Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq66 89.7 4e-13 >seq66 Length=5789316 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| | || ||||| ||| Sbjct 2649440 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAGT 2649499 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| || ||||| ||||| Sbjct 2649500 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCACCTGATCAG 2649559 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| ||||| ||| | || ||| ||| ||| | || || |||||| Sbjct 2649560 CAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 2649619 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 2649620 ATCCAGAAGGAGTCCAC 2649636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419394509446045