Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_007603.1
Length=46219
Score E
Sequences producing significant alignments: (Bits) Value
seq62610 320 5e-83
>seq62610
Length=1102
Score = 320 bits (354), Expect = 5e-83
Identities = 348/455 (76%), Gaps = 5/455 (1%)
Strand=Plus/Minus
Query 5852 AAGGCGCTCTACAACAAGAAGTATGGCGACATTGCTATGGTGGCAATCAACCGCAAGTAC 5911
||||||||||| ||||| | ||||||||||||||||| ||||| |||| ||||||||||
Sbjct 454 AAGGCGCTCTAAAACAATATGTATGGCGACATTGCTAAGGTGGTCATCACCCGCAAGTAC 395
Query 5912 ACGCCTGAGGAGGTTTTCGATTTCGCCGTTCGATACTTCTCCTGGGCAGAGAGTGCAGCA 5971
|| |||||||| ||||| || ||| | | |||||||||||| ||||| ||||||| | |
Sbjct 394 ACCCCTGAGGAAGTTTTTGACTTCTCTGGTCGATACTTCTCTTGGGCGGAGAGTGAGGAA 335
Query 5972 ATCAAGGCAGCCGAGACAGCGTCATTCCAGGGCGTAGTAACTGAACACCTCATACACAAG 6031
|| |||| ||||| || || ||||||| || | ||| |||| |||| ||
Sbjct 334 ATTGAGGCTATTGAGACGGCAGCACTCCAGGGGGTTGATGGAGAAAGCCTCGTACATAAA 275
Query 6032 CCTCGAGTGTTCACCTTA-ACGGGTTTGGCGCTCTTCATGGGTGTTAACATCAATAGATT 6090
|| ||||| ||||||| | |||| | ||||||| ||||| |||||| || | |||
Sbjct 274 CCGCGAGTATTCACCTGAGGCGGGGCTTGCGCTCTACATGGATGTTAATGTCTTCATATT 215
Query 6091 CGCTCGCTGGCGTACTGAGGCTGGATACTCTGATGTGATGGAATTCA-TTGATAACGTAA 6149
| |||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 214 CCCTCGCTGGCGCACTGAGGCTGGATACTCTGATGTTAGGGAATTCATTTGATAACGTAT 155
Query 6150 TCTACGAGCAGAAATATCAGCTTGGTGTTGCAGGCATCATTAACTCCACCATTGTTGGTA 6209
|| || | || ||||| || ||||||| || || | || ||||||| | | ||| |
Sbjct 154 TCAACAATCACAAATACCATCTTGGTGCAGCCGGAAGTATCAACTCCAACTTCTCTGGGA 95
Query 6210 AAGA-GTTGGGAATCGACAAGCCGCAGGAGATCACCATTAGCAATAACTCTACGGCTA-A 6267
|||| |||| || || || || | |||||| | ||| | | ||| ||||| |||| |
Sbjct 94 AAGATCTTGGATATTGATAA-CCACTGGAGATTAACATCATTAGTAAGTCTACAGCTACA 36
Query 6268 CGATGTTGATAGCATGAAGGAAGCGCTTGAATCTG 6302
| || |||||||||||| |||| || |||||||
Sbjct 35 CTCTGCTGATAGCATGAATGAAGTACTGGAATCTG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147664794238546
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |