Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq20 93.3 4e-14 seq17 86.0 7e-12 >seq20 Length=25211774 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||| | || |||||||| || | |||| ||| ||| | | ||||| | |||| Sbjct 21306512 TTCATTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGACTGGACATCACTCCC 21306571 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 ||| | ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| Sbjct 21306572 ATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATA 21306631 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 ||||| ||||||||||||||||| Sbjct 21306632 TTCTCCATGAAATCAAATGGATTTTC 21306657 >seq17 Length=26966924 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| || ||||| | | | Sbjct 9459731 TTTAAAAATCTGCATCCAAAGTGAACACATTATCTGTGGTTTCTGCCATAACTGCAAAAC 9459672 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 || || || ||||| ||| || || || ||||| || ||||| || || || || Sbjct 9459671 GCTGGTACTCTGAAACTCGTTTCTCAAAGAAGTTTGTTTTCCCTTCTAAAGAAATGTTTT 9459612 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 9459611 CCATAAAATCAAAGGGATTTTC 9459590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531467347389320