Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq91 82.4 5e-11 >seq91 Length=4965619 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || |||||||| | ||||| |||||||| || | | ||| || | Sbjct 1585775 ATGCAGATTTTCATTAAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCG 1585716 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGG--TG-TACCTGTAAAC 21950 || || ||| || | ||| || || ||||| || || || |||||| | Sbjct 1585715 GATACTATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTG---AT 1585659 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| ||||||||||| || || || |||||| | ||||| | | || ||| Sbjct 1585658 CAGCAAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTAC 1585599 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || || || ||||| || ||||||||| | ||||| Sbjct 1585598 AACATCCAAAAGGAGTCCACTCTTCATCTAGTATT 1585564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357840255633322