Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_011203.1
Length=35343
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 453 3e-123
>seq4931
Length=27746
Score = 453 bits (502), Expect = 3e-123
Identities = 903/1321 (68%), Gaps = 20/1321 (2%)
Strand=Plus/Plus
Query 19942 TACATCAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTCAAC 20001
|| |||||||| || |||||||||| | || ||||||| || |||||||| ||
Sbjct 16712 TATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAAT 16771
Query 20002 CACCACCGCAATGCTGGTCTGCGCTACAGGTCCATGCTTCTGGGAAATGGTCGTTATG-T 20060
|| ||| | ||| ||||| || | |||||||| ||| | ||||||||||| |||| |
Sbjct 16772 CATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCT 16831
Query 20061 GCCTTTCCACATACAAGTGCCTCAGAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACC 20120
||||| || || || || || || || || ||||| | || | | ||||| |||||
Sbjct 16832 TCCTTT-CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACC 16890
Query 20121 TGGCTCCTACACCTACGAGTGGAACTTCCGAAAGGATGTGAACATGGTCCTGCAAAGTTC 20180
|| || |||| ||||| ||| || |||| ||||| |||||| | |||| ||| |
Sbjct 16891 GGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTAC 16950
Query 20181 CCTTGGAAATGACCTCAGAACGGATGGTGCTACCATAAGTTTCACCAGCATCAATCTCTA 20240
||||| ||||| || || ||| || || | ||| || |||||| | || |
Sbjct 16951 TCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATT 17010
Query 20241 TGCCACCTTCTTCCCCATGGCTCACAACACAGCTTCCACCCTTGAAGCCATGCTGCGCAA 20300
||| || ||||| || ||| |||| ||||| ||||| || || ||| | ||||| |||||
Sbjct 17011 TGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAA 17070
Query 20301 CGATACCAATGATCAGTCATTTAACGACTACCTCTCTGCAGC--TAACATGCTTTACCCC 20358
|| || |||||||| || |||||| ||| | |||| |||||||||||| |
Sbjct 17071 TGAGGTTAACGATCAGTCCTTCGGCGACTA--TCTTTCCAGCGTTAACATGCTTTATGCT 17128
Query 20359 ATTCCTGCCAATGCAACCAACA-TTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTT 20417
|||||| | || ||| ||||| | || || || || ||| | | || ||||| |||||
Sbjct 17129 ATTCCTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTT 17187
Query 20418 CAGGGGCTGGTCCTTCACCAGACTCAAAACCA-AGGAGACTCCATCTCTTGGATCAGGGT 20476
|| || ||| | || || ||||| ||||| | |||| || ||| | |||| || | |
Sbjct 17188 TAGAGGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCAT 17246
Query 20477 TCGATCCCTACTTCGTATATTCTGGATCTATTCCCTACCTGGATGGCACCTTTTACCTTA 20536
| || || ||||| || || || || || || || ||||| |||||||| |||
Sbjct 17247 TTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTA-TTTA 17305
Query 20537 AC-CACACTTTCAAGAAGGTCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAAT 20595
| |||||| ||| ||||| |||| |||||| || ||||| || |||||||| |||
Sbjct 17306 TCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAAT 17365
Query 20596 GACAGGCTGTTGAGTCCAAATGAGTTTGAAATCAAGCGCACTGTGGACGGGGAAGGATAC 20655
||||| || || | || ||||| ||| | || || | ||||||| |||||| ||
Sbjct 17366 GACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTAT 17425
Query 20656 AACGTGGCACAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCAATTAC 20715
||| | || ||| || || || || |||| || |||| ||||| || | |||
Sbjct 17426 AACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTAC 17485
Query 20716 AACATTGGCTACCAGGGCTTTTACATCCCTGAGGGATACAAGGATCGCATGTACTCCTTT 20775
|| || || ||||| || ||| || | || | || || ||| | |||| ||||||
Sbjct 17486 AATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTT 17545
Query 20776 TTCAGAAACTTCCAGCCTATGAGCAGGCAGGTGGTTGATGAGGTTAATTACACTG---AC 20832
|| ||||| || | || ||| | || || || || ||| | || | || | |
Sbjct 17546 TTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTA---AGACGGAAAAA 17602
Query 20833 TACAAAGCCGTCAC-CTTACCATACCAACACAACAACTCTGGCTTTGTAGGGTACCTTGC 20891
|| || |||| | |||| ||| || || || || || || ||| | | ||
Sbjct 17603 TATCAACCCGTTGCTCTTA-AATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGG 17661
Query 20892 ACCTACTATGAGACAAGGGGAACCTTACCCAGCCAATTATCCATACCCGCTCATCGGAAC 20951
||| | | ||||||| | ||||| || || | || | |||||||||||||
Sbjct 17662 ACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGA 17721
