Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq20 132 6e-26 seq17 125 9e-24 seq22 118 1e-21 seq190 93.3 5e-14 seq113 91.5 2e-13 seq83 87.8 2e-12 >seq20 Length=25211774 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| || || |||||||||||||| || ||||| || || ||||| | Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || ||||| || ||||||||||||||||| || || || ||||||| Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600 Query 33446 CAATAAGTCTCTCTCC 33461 | | || || ||||| Sbjct 21308601 CTACAACTCGTTCTCC 21308616 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 32944 GCATTTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GAC 33000 ||||| | ||| || | |||||| |||| || | ||| ||| ||| | || ||| Sbjct 21306504 GCATTCA-GTTCATTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGTTGGACTGGAC 21306562 Query 33001 ATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCC 33060 || ||||||||| | || || || || || | || || || || ||||| || |||||| Sbjct 21306563 ATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCC 21306622 Query 33061 AATGATATATTTTCCATGAAATCAAACGGATT 33092 | ||| ||||| |||||||||||||| ||||| Sbjct 21306623 AGTGAAATATTCTCCATGAAATCAAATGGATT 21306654 >seq17 Length=26966924 Score = 125 bits (138), Expect = 9e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| ||||| | ||| || Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || |||||||| ||||| | ||||||||||||||||||||| Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGC 9450884 >seq22 Length=17426531 Score = 118 bits (130), Expect = 1e-21 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62446 |||||||||||||||| || ||||||||||| ||||| ||||| || || Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 1398154 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || ||||| |||||||| | Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| ||| ||||||||||| ||||| || || || || || ||||| || | | || | Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | ||| ||||||| | | || | ||| || |||| Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| || ||||| |||||||||||||| | || |||||||||| | Sbjct 1409097 CTCCACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 1409156 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 1409157 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 1409216 Query 63332 CGGTTCCAAGTATATGGC 63349 ||||| | ||| || || Sbjct 1409217 AGGTTCTAGGTAAATAGC 1409234 >seq190 Length=3085523 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 31095 TTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31154 ||| |||||||| | |||||||||| | | ||| | | || |||||||| |||| ||| Sbjct 695275 TTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATC 695334 Query 31155 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31214 || | || || | ||| | ||| || ||| | | || || || | ||||| Sbjct 695335 ACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCC 695394 Query 31215 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31271 |||||||||||| ||||| ||||| |||||| ||| || | |||| | || || Sbjct 695395 CCTATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCC 695454 Query 31272 AGACCTAGGAGCTATTCTACCATAGCA 31298 ||| | ||||||| ||| |||||||| Sbjct 695455 AGAACGTGGAGCTACTCTTCCATAGCA 695481 >seq113 Length=6198913 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 31095 TTGTACTTCTTCCAGTTCTGGATAATATATAC-GTTGATAGATTAGCTGAGCTATTCTAT 31153 ||| |||||||| | |||||||||| | | | | | | || |||||||| |||| || Sbjct 4701979 TTGAACTTCTTCAATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGAT 4702038 Query 31154 CTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTC 31213 | || | || || | |||| | ||| ||| ||| | | || || || | |||| Sbjct 4702039 CACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTC 4702098 Query 31214 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 31270 ||||||||||||| ||||| ||||| |||||| |||||| | |||| | || | Sbjct 4702099 CCCTATAATCTTCATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGC 4702158 Query 31271 CAGACCTAGGAGCTATTCTACCATAGCA 31298 || | | ||||||| ||| |||||||| Sbjct 4702159 CAAAACGTGGAGCTACTCTTCCATAGCA 4702186 >seq83 Length=9551901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 31095 TTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31154 ||| |||||||| | |||||||||| | || | | | || |||||||| ||||||| Sbjct 3111970 TTGAACTTCTTCAATTTCTGGATAAAAAATCTGCCCACAAATGAGCTGAGCAATTCTATT 3111911 Query 31155 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31214 || | || || | |||| | ||| ||| ||| | | || || || | || || Sbjct 3111910 ACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAACAATATAACACCAACTTTCCC 3111851 Query 31215 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31271 |||||||||||| | ||| ||||| |||||| ||| || | |||| | || || Sbjct 3111850 CCTATAATCTTCATATATGACACCAGCTCCTACATCGATGAAGTGTTTTGAAGCCAAGCC 3111791 Query 31272 AGACCTAGGAGCTATTCTACCATAGCA 31298 ||| | ||||||| ||| |||||||| Sbjct 3111790 AGAACGTGGAGCTACTCTTCCATAGCA 3111764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622439552539880