Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq66 170 4e-37 seq147 147 4e-30 seq91 134 3e-26 seq108 84.2 4e-11 seq36 84.2 4e-11 >seq66 Length=5789316 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || || || || || | |||||||| Sbjct 2649876 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 2649817 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || || || || ||||| || ||||||||||||||||| || Sbjct 2649816 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 2649757 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| |||||||||||| | || || |||| ||||||||| || Sbjct 2649756 ATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2649697 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 2649696 CCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668 Score = 163 bits (180), Expect = 5e-35 Identities = 184/245 (75%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || |||||||| || || || Sbjct 2649666 CCACCTCGGAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649607 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || | || || || || ||||| Sbjct 2649606 AGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGT 2649547 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| |||||||||||| | || || Sbjct 2649546 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 2649487 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTATAC 68474 |||||||||||||| || || || |||||||| || || ||||||||| | |||||| | Sbjct 2649486 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTGT-CTATTACAA 2649428 Query 68475 CCAAG 68479 | ||| Sbjct 2649427 CAAAG 2649423 >seq147 Length=2532799 Score = 147 bits (162), Expect = 4e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || || || || || | |||||||| Sbjct 2384157 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 2384098 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| || || || || |||||||| || ||||| || || || || Sbjct 2384097 AGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGG 2384038 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || ||| ||||| || | || || |||| ||| ||||| || Sbjct 2384037 ATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTCTTG 2383978 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| |||||||| Sbjct 2383977 CCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949 >seq91 Length=4965619 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | |||||| | || || |||||||| ||||||||||| || || || Sbjct 1585549 CCACCCCGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAT 1585608 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || |||||||| | |||||| || || || || |||||||| || || ||| | Sbjct 1585609 AAAGTTTGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGC 1585668 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| ||||| || || || || || | | ||| || Sbjct 1585669 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACC 1585728 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | | ||||||||||| ||||| ||||| || | ||| |||||||| Sbjct 1585729 TTGAGTGTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775 >seq108 Length=2208520 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 || |||||||| || || || || ||||| |||||||||||| ||| | || || || Sbjct 1658957 CCCTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTC-GCTGGGCTCGACCTC 1659015 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || ||||| |||||||| ||||| |||||||| Sbjct 1659016 GAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1659060 >seq36 Length=17049061 Score = 84.2 bits (92), Expect = 4e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 68238 CCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT 68297 |||| ||| | ||| | | || || || ||||| ||||| ||||| || || || | Sbjct 13827120 CCGCAAAGTCCCAACAGTAGGTAAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAG 13827179 Query 68298 GTCCTCCCATCTTCTAACTGCTT-CCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAAT 68356 || ||| |||||| | |||||| |||||| || || ||||||||||| | || |||| Sbjct 13827180 GTATTCC-ATCTTCCAGCTGCTTTCCCGGCAAAGATCAGTCTTTGTTGACCAGGAAGAAT 13827238 Query 68357 GCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTC 68416 || || || | || ||||| ||||| || || ||||| || || || | Sbjct 13827239 TCCATCTTTCTTCTGGATCTTGGCCTTTACATTTTCTATGGTATCCAAGACTTTAACCTT 13827298 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || | | ||||| ||| ||| |||||||| Sbjct 13827299 GAGGGTGATGGTCTTCCTTGAAAGGGTTTTGGTGAAAATCTGCAT 13827343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920871358385960