Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_011202.1
Length=34794
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 486 4e-133
>seq4931
Length=27746
Score = 486 bits (538), Expect = 4e-133
Identities = 918/1329 (69%), Gaps = 30/1329 (2%)
Strand=Plus/Plus
Query 19777 TCTAGTAGACACCTATGTGAACATTGGTGCCAGGTGGTCTCTGGATGCCATGGACAATGT 19836
||| ||||| ||| | ||||| || |||||||||| | |||| ||||||| ||
Sbjct 16699 TCTGGTAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGT 16758
Query 19837 CAACCCATTCAACCACCACCGTAACGCTGGCTTGCGTTACCGATCCATGCTTCTGGGTAA 19896
|| ||||| || || ||| | || |||| ||| | ||| | || ||| | || ||
Sbjct 16759 TAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAA 16818
Query 19897 CGGACGTTATG-TGCCTTTCCACATACAAGTGCCTCAAAAATTCTTCGCTGTTAAAAACC 19955
|| || |||| | |||||| | || || || || ||||| || || || ||||||
Sbjct 16819 TGGTCGCTATGCTTCCTTTC-ATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTT 16877
Query 19956 TGCTGCTTCTCCCAGGCTCCTACACTTATGAGTGGAACTTTAGGAAGGATGTGAACATGG 20015
|||| || || || || || |||| ||| || ||| ||||| || ||||| ||||||
Sbjct 16878 TGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGA 16937
Query 20016 TTCTACAGAGTTCCCTCGGTAACGACCTGCGGGTAGATGGCGC--CAGCATCAGTTTCAC 20073
|| | |||||| | || || || || ||| ||| || || || ||| | || ||| ||
Sbjct 16938 TTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACA-TTTGAC 16996
Query 20074 GAGCATCAACCTCTATGCTACTTTTTTCCCCATGGCTCACAACACCGCTTCCACCCTTGA 20133
||||| | ||| | ||||||||| || || ||| |||| ||||| ||||| || || ||
Sbjct 16997 -AGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGA 17055
Query 20134 AGCCATGCTGCGGAATGACACCAATGATCAGTCATTCAACGACTACCTATCTGCAGC--T 20191
| | ||||| || ||||| || |||||||| ||| |||||| || || |||| |
Sbjct 17056 AACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTC--CAGCGTT 17113
Query 20192 AACATGCTCTACCCCATTCCTGCCAATGCAACCAATATTCCC-ATTTCCATTCCTTCTCG 20250
|||||||| || | |||||| | || ||| ||| | | || || || ||||| | |
Sbjct 17114 AACATGCTTTATGCTATTCCTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAG 17172
Query 20251 CAACTGGGCGGCTTTCAGAGGCTGGTCATTTACCAGACTGAAAACCAAAG-AAACTCCCT 20309
|| |||||||| || ||||| ||| ||||||| ||||| ||||| | || |||| ||
Sbjct 17173 GAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAA 17231
Query 20310 CTTTGGGGTCTGGATTTGACCCCTACTTTGTCTATTCTGGTTCTATTCCCTACCTGGATG 20369
| | || |||| ||||||||| |||||| || || || || || || || |||||
Sbjct 17232 CCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATG 17291
Query 20370 GTACCTTCTACCTGAACCACACTTTTAAGAAGGTTTCCATCATGTTTGACTCTTCAGTGA 20429
||||| || | |||||| | | ||||| |||| |||||| |||||||| |
Sbjct 17292 CGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAA 17351
Query 20430 GCTGGCCTGGAAATGACAGGTTACTATCTCCTAACGAATTTGAAATAAAGCGCACTGTGG 20489
| ||||||||||||||||| | || ||||| |||||| | ||||| | ||||
Sbjct 17352 GTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGG 17411
Query 20490 ATGGCGAAGGCTACAACGTAGCCCAATGCAACATGACCAAAGACTGGTTCTTGGTACAGA 20549
| | |||||||| ||| | || ||| || || || || |||| || | || |
Sbjct 17412 ACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAA 17471
Query 20550 TGCTCGCCAACTACAACATCGGCTATCAGGGCTTCTACATTCCAGAAGGATACAAAGATC 20609
||||||| ||||||| ||||| || || || || || | || || || ||||||
Sbjct 17472 TGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATA 17531
Query 20610 GCATGTATTCATTTTTCAGAAACTTCCAGCCCATGAGCAGGCAGGTGGTTGAT-GAGGTC 20668
| ||||||| ||||| ||||| || | |||||| | || || || || ||| |||
Sbjct 17532 GATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTA 17591
Query 20669 AATTACAAAGACTTCAAGGCCGTCGCCATACCCTACCAACACAACAACTCTGGCTTTGTG 20728
| ||| | |||| |||| || | || || || || || || || |||
Sbjct 17592 AGACGGAAAAATATCAA-CCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAA 17650
Query 20729 GGTTA-CATGGCTCCGACCAT----GCGCCAAGGTCAACCCTATCCCGCTAACTATCCCT 20783
| ||| |||| | ||| ||||| || || |||||| ||||| || |
Sbjct 17651 AACCATTATG-----GACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTT 17705
Query 20784 ATCCACTCATTGGAACAACTGCC--GTAAATAGTGTTACGCAGAAAAAGTTCTTGTGTGA 20841
|| ||||| || | ||| | | ||||| | |||| |||| ||| || || |||||
Sbjct 17706 TCCCGCTCATCGG-AGAACAGGCAGGTAAA-ACCATTACTCAGAGAAAATTTTTATGTGA 17763
Query 20842 CAGAACCATGTGGCGCATACCGTTCTCGAGCAACTTCATGTCTATGGGGGCCCTTACAGA 20901
|||||| ||||| | || |||||||| |||||| ||||| ||||| | || |||||
Sbjct 17764 CAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGA 17823
Query 20902 CTTGGGACAGAATATGCTCTATGCCAACTCAGCTCATGCTCTGGACATGACCTTTGAGGT 20961
||||||| ||| |||| ||||| || |||||||||||| | |||||||| | || ||
Sbjct 17824 TCTGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGT 17883
Query 20962 GGATCCCATGGATGAGCCCACCCTGCTTTATCTTCTCTTCGAAGTTTTCGACGTGGTCAG 21021
||| | ||||| || || || || | || || ||||| || ||| || |||
Sbjct 17884 AGATTCAATGGAGGAACCAACTTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAG 17943
Query 21022 AGTGCATCAGCCACACCGCGGCATCATCGAGGCAGTCTACCTGCGTACACCGTTCTCGGC 21081
|||||||||||| || || || |||| || | | || || | || || || |||||
Sbjct 17944 AGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGC 18003
Query 21082 CGGTAACGC 21090
||||||||
Sbjct 18004 AGGTAACGC 18012
Score = 145 bits (160), Expect = 2e-30
Identities = 205/288 (71%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 19204 GCCCAACAGACCCAACTACATTGGCTTCAGAGATAACTTTATTGGACTTATGTACTATAA 19263
||| ||||| || || || || || || || ||||||||||| || | |||| |||||
Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203
Query 19264 CAGTACTGGTAACATGGGGGTGCTGGCTGGTCAAGCGTCTCAGTTAAATGCAGTGGTTGA 19323
||||| | | || |||| || | || |||||| |||| ||| | ||||| || | ||
Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263
Query 19324 CTTGCAGGACAGAAACACAGAACTTTCTTACCAACTCTTGCTTGACTCTCTGGGCGACAG 19383
| | || |||||||| |||||| | || || || || || | || | | ||| ||
Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323
Query 19384 AACCAGATACTTTAGCATGTGGAATCAGGCTGTGGACAGTTATGATCCTGATGTACGTGT 19443
||| |||| | ||| |||||||||| || ||||| |||||||| || || || |
Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383
Query 19444 TATTGAAAATCATGGTGTGGAAGATGAACTTCCCAACTACTGTTTTCC 19491
|| || ||| ||| || ||||| |||||||| || || || |||||
Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431
Score = 138 bits (152), Expect = 3e-28
Identities = 446/678 (66%), Gaps = 32/678 (5%)
Strand=Plus/Plus
Query 6055 ATGCCTTTCATGAGGTTT-TCGTCCATTTGGTCAGAAAACACAAtttttttATTGTCAAG 6113
||| ||||||||| || | || ||||| || | ||||| ||||||||||| || |
Sbjct 5550 ATGTCTTTCATGATGTCACTTGTA-ATTTGATCCGGAAACAGTATTTTTTTATTATCTAA 5608
Query 6114 TTTGGTGGCAAATGATCCATACAGGGCGTTGGATAAAAGTTTGGCAATGGATCGCATGGT 6173
|||||||||| || || ||||| ||||| || || ||||| || ||| |||| ||
Sbjct 5609 CCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGT 5668
Query 6174 TTGGTTCTTTTCCTTGTCCGCGCGCTCTTTGGCGGCGATGTTGAGTTGG-ACATACTCGC 6232
||| | | || |||||| |||||| || || || || ||| | || || || |
Sbjct 5669 GCTGTTGTGGTTTTTTTCCGCGGCCTCTTTTGCCGCTATATT-AGTGGCTACGTATTCTC 5727
Query 6233 GTGCCAGGCACTTCCATTCGGGGAAGATAGTTGTTAAT---TCATCTGGCACGATTCTCA 6289
||||| ||| ||||| | | | ||| | || | | |||||||| || | || |
Sbjct 5728 TTGCCACGCAATTCCACT--GCTCAAATACT-GTAACTCGCTCATCTGGGACCAACCTAA 5784
Query 6290 CTTGCCACCCTCGATTATGCAAGGTAATTAAATCCACACTGGTGGCCACCTCGCCTCGAA 6349
| ||| |||||||||||||| ||||| ||| | ||| || ||||||| |
Sbjct 5785 TCTTCCATCCTCGATTATGCAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTA 5844
Query 6350 GGGGTTCATTGGTCCAACAGAGCCTACCTCCTTTCCTAGAACAGAAAGGGGGAAGTGGGT 6409
|||||| ||||| || || | || ||||| || ||||| || || || | |
Sbjct 5845 AATTTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACAT 5904
Query 6410 CTAGCATAAGTTCATCGGGAGG---GTCTGCATCCATGGTAAAGATTCCCGGAAGTAAAT 6466
||| || ||| |||| ||| ||| ||||| || || || |||| | |
Sbjct 5905 CTA-AGTA--TTCTTCGGCAGGGGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGG 5961
Query 6467 CCTTATCAAAATAGCTGATGGGAGTGGGGTCA-----TCTAAGGCCATTTGCCATTC--- 6518
| |||||||| || | | |||| | || || |||| || |
Sbjct 5962 CAGGGTCAAAATA------GGAAATTTTGTCACCGGTTGCAAAGCGTTTTG-AATACTGA 6014
Query 6519 TCGAGCTGCCAGTGCGCGCTCATATGGGTTAAGGGGACTGCCCCATGGCATGGGATGGGT 6578
| ||| |||| | ||| | || ||||| || ||| | ||||||||||| ||
Sbjct 6015 TAGAG-AGCCAAGTTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGT 6073
Query 6579 GAGTGCAGAGGCATACATGCCACAGATGTCATAGACGTAGATGGGATCCTCAAAGATGCC 6638
| ||| ||||||||| || | || ||||| || || || || |||||||| | ||
Sbjct 6074 TAATGCGCTGGCATACATTCCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACC 6133
Query 6639 TATGTAGGTTGGATAGCATCGCCCCCCTCTGATACTTGCTCGCACATAGTCATATAGTTC 6698
|||||| || || ||||| || ||||||||||| ||| ||| ||| | ||||| | ||
Sbjct 6134 TATGTAAGTGGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTC 6193
Query 6699 ATGTGATGGCGCTAGCAG 6716
||||| || || || ||
Sbjct 6194 GTGTGACGGGGCCAGAAG 6211
Score = 102 bits (112), Expect = 2e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 18251 AAGATGGCCACCCCATCGATGCTGCCCCAATGGGCATACATGCACATCGCCGGACAGGAT 18310
||||||||||| || |||||||| || |||||| | ||| | || ||||| ||||| |||
Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370
Query 18311 GCTTCGGAGTACCTGAGTCCGGGTCTGGTGCAGTTCGCCCGCGCCACAGACACCTACTTC 18370
||||| || || | ||| | || || || || |||| || || || |||||
Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430
Query 18371 AATCTGGGAAATAAGTTTAGAAATCCCACCGTAGCGCCGACCCACGATGTGACCACCGA 18429
|| | |||| ||||||||||| || || |||||||| |||||||| || || ||
Sbjct 15431 TCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489
Score = 87.8 bits (96), Expect = 4e-13
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 15074 TTCTACAACGAACAAGCTGTGTACTCCCAGCAGCTCCGCCAGTCCACCTCGCTTACGCAC 15133
|||| |||| || |||||||| || ||| | | | || || |||| || ||
Sbjct 13072 TTCTTTAACGCCCAGGCTGTGTATTCGCAGATGTTAGCGGATTCAACTTCGCAAACACAT 13131
Query 15134 GTCTTCAACCGCTTTCCTGAGAACCAGATTTTAATCCGTCCGCCGGCGCCCACCATTACC 15193
|||||||| | |||||||| || || || ||||||||||| || || ||||| ||| |
Sbjct 13132 GTCTTCAATAGATTTCCTGATAATCAAATCTTAATCCGTCCACCAGCTCCCACAATTTGC 13191
Query 15194 ACCGTCAGTGAAAACGTTCCTGCTCTCACAGATCACGGGAC 15234
|| |||| |||||||| || || | || |||||||| ||
Sbjct 13192 TCCATCAGCGAAAACGTGCCATCTTTGACGGATCACGGAAC 13232
Score = 84.2 bits (92), Expect = 5e-12
Identities = 147/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 21208 ACCCTATTTTTTGGGAACCTACGATAAGCGCTTCCCGGGGTTCATGGCCCCCGATAAGCT 21267
||| | ||||||||| ||||| ||||| ||||| |||||||| || || | | |
Sbjct 18075 ACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGTTTATCCGAAAGGACAGGTT 18134
Query 21268 CGCCTGTGCCATTGTAAATACGGCCGGACGTGAGACGGGGGGAGAGCACTGGTTGGCTTT 21327
||||||||||||||| || | || || ||| || | || ||| | || ||
Sbjct 18135 ATGCTGTGCCATTGTAAACACCGGGCTTCGCGAAGAGGGCGGTGTCCATTGGATTGCGTT 18194
Query 21328 CGGTTGGAACCCACGTTCTAACACCTGCTACCTTTTTGATCCTTTTGGATTCTCGGATGA 21387
| |||||| || | ||| || | ||| | |||||||| || |||||||||||| |
Sbjct 18195 TGCTTGGAATCCCTATATTAAAACATTTTACATGTTTGATCCATTCGGATTCTCGGATCA 18254
Query 21388 TCGTCTCAAACAGATTTACCAGTTTGAATATGAG 21421
| | ||| | ||||| | || |||||||||
Sbjct 18255 AGATTTGAAAAAAGTTTACAACTTCGAATATGAG 18288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 111133097779496
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