Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_011202.1 Length=34794 Score E Sequences producing significant alignments: (Bits) Value seq4931 486 4e-133 >seq4931 Length=27746 Score = 486 bits (538), Expect = 4e-133 Identities = 918/1329 (69%), Gaps = 30/1329 (2%) Strand=Plus/Plus Query 19777 TCTAGTAGACACCTATGTGAACATTGGTGCCAGGTGGTCTCTGGATGCCATGGACAATGT 19836 ||| ||||| ||| | ||||| || |||||||||| | |||| ||||||| || Sbjct 16699 TCTGGTAGAGGATTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGT 16758 Query 19837 CAACCCATTCAACCACCACCGTAACGCTGGCTTGCGTTACCGATCCATGCTTCTGGGTAA 19896 || ||||| || || ||| | || |||| ||| | ||| | || ||| | || || Sbjct 16759 TAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAA 16818 Query 19897 CGGACGTTATG-TGCCTTTCCACATACAAGTGCCTCAAAAATTCTTCGCTGTTAAAAACC 19955 || || |||| | |||||| | || || || || ||||| || || || |||||| Sbjct 16819 TGGTCGCTATGCTTCCTTTC-ATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTT 16877 Query 19956 TGCTGCTTCTCCCAGGCTCCTACACTTATGAGTGGAACTTTAGGAAGGATGTGAACATGG 20015 |||| || || || || || |||| ||| || ||| ||||| || ||||| |||||| Sbjct 16878 TGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGA 16937 Query 20016 TTCTACAGAGTTCCCTCGGTAACGACCTGCGGGTAGATGGCGC--CAGCATCAGTTTCAC 20073 || | |||||| | || || || || ||| ||| || || || ||| | || ||| || Sbjct 16938 TTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACA-TTTGAC 16996 Query 20074 GAGCATCAACCTCTATGCTACTTTTTTCCCCATGGCTCACAACACCGCTTCCACCCTTGA 20133 ||||| | ||| | ||||||||| || || ||| |||| ||||| ||||| || || || Sbjct 16997 -AGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGA 17055 Query 20134 AGCCATGCTGCGGAATGACACCAATGATCAGTCATTCAACGACTACCTATCTGCAGC--T 20191 | | ||||| || ||||| || |||||||| ||| |||||| || || |||| | Sbjct 17056 AACTATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTC--CAGCGTT 17113 Query 20192 AACATGCTCTACCCCATTCCTGCCAATGCAACCAATATTCCC-ATTTCCATTCCTTCTCG 20250 |||||||| || | |||||| | || ||| ||| | | || || || ||||| | | Sbjct 17114 AACATGCTTTATGCTATTCCTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAG 17172 Query 20251 CAACTGGGCGGCTTTCAGAGGCTGGTCATTTACCAGACTGAAAACCAAAG-AAACTCCCT 20309 || |||||||| || ||||| ||| ||||||| ||||| ||||| | || |||| || Sbjct 17173 GAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAA 17231 Query 20310 CTTTGGGGTCTGGATTTGACCCCTACTTTGTCTATTCTGGTTCTATTCCCTACCTGGATG 20369 | | || |||| ||||||||| |||||| || || || || || || || ||||| Sbjct 17232 CCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATG 17291 Query 20370 GTACCTTCTACCTGAACCACACTTTTAAGAAGGTTTCCATCATGTTTGACTCTTCAGTGA 20429 ||||| || | |||||| | | ||||| |||| |||||| |||||||| | Sbjct 17292 CGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAA 17351 Query 20430 GCTGGCCTGGAAATGACAGGTTACTATCTCCTAACGAATTTGAAATAAAGCGCACTGTGG 20489 | ||||||||||||||||| | || ||||| |||||| | ||||| | |||| Sbjct 17352 GTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGG 17411 Query 20490 ATGGCGAAGGCTACAACGTAGCCCAATGCAACATGACCAAAGACTGGTTCTTGGTACAGA 20549 | | |||||||| ||| | || ||| || || || || |||| || | || | Sbjct 17412 ACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAA 17471 Query 20550 TGCTCGCCAACTACAACATCGGCTATCAGGGCTTCTACATTCCAGAAGGATACAAAGATC 20609 ||||||| ||||||| ||||| || || || || || | || || || |||||| Sbjct 17472 TGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATA 17531 Query 20610 GCATGTATTCATTTTTCAGAAACTTCCAGCCCATGAGCAGGCAGGTGGTTGAT-GAGGTC 20668 | ||||||| ||||| ||||| || | |||||| | || || || || ||| ||| Sbjct 17532 GATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTA 17591 Query 20669 AATTACAAAGACTTCAAGGCCGTCGCCATACCCTACCAACACAACAACTCTGGCTTTGTG 20728 | ||| | |||| |||| || | || || || || || || || ||| Sbjct 17592 AGACGGAAAAATATCAA-CCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAA 17650 Query 20729 GGTTA-CATGGCTCCGACCAT----GCGCCAAGGTCAACCCTATCCCGCTAACTATCCCT 20783 | ||| |||| | ||| ||||| || || |||||| ||||| || | Sbjct 17651 AACCATTATG-----GACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTT 17705 Query 20784 ATCCACTCATTGGAACAACTGCC--GTAAATAGTGTTACGCAGAAAAAGTTCTTGTGTGA 20841 || ||||| || | ||| | | ||||| | |||| |||| ||| || || ||||| Sbjct 17706 TCCCGCTCATCGG-AGAACAGGCAGGTAAA-ACCATTACTCAGAGAAAATTTTTATGTGA 17763 Query 20842 CAGAACCATGTGGCGCATACCGTTCTCGAGCAACTTCATGTCTATGGGGGCCCTTACAGA 20901 |||||| ||||| | || |||||||| |||||| ||||| ||||| | || ||||| Sbjct 17764 CAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGA 17823 Query 20902 CTTGGGACAGAATATGCTCTATGCCAACTCAGCTCATGCTCTGGACATGACCTTTGAGGT 20961 ||||||| ||| |||| ||||| || |||||||||||| | |||||||| | || || Sbjct 17824 TCTGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGT 17883 Query 20962 GGATCCCATGGATGAGCCCACCCTGCTTTATCTTCTCTTCGAAGTTTTCGACGTGGTCAG 21021 ||| | ||||| || || || || | || || ||||| || ||| || ||| Sbjct 17884 AGATTCAATGGAGGAACCAACTTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAG 17943 Query 21022 AGTGCATCAGCCACACCGCGGCATCATCGAGGCAGTCTACCTGCGTACACCGTTCTCGGC 21081 |||||||||||| || || || |||| || | | || || | || || || ||||| Sbjct 17944 AGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGC 18003 Query 21082 CGGTAACGC 21090 |||||||| Sbjct 18004 AGGTAACGC 18012 Score = 145 bits (160), Expect = 2e-30 Identities = 205/288 (71%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 19204 GCCCAACAGACCCAACTACATTGGCTTCAGAGATAACTTTATTGGACTTATGTACTATAA 19263 ||| ||||| || || || || || || || ||||||||||| || | |||| ||||| Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203 Query 19264 CAGTACTGGTAACATGGGGGTGCTGGCTGGTCAAGCGTCTCAGTTAAATGCAGTGGTTGA 19323 ||||| | | || |||| || | || |||||| |||| ||| | ||||| || | || Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263 Query 19324 CTTGCAGGACAGAAACACAGAACTTTCTTACCAACTCTTGCTTGACTCTCTGGGCGACAG 19383 | | || |||||||| |||||| | || || || || || | || | | ||| || Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323 Query 19384 AACCAGATACTTTAGCATGTGGAATCAGGCTGTGGACAGTTATGATCCTGATGTACGTGT 19443 ||| |||| | ||| |||||||||| || ||||| |||||||| || || || | Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383 Query 19444 TATTGAAAATCATGGTGTGGAAGATGAACTTCCCAACTACTGTTTTCC 19491 || || ||| ||| || ||||| |||||||| || || || ||||| Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431 Score = 138 bits (152), Expect = 3e-28 Identities = 446/678 (66%), Gaps = 32/678 (5%) Strand=Plus/Plus Query 6055 ATGCCTTTCATGAGGTTT-TCGTCCATTTGGTCAGAAAACACAAtttttttATTGTCAAG 6113 ||| ||||||||| || | || ||||| || | ||||| ||||||||||| || | Sbjct 5550 ATGTCTTTCATGATGTCACTTGTA-ATTTGATCCGGAAACAGTATTTTTTTATTATCTAA 5608 Query 6114 TTTGGTGGCAAATGATCCATACAGGGCGTTGGATAAAAGTTTGGCAATGGATCGCATGGT 6173 |||||||||| || || ||||| ||||| || || ||||| || ||| |||| || Sbjct 5609 CCTGGTGGCAAAGGAACCGTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGT 5668 Query 6174 TTGGTTCTTTTCCTTGTCCGCGCGCTCTTTGGCGGCGATGTTGAGTTGG-ACATACTCGC 6232 ||| | | || |||||| |||||| || || || || ||| | || || || | Sbjct 5669 GCTGTTGTGGTTTTTTTCCGCGGCCTCTTTTGCCGCTATATT-AGTGGCTACGTATTCTC 5727 Query 6233 GTGCCAGGCACTTCCATTCGGGGAAGATAGTTGTTAAT---TCATCTGGCACGATTCTCA 6289 ||||| ||| ||||| | | | ||| | || | | |||||||| || | || | Sbjct 5728 TTGCCACGCAATTCCACT--GCTCAAATACT-GTAACTCGCTCATCTGGGACCAACCTAA 5784 Query 6290 CTTGCCACCCTCGATTATGCAAGGTAATTAAATCCACACTGGTGGCCACCTCGCCTCGAA 6349 | ||| |||||||||||||| ||||| ||| | ||| || ||||||| | Sbjct 5785 TCTTCCATCCTCGATTATGCAAAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTA 5844 Query 6350 GGGGTTCATTGGTCCAACAGAGCCTACCTCCTTTCCTAGAACAGAAAGGGGGAAGTGGGT 6409 |||||| ||||| || || | || ||||| || ||||| || || || | | Sbjct 5845 AATTTTCATTTGTCCAGCAAAGACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACAT 5904 Query 6410 CTAGCATAAGTTCATCGGGAGG---GTCTGCATCCATGGTAAAGATTCCCGGAAGTAAAT 6466 ||| || ||| |||| ||| ||| ||||| || || || |||| | | Sbjct 5905 CTA-AGTA--TTCTTCGGCAGGGGCGTCAGCATCAATTACAACAATGGCCGGTAACAGGG 5961 Query 6467 CCTTATCAAAATAGCTGATGGGAGTGGGGTCA-----TCTAAGGCCATTTGCCATTC--- 6518 | |||||||| || | | |||| | || || |||| || | Sbjct 5962 CAGGGTCAAAATA------GGAAATTTTGTCACCGGTTGCAAAGCGTTTTG-AATACTGA 6014 Query 6519 TCGAGCTGCCAGTGCGCGCTCATATGGGTTAAGGGGACTGCCCCATGGCATGGGATGGGT 6578 | ||| |||| | ||| | || ||||| || ||| | ||||||||||| || Sbjct 6015 TAGAG-AGCCAAGTTTCTGTCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGT 6073 Query 6579 GAGTGCAGAGGCATACATGCCACAGATGTCATAGACGTAGATGGGATCCTCAAAGATGCC 6638 | ||| ||||||||| || | || ||||| || || || || |||||||| | || Sbjct 6074 TAATGCGCTGGCATACATTCCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACC 6133 Query 6639 TATGTAGGTTGGATAGCATCGCCCCCCTCTGATACTTGCTCGCACATAGTCATATAGTTC 6698 |||||| || || ||||| || ||||||||||| ||| ||| ||| | ||||| | || Sbjct 6134 TATGTAAGTGGGGTAGCACCGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTC 6193 Query 6699 ATGTGATGGCGCTAGCAG 6716 ||||| || || || || Sbjct 6194 GTGTGACGGGGCCAGAAG 6211 Score = 102 bits (112), Expect = 2e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 18251 AAGATGGCCACCCCATCGATGCTGCCCCAATGGGCATACATGCACATCGCCGGACAGGAT 18310 ||||||||||| || |||||||| || |||||| | ||| | || ||||| ||||| ||| Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 18311 GCTTCGGAGTACCTGAGTCCGGGTCTGGTGCAGTTCGCCCGCGCCACAGACACCTACTTC 18370 ||||| || || | ||| | || || || || |||| || || || ||||| Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430 Query 18371 AATCTGGGAAATAAGTTTAGAAATCCCACCGTAGCGCCGACCCACGATGTGACCACCGA 18429 || | |||| ||||||||||| || || |||||||| |||||||| || || || Sbjct 15431 TCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Score = 87.8 bits (96), Expect = 4e-13 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 15074 TTCTACAACGAACAAGCTGTGTACTCCCAGCAGCTCCGCCAGTCCACCTCGCTTACGCAC 15133 |||| |||| || |||||||| || ||| | | | || || |||| || || Sbjct 13072 TTCTTTAACGCCCAGGCTGTGTATTCGCAGATGTTAGCGGATTCAACTTCGCAAACACAT 13131 Query 15134 GTCTTCAACCGCTTTCCTGAGAACCAGATTTTAATCCGTCCGCCGGCGCCCACCATTACC 15193 |||||||| | |||||||| || || || ||||||||||| || || ||||| ||| | Sbjct 13132 GTCTTCAATAGATTTCCTGATAATCAAATCTTAATCCGTCCACCAGCTCCCACAATTTGC 13191 Query 15194 ACCGTCAGTGAAAACGTTCCTGCTCTCACAGATCACGGGAC 15234 || |||| |||||||| || || | || |||||||| || Sbjct 13192 TCCATCAGCGAAAACGTGCCATCTTTGACGGATCACGGAAC 13232 Score = 84.2 bits (92), Expect = 5e-12 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 21208 ACCCTATTTTTTGGGAACCTACGATAAGCGCTTCCCGGGGTTCATGGCCCCCGATAAGCT 21267 ||| | ||||||||| ||||| ||||| ||||| |||||||| || || | | | Sbjct 18075 ACCTTGTTTTTTGGGTACCTATGATAAACGCTTTCCGGGGTTTATCCGAAAGGACAGGTT 18134 Query 21268 CGCCTGTGCCATTGTAAATACGGCCGGACGTGAGACGGGGGGAGAGCACTGGTTGGCTTT 21327 ||||||||||||||| || | || || ||| || | || ||| | || || Sbjct 18135 ATGCTGTGCCATTGTAAACACCGGGCTTCGCGAAGAGGGCGGTGTCCATTGGATTGCGTT 18194 Query 21328 CGGTTGGAACCCACGTTCTAACACCTGCTACCTTTTTGATCCTTTTGGATTCTCGGATGA 21387 | |||||| || | ||| || | ||| | |||||||| || |||||||||||| | Sbjct 18195 TGCTTGGAATCCCTATATTAAAACATTTTACATGTTTGATCCATTCGGATTCTCGGATCA 18254 Query 21388 TCGTCTCAAACAGATTTACCAGTTTGAATATGAG 21421 | | ||| | ||||| | || ||||||||| Sbjct 18255 AGATTTGAAAAAAGTTTACAACTTCGAATATGAG 18288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111133097779496