Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_010956.1
Length=35083
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 333 6e-87
>seq4931
Length=27746
Score = 333 bits (368), Expect = 6e-87
Identities = 1223/1915 (64%), Gaps = 42/1915 (2%)
Strand=Plus/Plus
Query 18713 GCCAAACAGGCCCAACTACATCGGCTTCAGGGACAACTTTGTGGGTCTCATGTACTATAA 18772
|||||||||||| || || || || || ||||| |||||| | || | |||| |||||
Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203
Query 18773 CAGCACTGGCAACATGGGTGTGCTGGCTGGTCAAGCATCTCAGTTGAATGCTGTGGTCGA 18832
||| | | |||| ||||||| | || |||||| | || ||| | |||||||| ||||
Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263
Query 18833 CTTGCAAGACAGAAACACAGAGCTGTCTTACCAGCTCTTGCTAGATTCTCTGGGTGACAG 18892
| | ||||||||||| ||||| |||| || ||||| || ||||| | | || ||
Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323
Query 18893 AACCAGATACTTTAGCATGTGGAACTCTGCAGTGGACAGTTATGATCCTGATGTCAGGAT 18952
||| |||| | ||| ||||||| || ||||| |||||||| || ||| | ||
Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383
Query 18953 TATTGAAAATCACGGTGTGGAAGATGAACTTCCAAACTATTGCTTCCCATTGGATGGAGC 19012
|| || ||| || || ||||| ||||||||||| |||||||| || || ||||
Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATG 16443
Query 19013 TGGCACTAATGCTACCTACCAAGGTGTAAAAGTTAAAAATGGCCAAGATGGAGATGTAAA 19072
| ||| || | || | ||| || | ||||||| |||
Sbjct 16444 TTCTCCTATTGAT---TATACTGCTGTTAA---TCAAAATGGACAA-------------- 16483
Query 19073 CGCAGATTGGGAAAAAGATCCAAATCTTGCTTCACGAAACCAAATATGCAAGGGTAACAT 19132
||| || || || | || || | | | ||| |||| || || |
Sbjct 16484 -GCA-ATCAATAACAATAACC--------CTGCGCAGGTTCTTATAGGCAAAGGAAATGT 16533
Query 19133 CTTCGCCATGGAGATCAACCTCCAGGCCAACCTGTGGAAGAGTTTTCTGTACTCGAATGT 19192
|||||| |||||| | ||||||||||||||||| ||||||||| || ||| |
Sbjct 16534 TGAATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATAT 16593
Query 19193 GGCCCTGTACCTGCCCGACTCATACAAGTACACGCCGGCCAACGTCACGCTGCCCGCCAA 19252
|| ||||| |||||||| | || ||| || || || || |||| ||
Sbjct 16594 CGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCC--GCAG 16651
Query 19253 TACCAACACC--TACGAGTACATGAACGGCCGCGTGGTAGCCCCCTCGCTGGTGGACGCC 19310
| || | | || | |||||||| ||| | |||| ||||| || |
Sbjct 16652 GATCAGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGAT 16711
Query 19311 TACATCAACATCGGCGCCCGGTGGTCGCTGGACCCCATGGACAACGTCAACCCATTCAAC 19370
|| |||||||| || || ||||||| | || ||||||| || || ||||| ||
Sbjct 16712 TATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAAT 16771
Query 19371 CACCACCGCAACGCGGGCCTGCGTTACCGCTCCATGCTTCTGGGCAACGGCCGCTACGTG 19430
|| ||| | || | || || | ||| | || ||| | || || || ||||| |
Sbjct 16772 CATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCT 16831
Query 19431 CCCTTCCACATCCAAGTGCCCCAAAAGTTCTTTGCCATCAAGAACCTGCTCCTGCTCCCC 19490
|||| || || || || || |||||||| ||||| | || | |||| ||||| ||
Sbjct 16832 TCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCG 16891
Query 19491 GGCTCCTACACCTACGAGTGGAACTTCCGCAAGGATGTCAACATGATCCTGCAGAGTTCC 19550
|| || |||| ||||| ||| || | || ||||| |||||||| |||||||| |
Sbjct 16892 GGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACT 16951
Query 19551 CTCGGAAACGACCTGCGCGTCGACGGCGCCTCCGTCCGCTTCGACAGCGTCAACCTCTAC 19610
|| || || || ||| | | ||||| || || || || |||||| | | ||| |
Sbjct 16952 CTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTT 17011
Query 19611 GCCACATTCTTCCCCATGGCGCACAACACCGCCTCCACCCTGGAAGCCATGCTGCGCAAC 19670
|| || ||||| || ||| | || ||||| || || || |||||| | ||||| |||||
Sbjct 17012 GCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAAT 17071
Query 19671 GACACCAACGACCAGTCCTTCAACGACTACCTCTCGGCCGCCAACATGCTCTACCCCATC 19730
|| ||||| ||||||||| |||||| || || || |||||||| || | ||
Sbjct 17072 GAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATT 17131
Query 19731 CCGGCCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCGCAACTGGGCCGCCTTCCGC 19790
|| | | | | || ||||| ||||| |
Sbjct 17132 CCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGA 17191
Query 19791 GGCTGGAGTTTCACCCGGCTCAAGACCA-AAGAAACTCCCTCCCTCGGCTCGGGTTTCGA 19849
|| ||| || || | || || || | | ||||| || || | ||||| | || ||
Sbjct 17192 GGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGA 17250
Query 19850 TCCCTACTTTGTATACTCGGGTTCCATCCCCTACCTCGACGGGACCTTCTACCTCAACCA 19909
|| |||||| |||||||| || ||||| || || | |||||| || | ||
Sbjct 17251 CCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCA 17310
Query 19910 CACCTTCAAGAAGGTCTCCATCATGTTCGACTCCTCGGTCAGCTGGCCCGGCAACGACCG 19969
||| ||| ||||| |||| ||| || || || || || ||||| || || ||| |
Sbjct 17311 CACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAG 17370
Query 19970 GCTGCTCACGCCGAACGAGTTCGAGATCAAGCGCAGTGTCGACGGGGAGGGCTACAATGT 20029
|| | | || || || || | || || | || |||| ||| ||||| ||
Sbjct 17371 ACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACAC 17430
Query 20030 GGCCCAATGCAACATGACCAAGGACTGGTTCCTCGTCCAGATGCTCTCCCACTACAACAT 20089
| || ||| || || ||||| |||| | | || |||||| | |||||||| ||
Sbjct 17431 CTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATAT 17490
Query 20090 CGGCTACCAGGGCTTCCACGTGCCCGAGGGCTACAAGGACCGCATGTACTCCTTCTTCCG 20149
||| ||||| || || ||| | ||| | || || || | |||| ||||| || |
Sbjct 17491 CGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAG 17550
Query 20150 CAACTTCCAGCCCATGAGCAGGCAGGTGGTCGAT-GAGATCA-ACTACAAGGACTACAAG 20207
|| || | |||||| | || || || || ||| | | | || || | || |
Sbjct 17551 AAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAA--AATATCAA 17608
Query 20208 GCCGTCACCCTGCCCTTCCAGCACAACAACTCGGGCTTCACCGGCTACCTTGCACCCACC 20267
|||| | || | ||||| || || || || || | | | || ||||
Sbjct 17609 CCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTTT 17668
Query 20268 ATGCGTCAGGGGCAGCCCTACCCCGCCAACTTCCCCTATCCTCTCATCGGCCAGACA-GC 20326
||| || || || || || ||| |||| || | || |||||||| | ||| ||
Sbjct 17669 GGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGA-ACAGGC 17727
Query 20327 CGTGCCCTCTGTCACCCAGAAAAAGTTCCTCTGCGACAGGGTCATGTGGCGCATCCCCTT 20386
| | | || |||| ||| || | || ||||| ||||| | || || ||
Sbjct 17728 AGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTT 17787
Query 20387 CTCCAGCAACTTCATGTCCATGGGCGCCCTCACCGACCTGGGTCAGAACATGCTCTATGC 20446
|||| |||||| ||||||||||| | || || || ||||| || || |||| |||||
Sbjct 17788 CTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGC 17847
Query 20447 CAACTCGGCCCACGCGCTCGACATGACCTTCGAGGTGGACCCCATGGATGAGCCCACCCT 20506
|| || || || || | |||||||| |||| || || | ||||| || || ||
Sbjct 17848 AAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTA 17907
Query 20507 CCTCTATCTTCTCTTCGAAGTTTTCGACGTGGTCAGAGTGCACCAGCCGCACCGCGGCGT 20566
||| | || || ||||| || ||| || ||||||||| ||||| || || || ||
Sbjct 17908 TCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGT 17967
Query 20567 CATCGAGGCCGTCTACCTGCGCACGCCCTTCTCCGCCGGCAACGCCACCACCTAA 20621
||| || | | || || | || ||||| || || || |||||| | || |||
Sbjct 17968 CATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022
Score = 105 bits (116), Expect = 1e-18
Identities = 134/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 17785 CGAAGATGGCCACCCCCTCGATGATGCCGCAGTGGGCGTACATGCACATCGCCGGGCAGG 17844
||||||||||||| ||||||||| | ||||| ||| | ||| | || ||||| || || |
Sbjct 15309 CGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAG 15368
Query 17845 ACGCCTCGGAGTACCTGAGCCCGGGTCTGGTG-CAGTTTGCCCGCGCCACCGACACGTAC 17903
| || || || || | | | | | | ||| || ||||| |||| ||||| ||||||
Sbjct 15369 ATGCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427
Query 17904 TTCAGCCTGGGCAACAAGTTTAGGAACCCCACGGTGGCCCCGACCCACGATGTGACCACG 17963
|| ||| || | || ||||| || || ||||| || ||||| |||||||| || |||
Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487
Query 17964 GA 17965
||
Sbjct 15488 GA 15489
Score = 80.6 bits (88), Expect = 6e-11
Identities = 124/176 (70%), Gaps = 1/176 (1%)
Strand=Plus/Plus
Query 6480 AGGGGTTGAGGGGCGGACCCCAGGGCATGGGATGAGTGAGGGCGGAGGCGTACATGCCGC 6539
|||| || || || || || ||||||||||||| || | ||| ||| ||||| |||
Sbjct 6037 AGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGG 6096
Query 6540 AGATGTCGTAGACATAGATGGGCTCCGAGAGGATGCCGATGTAGGTGGGATAACAGCGCC 6599
| || || || ||||| || || ||| | | || ||||| ||||| || || || |
Sbjct 6097 AAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTC 6156
Query 6600 CCCCGCGGATGCTGGCGCGCACGTAGTCATACAACTCGTGCGAGGGGGCCAAGAAG 6655
|||| | |||||| | | || | ||||| | ||||| || |||||| |||||
Sbjct 6157 CCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCC-AGAAG 6211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 112057181829970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |