Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq147 131 4e-25 seq91 122 2e-22 seq36 113 1e-19 seq148 100 7e-16 seq84 89.7 1e-12 seq108 84.2 5e-11 >seq147 Length=2532799 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| ||||| ||||| || ||||| | Sbjct 2384175 CCACCCCTGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 2384116 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || |||||||||||||| | ||| || ||| Sbjct 2384115 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGG 2384056 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || |||||||||||||| || || ||||| || || || | ||| || | || || Sbjct 2384055 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACC 2383996 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| |||||||| ||||| ||||| |||||||| Sbjct 2383995 TCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949 Score = 127 bits (140), Expect = 5e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | || || ||||||||| Sbjct 2383911 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAG 2383852 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| || |||||||||||||| || || ||||| || Sbjct 2383851 ATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTC 2383792 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || ||||| ||||| || |||| ||||| ||| Sbjct 2383791 TCAATGGTATCACTGGGCTCAACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACG 2383732 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 2383731 AAGATCTGCATTCTG 2383717 >seq91 Length=4965619 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | ||| ||||||| ||| || |||||||| || ||||| | Sbjct 1585549 CCACCCCGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAT 1585608 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || |||| ||||| | || || || || |||||||| | || ||| | | | Sbjct 1585609 AAAGTTTGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGC 1585668 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || ||||| |||| ||| | ||| || Sbjct 1585669 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACC 1585728 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||| || ||||| || || || || | ||| |||||||| Sbjct 1585729 TTGAGTGTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775 >seq36 Length=17049061 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||| | || ||||| | || || ||||||||| Sbjct 7362845 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCACCTGCTTGCCTGCGAAG 7362904 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | || || || |||||||||||||| || || ||||| || Sbjct 7362905 ATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGGCCTTCACTTTC 7362964 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | | || || || || | || ||||| |||||||| ||||| | | Sbjct 7362965 TCAATGGTATCAATGGGCTCCACCTCCAGGATAATGGTCTTGCCGGTCAGGGTCTTCATG 7363024 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 7363025 AAGATCTGCATTCTG 7363039 >seq148 Length=5416653 Score = 100 bits (110), Expect = 7e-16 Identities = 120/162 (74%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 288313 CGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCT 288372 ||||| | ||| | || || || || |||||||| | || ||| | ||| |||||| Sbjct 991103 CGTCCATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTGGAATTCCT 991162 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAG- 288431 || ||||||||||| || || || || |||||||||| ||| | ||| |||||||| Sbjct 991163 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGAGGGTTCAACTTCGAGT 991222 Query 288432 CGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| || ||||| || || || ||||| || |||||||| Sbjct 991223 TATGATGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264 >seq84 Length=7487594 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | ||| ||||||| ||| || ||||| || || | || | Sbjct 757418 CCACCCCAAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAATCAGAT 757477 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||| | | || || || || ||| | || | || ||| | || Sbjct 757478 AAAGTACATCCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGA 757537 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| ||| | ||| || Sbjct 757538 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACA 757597 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| |||| || ||||| || || || |||| ||| |||| ||| Sbjct 757598 TTGAGTATGATGGTTTTCCCCGTAAGGGTTTTGATGAAAATCTTCAT 757644 >seq108 Length=2208520 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || || ||||||||||| ||||| || || || || | ||||| | || || ||| Sbjct 1658957 CCCTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 1659016 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 1659017 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1659060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178669052005854