Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq66 170 4e-37
seq147 147 4e-30
seq91 134 3e-26
seq108 84.2 4e-11
seq36 84.2 4e-11
>seq66
Length=5789316
Score = 170 bits (188), Expect = 4e-37
Identities = 163/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || |||||||| || |||||||| || || || || || | ||||||||
Sbjct 2649876 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 2649817
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || || || || || || || ||||| || ||||||||||||||||| ||
Sbjct 2649816 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 2649757
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| |||||||| |||||||||||| | || || |||| ||||||||| ||
Sbjct 2649756 ATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 2649697
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || |||||||| ||||| ||||||||
Sbjct 2649696 CCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668
Score = 163 bits (180), Expect = 5e-35
Identities = 184/245 (75%), Gaps = 1/245 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| ||| || |||||||| || |||||||| || || ||
Sbjct 2649666 CCACCTCGGAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649607
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| || || || || | || || || || |||||
Sbjct 2649606 AGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGT 2649547
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| |||||||| |||||||||||| | || ||
Sbjct 2649546 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 2649487
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTATAC 68474
|||||||||||||| || || || |||||||| || || ||||||||| | |||||| |
Sbjct 2649486 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTGT-CTATTACAA 2649428
Query 68475 CCAAG 68479
| |||
Sbjct 2649427 CAAAG 2649423
>seq147
Length=2532799
Score = 147 bits (162), Expect = 4e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || ||||||||||| |||||||| || || || || || | ||||||||
Sbjct 2384157 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 2384098
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || ||||| || || || || |||||||| || ||||| || || || ||
Sbjct 2384097 AGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGG 2384038
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| ||||| || ||| ||||| || | || || |||| ||| ||||| ||
Sbjct 2384037 ATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTCTTG 2383978
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || |||||||| ||||| ||||||||
Sbjct 2383977 CCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949
>seq91
Length=4965619
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| | |||||| | || || |||||||| ||||||||||| || || ||
Sbjct 1585549 CCACCCCGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAT 1585608
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || |||||||| | |||||| || || || || |||||||| || || ||| |
Sbjct 1585609 AAAGTTTGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGC 1585668
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| |||||||| || || ||||| ||||| || || || || || | | ||| ||
Sbjct 1585669 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACC 1585728
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| | ||||||||||| ||||| ||||| || | ||| ||||||||
Sbjct 1585729 TTGAGTGTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775
>seq108
Length=2208520
Score = 84.2 bits (92), Expect = 4e-11
Identities = 83/105 (79%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416
|| |||||||| || || || || ||||| |||||||||||| ||| | || || ||
Sbjct 1658957 CCCTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTC-GCTGGGCTCGACCTC 1659015
Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || ||||| |||||||| ||||| ||||||||
Sbjct 1659016 GAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1659060
>seq36
Length=17049061
Score = 84.2 bits (92), Expect = 4e-11
Identities = 155/225 (69%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 68238 CCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT 68297
|||| ||| | ||| | | || || || ||||| ||||| ||||| || || || |
Sbjct 13827120 CCGCAAAGTCCCAACAGTAGGTAAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAG 13827179
Query 68298 GTCCTCCCATCTTCTAACTGCTT-CCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAAT 68356
|| ||| |||||| | |||||| |||||| || || ||||||||||| | || ||||
Sbjct 13827180 GTATTCC-ATCTTCCAGCTGCTTTCCCGGCAAAGATCAGTCTTTGTTGACCAGGAAGAAT 13827238
Query 68357 GCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTC 68416
|| || || | || ||||| ||||| || || ||||| || || || |
Sbjct 13827239 TCCATCTTTCTTCTGGATCTTGGCCTTTACATTTTCTATGGTATCCAAGACTTTAACCTT 13827298
Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || | | ||||| ||| ||| ||||||||
Sbjct 13827299 GAGGGTGATGGTCTTCCTTGAAAGGGTTTTGGTGAAAATCTGCAT 13827343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 920871358385960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |