Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_007603.1 Length=46219 Score E Sequences producing significant alignments: (Bits) Value seq62610 320 5e-83 >seq62610 Length=1102 Score = 320 bits (354), Expect = 5e-83 Identities = 348/455 (76%), Gaps = 5/455 (1%) Strand=Plus/Minus Query 5852 AAGGCGCTCTACAACAAGAAGTATGGCGACATTGCTATGGTGGCAATCAACCGCAAGTAC 5911 ||||||||||| ||||| | ||||||||||||||||| ||||| |||| |||||||||| Sbjct 454 AAGGCGCTCTAAAACAATATGTATGGCGACATTGCTAAGGTGGTCATCACCCGCAAGTAC 395 Query 5912 ACGCCTGAGGAGGTTTTCGATTTCGCCGTTCGATACTTCTCCTGGGCAGAGAGTGCAGCA 5971 || |||||||| ||||| || ||| | | |||||||||||| ||||| ||||||| | | Sbjct 394 ACCCCTGAGGAAGTTTTTGACTTCTCTGGTCGATACTTCTCTTGGGCGGAGAGTGAGGAA 335 Query 5972 ATCAAGGCAGCCGAGACAGCGTCATTCCAGGGCGTAGTAACTGAACACCTCATACACAAG 6031 || |||| ||||| || || ||||||| || | ||| |||| |||| || Sbjct 334 ATTGAGGCTATTGAGACGGCAGCACTCCAGGGGGTTGATGGAGAAAGCCTCGTACATAAA 275 Query 6032 CCTCGAGTGTTCACCTTA-ACGGGTTTGGCGCTCTTCATGGGTGTTAACATCAATAGATT 6090 || ||||| ||||||| | |||| | ||||||| ||||| |||||| || | ||| Sbjct 274 CCGCGAGTATTCACCTGAGGCGGGGCTTGCGCTCTACATGGATGTTAATGTCTTCATATT 215 Query 6091 CGCTCGCTGGCGTACTGAGGCTGGATACTCTGATGTGATGGAATTCA-TTGATAACGTAA 6149 | |||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||| Sbjct 214 CCCTCGCTGGCGCACTGAGGCTGGATACTCTGATGTTAGGGAATTCATTTGATAACGTAT 155 Query 6150 TCTACGAGCAGAAATATCAGCTTGGTGTTGCAGGCATCATTAACTCCACCATTGTTGGTA 6209 || || | || ||||| || ||||||| || || | || ||||||| | | ||| | Sbjct 154 TCAACAATCACAAATACCATCTTGGTGCAGCCGGAAGTATCAACTCCAACTTCTCTGGGA 95 Query 6210 AAGA-GTTGGGAATCGACAAGCCGCAGGAGATCACCATTAGCAATAACTCTACGGCTA-A 6267 |||| |||| || || || || | |||||| | ||| | | ||| ||||| |||| | Sbjct 94 AAGATCTTGGATATTGATAA-CCACTGGAGATTAACATCATTAGTAAGTCTACAGCTACA 36 Query 6268 CGATGTTGATAGCATGAAGGAAGCGCTTGAATCTG 6302 | || |||||||||||| |||| || ||||||| Sbjct 35 CTCTGCTGATAGCATGAATGAAGTACTGGAATCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147664794238546