Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_010956.1 Length=35083 Score E Sequences producing significant alignments: (Bits) Value seq4931 333 6e-87 >seq4931 Length=27746 Score = 333 bits (368), Expect = 6e-87 Identities = 1223/1915 (64%), Gaps = 42/1915 (2%) Strand=Plus/Plus Query 18713 GCCAAACAGGCCCAACTACATCGGCTTCAGGGACAACTTTGTGGGTCTCATGTACTATAA 18772 |||||||||||| || || || || || ||||| |||||| | || | |||| ||||| Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203 Query 18773 CAGCACTGGCAACATGGGTGTGCTGGCTGGTCAAGCATCTCAGTTGAATGCTGTGGTCGA 18832 ||| | | |||| ||||||| | || |||||| | || ||| | |||||||| |||| Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263 Query 18833 CTTGCAAGACAGAAACACAGAGCTGTCTTACCAGCTCTTGCTAGATTCTCTGGGTGACAG 18892 | | ||||||||||| ||||| |||| || ||||| || ||||| | | || || Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323 Query 18893 AACCAGATACTTTAGCATGTGGAACTCTGCAGTGGACAGTTATGATCCTGATGTCAGGAT 18952 ||| |||| | ||| ||||||| || ||||| |||||||| || ||| | || Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383 Query 18953 TATTGAAAATCACGGTGTGGAAGATGAACTTCCAAACTATTGCTTCCCATTGGATGGAGC 19012 || || ||| || || ||||| ||||||||||| |||||||| || || |||| Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATG 16443 Query 19013 TGGCACTAATGCTACCTACCAAGGTGTAAAAGTTAAAAATGGCCAAGATGGAGATGTAAA 19072 | ||| || | || | ||| || | ||||||| ||| Sbjct 16444 TTCTCCTATTGAT---TATACTGCTGTTAA---TCAAAATGGACAA-------------- 16483 Query 19073 CGCAGATTGGGAAAAAGATCCAAATCTTGCTTCACGAAACCAAATATGCAAGGGTAACAT 19132 ||| || || || | || || | | | ||| |||| || || | Sbjct 16484 -GCA-ATCAATAACAATAACC--------CTGCGCAGGTTCTTATAGGCAAAGGAAATGT 16533 Query 19133 CTTCGCCATGGAGATCAACCTCCAGGCCAACCTGTGGAAGAGTTTTCTGTACTCGAATGT 19192 |||||| |||||| | ||||||||||||||||| ||||||||| || ||| | Sbjct 16534 TGAATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATAT 16593 Query 19193 GGCCCTGTACCTGCCCGACTCATACAAGTACACGCCGGCCAACGTCACGCTGCCCGCCAA 19252 || ||||| |||||||| | || ||| || || || || |||| || Sbjct 16594 CGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCC--GCAG 16651 Query 19253 TACCAACACC--TACGAGTACATGAACGGCCGCGTGGTAGCCCCCTCGCTGGTGGACGCC 19310 | || | | || | |||||||| ||| | |||| ||||| || | Sbjct 16652 GATCAGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGAT 16711 Query 19311 TACATCAACATCGGCGCCCGGTGGTCGCTGGACCCCATGGACAACGTCAACCCATTCAAC 19370 || |||||||| || || ||||||| | || ||||||| || || ||||| || Sbjct 16712 TATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAAT 16771 Query 19371 CACCACCGCAACGCGGGCCTGCGTTACCGCTCCATGCTTCTGGGCAACGGCCGCTACGTG 19430 || ||| | || | || || | ||| | || ||| | || || || ||||| | Sbjct 16772 CATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCT 16831 Query 19431 CCCTTCCACATCCAAGTGCCCCAAAAGTTCTTTGCCATCAAGAACCTGCTCCTGCTCCCC 19490 |||| || || || || || |||||||| ||||| | || | |||| ||||| || Sbjct 16832 TCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCG 16891 Query 19491 GGCTCCTACACCTACGAGTGGAACTTCCGCAAGGATGTCAACATGATCCTGCAGAGTTCC 19550 || || |||| ||||| ||| || | || ||||| |||||||| |||||||| | Sbjct 16892 GGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACT 16951 Query 19551 CTCGGAAACGACCTGCGCGTCGACGGCGCCTCCGTCCGCTTCGACAGCGTCAACCTCTAC 19610 || || || || ||| | | ||||| || || || || |||||| | | ||| | Sbjct 16952 CTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTT 17011 Query 19611 GCCACATTCTTCCCCATGGCGCACAACACCGCCTCCACCCTGGAAGCCATGCTGCGCAAC 19670 || || ||||| || ||| | || ||||| || || || |||||| | ||||| ||||| Sbjct 17012 GCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAAT 17071 Query 19671 GACACCAACGACCAGTCCTTCAACGACTACCTCTCGGCCGCCAACATGCTCTACCCCATC 19730 || ||||| ||||||||| |||||| || || || |||||||| || | || Sbjct 17072 GAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATT 17131 Query 19731 CCGGCCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCGCAACTGGGCCGCCTTCCGC 19790 || | | | | || ||||| ||||| | Sbjct 17132 CCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGA 17191 Query 19791 GGCTGGAGTTTCACCCGGCTCAAGACCA-AAGAAACTCCCTCCCTCGGCTCGGGTTTCGA 19849 || ||| || || | || || || | | ||||| || || | ||||| | || || Sbjct 17192 GGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGA 17250 Query 19850 TCCCTACTTTGTATACTCGGGTTCCATCCCCTACCTCGACGGGACCTTCTACCTCAACCA 19909 || |||||| |||||||| || ||||| || || | |||||| || | || Sbjct 17251 CCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCA 17310 Query 19910 CACCTTCAAGAAGGTCTCCATCATGTTCGACTCCTCGGTCAGCTGGCCCGGCAACGACCG 19969 ||| ||| ||||| |||| ||| || || || || || ||||| || || ||| | Sbjct 17311 CACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAG 17370 Query 19970 GCTGCTCACGCCGAACGAGTTCGAGATCAAGCGCAGTGTCGACGGGGAGGGCTACAATGT 20029 || | | || || || || | || || | || |||| ||| ||||| || Sbjct 17371 ACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACAC 17430 Query 20030 GGCCCAATGCAACATGACCAAGGACTGGTTCCTCGTCCAGATGCTCTCCCACTACAACAT 20089 | || ||| || || ||||| |||| | | || |||||| | |||||||| || Sbjct 17431 CTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATAT 17490 Query 20090 CGGCTACCAGGGCTTCCACGTGCCCGAGGGCTACAAGGACCGCATGTACTCCTTCTTCCG 20149 ||| ||||| || || ||| | ||| | || || || | |||| ||||| || | Sbjct 17491 CGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAG 17550 Query 20150 CAACTTCCAGCCCATGAGCAGGCAGGTGGTCGAT-GAGATCA-ACTACAAGGACTACAAG 20207 || || | |||||| | || || || || ||| | | | || || | || | Sbjct 17551 AAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAA--AATATCAA 17608 Query 20208 GCCGTCACCCTGCCCTTCCAGCACAACAACTCGGGCTTCACCGGCTACCTTGCACCCACC 20267 |||| | || | ||||| || || || || || | | | || |||| Sbjct 17609 CCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTTT 17668 Query 20268 ATGCGTCAGGGGCAGCCCTACCCCGCCAACTTCCCCTATCCTCTCATCGGCCAGACA-GC 20326 ||| || || || || || ||| |||| || | || |||||||| | ||| || Sbjct 17669 GGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGA-ACAGGC 17727 Query 20327 CGTGCCCTCTGTCACCCAGAAAAAGTTCCTCTGCGACAGGGTCATGTGGCGCATCCCCTT 20386 | | | || |||| ||| || | || ||||| ||||| | || || || Sbjct 17728 AGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTT 17787 Query 20387 CTCCAGCAACTTCATGTCCATGGGCGCCCTCACCGACCTGGGTCAGAACATGCTCTATGC 20446 |||| |||||| ||||||||||| | || || || ||||| || || |||| ||||| Sbjct 17788 CTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGC 17847 Query 20447 CAACTCGGCCCACGCGCTCGACATGACCTTCGAGGTGGACCCCATGGATGAGCCCACCCT 20506 || || || || || | |||||||| |||| || || | ||||| || || || Sbjct 17848 AAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTA 17907 Query 20507 CCTCTATCTTCTCTTCGAAGTTTTCGACGTGGTCAGAGTGCACCAGCCGCACCGCGGCGT 20566 ||| | || || ||||| || ||| || ||||||||| ||||| || || || || Sbjct 17908 TCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGT 17967 Query 20567 CATCGAGGCCGTCTACCTGCGCACGCCCTTCTCCGCCGGCAACGCCACCACCTAA 20621 ||| || | | || || | || ||||| || || || |||||| | || ||| Sbjct 17968 CATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022 Score = 105 bits (116), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 17785 CGAAGATGGCCACCCCCTCGATGATGCCGCAGTGGGCGTACATGCACATCGCCGGGCAGG 17844 ||||||||||||| ||||||||| | ||||| ||| | ||| | || ||||| || || | Sbjct 15309 CGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAG 15368 Query 17845 ACGCCTCGGAGTACCTGAGCCCGGGTCTGGTG-CAGTTTGCCCGCGCCACCGACACGTAC 17903 | || || || || | | | | | | ||| || ||||| |||| ||||| |||||| Sbjct 15369 ATGCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427 Query 17904 TTCAGCCTGGGCAACAAGTTTAGGAACCCCACGGTGGCCCCGACCCACGATGTGACCACG 17963 || ||| || | || ||||| || || ||||| || ||||| |||||||| || ||| Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487 Query 17964 GA 17965 || Sbjct 15488 GA 15489 Score = 80.6 bits (88), Expect = 6e-11 Identities = 124/176 (70%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 6480 AGGGGTTGAGGGGCGGACCCCAGGGCATGGGATGAGTGAGGGCGGAGGCGTACATGCCGC 6539 |||| || || || || || ||||||||||||| || | ||| ||| ||||| ||| Sbjct 6037 AGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGG 6096 Query 6540 AGATGTCGTAGACATAGATGGGCTCCGAGAGGATGCCGATGTAGGTGGGATAACAGCGCC 6599 | || || || ||||| || || ||| | | || ||||| ||||| || || || | Sbjct 6097 AAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTC 6156 Query 6600 CCCCGCGGATGCTGGCGCGCACGTAGTCATACAACTCGTGCGAGGGGGCCAAGAAG 6655 |||| | |||||| | | || | ||||| | ||||| || |||||| ||||| Sbjct 6157 CCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCC-AGAAG 6211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112057181829970