Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq147 125 7e-24
seq66 118 1e-21
seq36 105 7e-18
seq108 84.2 2e-11
seq1 84.2 2e-11
>seq147
Length=2532799
Score = 125 bits (138), Expect = 7e-24
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || |||||||| || | | ||||| | ||||| |||||||||||
Sbjct 2384145 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2384086
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || |||| ||||||||||||||| || || ||||| || || || || |||
Sbjct 2384085 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 2384026
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | ||||||| || ||||| || | || | |||||||||||||| ||
Sbjct 2384025 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTCAGGGTC 2383966
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 2383965 TTCACGAAGATCTGCAT 2383949
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || |||||||| || | | ||||| | ||||| |||||||||||
Sbjct 2383917 GTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2383858
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| | || |||| ||||||||| ||||| || || ||||| || || || || |||
Sbjct 2383857 GCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 2383798
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | ||||||| || || || |||| ||| | ||||||||| ||||| ||
Sbjct 2383797 ACATTCTCAATGGTATCACTGGGCTCAACCTCTAGAGTGATGGTCTTGCCAGTCAAGGTC 2383738
Query 64427 TTTACGAAAATTTGCATT 64444
|| ||||| || ||||||
Sbjct 2383737 TTCACGAAGATCTGCATT 2383720
>seq66
Length=5789316
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || | ||| | ||||| || || | || || || || || |||||||| || |
Sbjct 2649895 ACCTCCCCTCAAACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2649836
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||| || | ||||| ||||||||||| ||| | || |||| ||||||||| || ||
Sbjct 2649835 CAGGGTACGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGG 2649776
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| ||||| || || || || || ||| ||| ||| | || |||| || |||||
Sbjct 2649775 AATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 2649716
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||||||| |||| || || ||||| || |||||
Sbjct 2649715 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | || || || || || |||||||| || | | ||| || | |||
Sbjct 2649651 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 2649592
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || | || |||||| || || || || || || || ||
Sbjct 2649591 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCC 2649532
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || ||||| || | || | ||||
Sbjct 2649531 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 2649472
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||||| |||| || || || || || ||||||
Sbjct 2649471 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 2649439
>seq36
Length=17049061
Score = 105 bits (116), Expect = 7e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||| ||| || || ||||| || |||||||| || | | ||| | | |||
Sbjct 7362824 AGAACCAGACGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATCT 7362883
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||||||||| || | || |||| ||||||||| |||||||| || ||||| ||
Sbjct 7362884 TCCACCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCC 7362943
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || ||| | |||||| || ||||| || | | | ||||
Sbjct 7362944 TGGATCTTGGCCTTCACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGGATAATGGTC 7363003
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|||||||||| || || | ||| || ||||||
Sbjct 7363004 TTGCCGGTCAGGGTCTTCATGAAGATCTGCATT 7363036
>seq108
Length=2208520
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313
|||| || |||||||| |||| || |||||| | ||||| ||||||||||| ||| | |
Sbjct 1658710 CTTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAATA 1658769
Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342
| |||||||||||||| || || || |||
Sbjct 1658770 TCAGCCGCTGCTGGTCAGGTGGGATGCCT 1658798
>seq1
Length=68039765
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285
||||| | ||||||||||| || || || ||||| |||||||| || | ||| ||
Sbjct 38753664 AATCTTAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTACGT 38753605
Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345
| | ||| |||||||| || || | || || | ||||| || ||||||||||||||
Sbjct 38753604 CCATTTTCCAGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 38753545
Query 64346 TTTTCTTGTATTTTTTGCTTTACA 64369
|| || || || || |||||||
Sbjct 38753544 TTATCCTGAATCTTGACCTTTACA 38753521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499237633206920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |