Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq20 123 3e-23 seq22 120 4e-22 seq17 120 4e-22 seq190 96.9 4e-15 seq113 86.0 8e-12 >seq20 Length=25211774 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| ||||| | || |||||||||||||| || ||||| || || ||||| | Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| ||||| || || ||||||||||| ||||| || || || ||||||| Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600 Query 32803 CAATAAGTCTCTCTCC 32818 | | || || ||||| Sbjct 21308601 CTACAACTCGTTCTCC 21308616 >seq22 Length=17426531 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| ||| | || ||||| |||||||| | Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| ||||||||||| ||||| || || || || || ||||| || | || || | Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGaa 62087 | || | |||||||| | ||| ||||||| | | || | ||| || |||| Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAAATCATCAGGAA 1394490 Score = 118 bits (130), Expect = 1e-21 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| | Sbjct 1398045 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATG 1398104 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62301 |||||||||||||||| || ||||||||||| ||||| ||||| || || Sbjct 1398105 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGC 1398154 Score = 107 bits (118), Expect = 2e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 ||||||| | ||| |||||||||||||||| || || || || || || || || | | Sbjct 1425065 CACTAAACACTTTCTTTGTTTCTTTGTGTAAGTTGGAGACTGCAATCCTTGCTGCCAAGA 1425124 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || ||||| | ||||| | ||||| ||| | || || || | || |||| Sbjct 1425125 TGGCATAGTCAGGATGCTTAGTAGTCAAGGTGGCAGCTGTCTCAGCAGCTAATGTATCCA 1425184 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTT 63983 ||| ||||| || || ||| | || | |||||||| |||||||| | |||| Sbjct 1425185 GTTCCACCGTAGTGACCCCACTGTAGAGGCCTTGGATTACCTTCATGGTGATTT 1425238 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| || ||||| |||||||||||||| | || |||||||||| | Sbjct 1409097 CTCCACTCGTTTCATGAAAAGATCTGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 1409156 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 1409157 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 1409216 Query 63187 CGGTTCCAAGTATATGGC 63204 ||||| | ||| || || Sbjct 1409217 AGGTTCTAGGTAAATAGC 1409234 >seq17 Length=26966924 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| |||||||| ||||| ||||| | ||| || Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| |||||||| ||||||| |||||||||||| |||||||| Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGC 9450884 >seq190 Length=3085523 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 30452 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 30511 ||| ||||||| | |||||||||| | | ||| | | || |||||||| |||| ||| Sbjct 695275 TTGAACTTCTTCAATTTCTGGATAAAAAACCTGTTCACAAATGAGCTGAGCAATTCCATC 695334 Query 30512 CCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 30571 ||| | || || | ||| | ||| || ||| | | || || || | |||||| Sbjct 695335 ACCCTTTTTCACTTCAAATTTCTCTTTGTCAAAATTGAACAATATAACACCAACATTTCC 695394 Query 30572 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 30628 |||||||||||| ||||| ||||| |||||| ||| || | |||| | || || Sbjct 695395 CCTATAATCTTCATCTATGACACCAGCTCCTACATCGATGAAGTGTTTTGCAGCCAAGCC 695454 Query 30629 AGACCTAGGAGCTATTCTACCATAGCA 30655 ||| | ||||||| ||| |||||||| Sbjct 695455 AGAACGTGGAGCTACTCTTCCATAGCA 695481 >seq113 Length=6198913 Score = 86.0 bits (94), Expect = 8e-12 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 30452 TTGTACTTCTTTCAGTTCTGGATAATATATAC-GTTGATAGATTAGCTGAGCTATTCTAT 30510 ||| ||||||| | |||||||||| | | | | | | || |||||||| |||| || Sbjct 4701979 TTGAACTTCTTCAATTTCTGGATAAAAAAATCTGCTCACGAATGAGCTGAGCAATTCGAT 4702038 Query 30511 CCCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTC 30570 | ||| | || || | || | ||| ||| ||| | | || || || | ||||| Sbjct 4702039 CACCCTTTTTCACTTCAAACTTCTCTTTGCCAAAATTGAGCAATATAACACCAAAATTTC 4702098 Query 30571 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 30627 ||||||||||||| ||||| ||||| |||||| |||||| | |||| | || | Sbjct 4702099 CCCTATAATCTTCATCTATGACACCAGCTCCTACATCAATGAAGTGTTTTGCAGCCAAGC 4702158 Query 30628 CAGACCTAGGAGCTATTCTACCATAGCA 30655 || | | ||||||| ||| |||||||| Sbjct 4702159 CAAAACGTGGAGCTACTCTTCCATAGCA 4702186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633115645362800