Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_006879.1 Length=34450 Score E Sequences producing significant alignments: (Bits) Value seq4931 365 1e-96 >seq4931 Length=27746 Score = 365 bits (404), Expect = 1e-96 Identities = 1321/2038 (65%), Gaps = 79/2038 (4%) Strand=Plus/Plus Query 18298 TCTATATGCGGAGGACGTGTCAATTGAAGCGCCAGACACTCACTTGGTGTTCAAACCAAC 18357 ||| ||||| || || || || |||| ||||| |||||||| |||| |||| || | Sbjct 16039 TCTTTATGCAGAAGATTTGGATATACAAGCTCCAGATACTCACTTAGTGTACAAAGCATC 16098 Query 18358 AGTCACTGAAGGCATTACAAGTTCAGAGGCTCTA---CTGACCCAACAAGCTGCTCCCAA 18414 || | | |||| | || ||| |||| || | || ||| || || || Sbjct 16099 --TCCCGG---GCATGAAAA----AGACTCTCTTGCCCTCGCTCAGCAAAGCGCGCCAAA 16149 Query 18415 CCGTCCAAACTACATAGCCTTTAGAGATAATTTTATTGGTCTCATGTACTACAATAGCAC 18474 | | ||||| || |||| ||||| ||||| ||||| || | |||| || || || | Sbjct 16150 CAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAACAGTAA 16209 Query 18475 AGGTAACATGGGAGTACTGGCAGGCCAGGCTTCTCAGCTAAATGCAGTTGTTGACCTGCA 18534 | || |||| ||| | || || || | || ||||| ||||| || | ||||| || Sbjct 16210 TAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGACCTTCA 16269 Query 18535 AGACAGAAATACTGAGCTGTCCTACCAACTCATGTTGGACGCCCTCGGAGACCGCAGTCG 18594 |||||||||||| || |||| || || || ||||| || | || | | ||| Sbjct 16270 AGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGAACTCG 16329 Query 18595 GTACTTTTCTATGTGGAACCAAGCTGTGGATAGTTACGATCCTGATGTAAGAATCATAGA 18654 || | ||||||| ||||| |||||| || ||||| || || |||||||||| Sbjct 16330 ATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATCATAGA 16389 Query 18655 AAACCATGGCGTAGAAGATGAATTGCCTAATTATTGCTTTCCTTTGGGAGGCATGGCAGT 18714 || ||| |||||||| ||| | || |||||||||||||| || || ||| Sbjct 16390 CAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGG-ATG----- 16443 Query 18715 AACCGACACCTACTCGCCTATAAAG--GTTAATGGAGGAGGCAATGGATGGGAAGCCAAT 18772 | |||| | | |||| | |||||| | |||||| | | |||| Sbjct 16444 ----TTCTCCTA-TTGATTATACTGCTGTTAATCAA------AATGGACAAGCAATCAAT 16492 Query 18773 AACGGCGTTTTCACCGAAAGAGGAGTGGAAATAGGTTCAGGGAACATGTT---TGCCATG 18829 ||| | ||| | | || ||||| || | | ||||| || |||| Sbjct 16493 AAC-----AATAACCCTGCGCAG-GTTCTTATAGG--CAAAGGAAATGTTGAATG-CATG 16543 Query 18830 GAGATTAACCTGCAAGCCAACCTATGGCGTAGCTTTCTGTACTCCAATATTGGGCTGTAC 18889 || || ||| | |||||||| ||| | |||||||| || ||||| | |||||| Sbjct 16544 GAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTAT 16603 Query 18890 CTGCCAGACTCTCTCAAAATCACTCCTGACAACATCACACTCCCAGAGAACAAAAACACC 18949 ||||| || | |||| |||||| | || | | | || || | | | | Sbjct 16604 CTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAG--GATCAGCGGC 16661 Query 18950 TATCAG--TATATGAACGGTCGCGTGACGCCACCCGGG---CTGGTTGACACCTACGTTA 19004 ||| | || ||||| |||| | ||| ||||| ||||| || || | | Sbjct 16662 TATATGCTTACATGAATTCTCGC---ATTCCAGCCGGGGGTCTGGTAGAGGATTATATCA 16718 Query 19005 ACGTGGGCGCGCGCTGGTCCCCCGATGTCATGGACAGTATTAACCCTTTTAATCACCACC 19064 || | || | | ||||| ||||| ||||||| |||| || |||||||| ||| Sbjct 16719 ACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACA 16778 Query 19065 GCAACGCCGGACTCCGCTACCGTTCCATGCTCCTGGGAAACGGACGCTACGTGCCCTTCC 19124 | || | || | | ||| | || ||| | ||||| || ||||| | |||| | Sbjct 16779 GAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTC 16838 Query 19125 ACATCCAGGTGCCCCAGAAATTCTTTGCAATTAAAAACCTGCTGCTGCTCCCCGGTTCCT 19184 | || ||||| || || || || |||||| |||||| |||| ||||| || || || | Sbjct 16839 ATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGT 16898 Query 19185 ACACCTACGAGTGGAACTTCCGCAAGGACGTGAACATGATCTTGCAGAGCTCGCTGGGCA 19244 ||| ||||| ||| || | || || || |||||||| |||||||| | || |||| Sbjct 16899 ACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCA 16958 Query 19245 ATGACCTGCGAGTGGACGGGGC--CAGCATCCGCTTCGACAGCATCAACCTGTACGCCAA 19302 |||| ||| | | |||||| || ||| | | || |||||||| | ||| | || | Sbjct 16959 ATGATCTGAGGGAGGACGGAGCGTCAGTAAC--ATTTGACAGCATTAGCCTATTTGCTAC 17016 Query 19303 CTTTTTCCCCATGGCCCACAACACGGCCTCCACCCTGGAAGCCATGCTGCGCAACGACAC 19362 || || || ||| | || ||||| || || || |||||| | ||||| ||||| || Sbjct 17017 TTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGT 17076 Query 19363 CAACGACCAATCTTTCAACGACTACCTGTGCGCGGCCAACATGCTGTACCCCAT--CCCC 19420 ||||| || || ||| |||||| || | | | |||||||| || | || | || Sbjct 17077 TAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTCCTCC 17136 Query 19421 GC--CAACGCCACCAGCGTGCCCATCTCCATTCCCTCTCGCAACTGGGCAGCCTTCAGGG 19478 || ||| || | ||||| ||||| ||||| | | || ||||| ||||| || | Sbjct 17137 GCATCAA----ACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAG 17192 Query 19479 GCTGGAGTTTCACCCGCCTCAAAACCA-AGGAGACCCCCTCGCTGGGCTCCGGGTTCGAC 19537 | ||| || || | || ||||| | |||| || || | | ||||| | || ||| Sbjct 17193 GTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGAC 17251 Query 19538 CCCTACTTCGTCTACTCCGGCTCCATCCCCTACCTGGACGGCACCTTCTACCTCAACCAT 19597 || ||||| ||||| ||||| ||||| || ||| | ||||| || | || Sbjct 17252 CCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCAC 17311 Query 19598 ACTTTCAAAAAGGTGTCAATCATGTTCGACTCCTCCGTCAGCTGGCCCGGCAACGACCGT 19657 ||| ||| ||||||| | || ||| || || || || || ||||| || || ||| | Sbjct 17312 ACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGA 17371 Query 19658 CTGCTGACGCCCAACGAGTTCGAAATCAAGCGTTCGGTGGACGGTGAAGGGTACAACGTG 19717 || | | || || || || | || || | |||||||| ||||| || ||| Sbjct 17372 CTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACC 17431 Query 19718 GCTCAGAGCAACATGACCAAGGACTGGTTCCTGATTCAGATGCTCAGCCACTACAACATC 19777 ||||||||| || || ||||| |||| ||||||| |||||| |||||||| ||| Sbjct 17432 TCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATC 17491 Query 19778 GGCTACCAGGGCTTCTACGTGCCCGAAAATTACAAGGACCGCATGTACTCTTTCTTCAGA 19837 || ||||| || || || | ||| | |||| || || | |||| || || || ||| Sbjct 17492 GGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGA 17551 Query 19838 AACTTCCAACCCATGAGCCGCCAAATTGTAGATTCAACGGCTTACAC---TAATTATCAG 19894 || || |||||||| | | ||| |||| ||| | | | | || || ||||| Sbjct 17552 AATTTTGAACCCATGTGTAGACAAGTTGTGGAT---CCTGGTAAGACGGAAAAATATCAA 17608 Query 19895 GATGTGAAACTGCCATACCAGCATAACAACTCAGGGTTCGTGGGCTACATGGGACCCACC 19954 || || ||| |||||||| || ||||| || | | |||||| Sbjct 17609 CCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTTT 17668 Query 19955 ATGCGAGAGGGGCAGGCCTACCCGGCCAACTATCCCTATCCCCTGATTGGGGCCACCGCC 20014 |||| | || || | || || |||| || | || || || || | || | | Sbjct 17669 GGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAG-AACAGGC 17727 Query 20015 GTGCCCAGCC-TCACGCAGAAAAAGTTCCTCTGCGACCGGGTGATGTGGAGGATCCCCTT 20073 | | || | || |||| ||| || | || ||| | |||||||||| || || Sbjct 17728 AGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTT 17787 Query 20074 CTCTAGCAACTTCATGTCTATGGGCTCCCTCACCGACCTGGGGCAGAACATGCTGTACGC 20133 ||| |||||| ||||| ||||| | || || || ||||| || || |||| || || Sbjct 17788 CTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGC 17847 Query 20134 CAACTCCGCTCACGCCTTGGATATGACCTTTGAGGTGGATCCCATGGATGAGCCCACGCT 20193 || || ||||| || || || ||||| | || || ||| | ||||| || || || Sbjct 17848 AAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTA 17907 Query 20194 TCTCTATG-TTCTGTTTGAAGTCTTCGACGTGGTGC-GCATCCACCAGCCGCACCGCGGC 20251 |||| ||| | || |||||||| || ||| | |||| | | || ||||| || || || Sbjct 17908 TCTC-ATGATGCTATTTGAAGTATTTGACAT-GTGCAGAGTGCATCAGCCTCAACGAGGT 17965 Query 20252 GTCATCGAGGCCGTCTACCTGCGCACACCTTTCTCTGCCGGTAACGCCACCACCTAAA 20309 ||||| || | | || || | || || || || || ||||||||| | || |||| Sbjct 17966 GTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAAA 18023 Score = 96.9 bits (106), Expect = 8e-16 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 17510 AAGATGGCCACCCCATCGATGATGCCGCAGTGGTCTTACATGCACATCGCCGGGCAGGAC 17569 ||||||||||| || |||||| | ||||| ||||||||| | || ||||| || || || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 17570 GCCTCGGAGTACCTGAGCCCCGGTCTCGTG-CAGTTCGCCCGCGCCACCGACACCTACTT 17628 || || || || | | | || | | ||| || || || |||| ||||| || ||||| Sbjct 15371 GCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429 Query 17629 CAGCTTGGGAAACAAGTTTAGAAACCCCACCGTGGCCCCCACCCACGATGTAACCACGGA 17688 | | | | || |||||||| || || || || || || ||||||||||| ||||| Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Query 17689 CCGCTCGCAAAGGCT 17703 | ||||| || || Sbjct 15490 AAGATCGCAGAGACT 15504 Score = 89.7 bits (98), Expect = 1e-13 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 25014 ATCTTTCCCACTCTGTATGCTATCTTTCAGCAAAGCCGCGGGCAGCACCCTCAGCGCGAA 25073 || ||||| ||| |||||||||||||||| ||| ||||||| | | || || Sbjct 22161 ATATTTCCAACTTTGTATGCTATCTTTCAACAATGCCGCGGTAAAAAATGTC------AA 22214 Query 25074 CTGAAAATAAAAAACCGCTCCTTCCGCTCGCTCACCCGCAGCTGTCTGTACCACAAGAGA 25133 | ||||| ||||| ||| | || | || || ||| |||||||| || ||||| | Sbjct 22215 CCTAAAATTAAAAATCGCACTTTAAGATCACTTACCAAGAGCTGTCTTTATCACAAAAAC 22274 Query 25134 GAAGACCAGCTGCAGCGCACCCTGGACGACGCCGAAGCACT 25174 ||||| ||||||||| | || ||||| ||||| || || || Sbjct 22275 GAAGAACAGCTGCAGAGGACTCTGGAAGACGCAGAGGCGCT 22315 Score = 84.2 bits (92), Expect = 5e-12 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 6174 AGGGATTCAGGGGCGGTCCCCAGGGCATGGGGTGGGTCAGGGCCGAGGCGTACATGCCGC 6233 ||||||| || || || || |||||||||| || || | || ||| ||||| ||| Sbjct 6037 AGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGG 6096 Query 6234 AGATGTCGTACACGTACAGGGGCTCCCTCAACACCCCGATGTAAGTGGGGTAACAGCGCC 6293 | || || || || || | || ||| || || || |||||||||||||| || || | Sbjct 6097 AAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTC 6156 Query 6294 CCCCGCGGATGCTGGCTCGCACGTAGTCGTACATCTCGTGAGAGGGAGCCA 6344 |||| | |||||| ||| || | || || || ||||| || || |||| Sbjct 6157 CCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCA 6207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110033149982392