 16676
||||
Sbjct 2813482 CGTA 2813479
>seq81
Length=5456323
Score = 132 bits (146), Expect = 8e-27
Identities = 188/262 (72%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||| ||||| || |
Sbjct 1578549 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACGAAGCCCGCCA 1578491
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 1578490 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGA 1578431
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || | ||| | ||||| ||| ||| |||| || || || ||| ||||
Sbjct 1578430 CCCGGGGCGTCCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCG 1578371
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | ||||| || | || || || |
Sbjct 1578370 AGCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 1578311
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | | || || |||||
Sbjct 1578310 GCCGCACGCTCTACGGCTTTGG 1578289
>seq26
Length=16019130
Score = 131 bits (144), Expect = 3e-26
Identities = 174/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || || | | || | |||||||| || || ||||||||||| || |||
Sbjct 10640820 GCTAAGCGCCACCGTAAAGTCCTGAGGGATAACATTCAGGGCATCACCAAGCCTGCCATC 10640879
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| ||||| || || || |||||||| |||| || | | || || || | |
Sbjct 10640880 CGACGTCTTGCTCGGCGCGGGGGTGTCAAGCGGATCTCGGGCCTCATTTACGAGGAAACT 10640939
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | ||||| ||| ||| |||| || || || ||| ||||||
Sbjct 10640940 CGAGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGAGACGCGGTCACCTACACCGAG 10640999
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||| |||||| ||||||| | || || || | || || || |||
Sbjct 10641000 CACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGGC 10641059
Query 16673 CG 16674
||
Sbjct 10641060 CG 10641061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79015593583749
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