Query 20952 TACTGCCGTTAAGAGTGTCACCCAGAAAAAGTTCCTGTGCGACAGGACCATGTGGCGCAT 21011
|| | ||| | | || |||| ||| || | || ||||| || ||||| | ||
Sbjct 17722 ACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGAT 17781
Query 21012 TCCCTTCTCCAGCAACTTCATGTCCATGGGGGCCCTTACCGACCTGGGACAGAACATGCT 21071
||| |||||| |||||| ||||||||||| | || || || |||||||| || ||||
Sbjct 17782 TCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCT 17841
Query 21072 CTATGCCAACTCAGCCCATGCGCTGGACATGACTTTTGAGGTGGATCCCATGGATGAGCC 21131
||||| || ||||| ||||| | |||||||| | || || ||| | ||||| || ||
Sbjct 17842 ATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACC 17901
Query 21132 CACCCTGCTTTATCTTCTTTTCGAAGTCTTCGACGTGGTCAGAGTGCACCAGCCACACCG 21191
|| || | || || ||||| || ||| || ||||||||| ||||| || ||
Sbjct 17902 AACTTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACG 17961
Query 21192 CGGCGTCATCGAGGCCGTCTACCTGCGCACACCGTTCTCGGCCGGCAACGCCACCACATA 21251
|| ||||| || | | || || | || || || ||||| || |||||| | |||||
Sbjct 17962 AGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATA 18021
Query 21252 A 21252
|
Sbjct 18022 A 18022
Score = 168 bits (186), Expect = 2e-37
Identities = 210/288 (73%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 19356 GCCTAACAGACCCAATTACATTGGCTTCAGGGATAACTTCGTAGGCCTAATGTACTACAA 19415
||| ||||| || ||||| || || || ||||||||||| | || |||||| || ||
Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203
Query 19416 CAGTACTGGAAATATGGGAGTTTTGGCTGGCCAAGCATCACAACTGAATGCAGTGGTTGA 19475
||||| | | ||| |||| || || || || ||| | ||||| || ||||| || | ||
Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263
Query 19476 CTTGCAGGACAGAAATACTGAACTGTCATATCAGCTTTTGCTTGATTCTCTGGGAGACAG 19535
| | || ||||||||||| ||| |||||||||||||| || | ||| | | || ||
Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323
Query 19536 AACCAGATACTTCAGCATGTGGAATCAGGCTGTGGACAGTTACGATCCCGATGTTCGCAT 19595
||| |||| | |||| |||||||||| || ||||| || ||||| || || || ||
Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383
Query 19596 TATTGAAAATCATGGCATCGAGGATGAACTGCCTAATTACTGTTTTCC 19643
|| || ||| ||| | || || ||||| || ||||| || |||||
Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431
Score = 127 bits (140), Expect = 5e-25
Identities = 216/311 (69%), Gaps = 4/311 (1%)
Strand=Plus/Plus
Query 4171 ATATCTTTTAGGAGCAGACTAATTGCAACGGGGAGGCCCTTAGTGTAGGTGTTTACAAAT 4230
|||||||||| | || | ||||| | ||| ||||| ||||| || || || | ||||
Sbjct 3679 ATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAAT 3738
Query 4231 CTGTTGAGCTGGGACGGGTGCATCCGGGGTGAAATTATATGCATTTTGGACTGGATCTTG 4290
||||| ||||| | || ||||| ||| | |||||| ||| | || || ||
Sbjct 3739 CTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTT 3798
Query 4291 AGGTTGGCAATGTTGCCGCCTAGATCCCGTCTCGGGTTCATATTGTGCAGGACCACCAAG 4350
|| ||| || || || | || ||| || |||||||||||| || | ||||| ||
Sbjct 3799 AGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAAC 3858
Query 4351 ACAGTGTATCCGGTGCACTTGGGAAATTTATCATGCAGCTTAGAGGGAAAAGCATGAAAA 4410
| | ||| ||| ||||| |||| |||| ||| || || || ||||| || ||||||
Sbjct 3859 AGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAA 3918
Query 4411 AATTTGG--AGACGCCTTTGTGACCCCCCAGATTCTCCATGCACTCATCCATAATGATAG 4468
||||| | | | | | ||| || || | ||| ||||| |||||||| || || || |
Sbjct 3919 AATTTTGCAATAGGGC--TGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGG 3976
Query 4469 CGATGGGGCCG 4479
| ||||| |||
Sbjct 3977 CTATGGGTCCG 3987
Score = 118 bits (130), Expect = 2e-22
Identities = 134/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 6522 TCATAGGGGTTAAGAGGGGTGCCCCAGGGCATGGGGTGGGTGAGCGCGGAGGCATACATG 6581
||| |||| ||||| || | ||| |||||||||| || || | ||| |||||||||
Sbjct 6033 TCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATT 6092
Query 6582 CCACAGATATCGTAGACATAGAGGGGCTCTTCGAGGATGCCGATGTAAGTGGGATAACAT 6641
|| | ||||| || ||||| | || || || | | || ||||||||||| || ||
Sbjct 6093 CCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCAC 6152
Query 6642 CGCCCCCCTCTGATGCTTGCTCGCACATAGTCATAGAGTTCATGTGAGGGGGCAAGAAGA 6701
|| ||||||||||||||| ||| ||| | ||||| | || ||||| ||||| ||||||
Sbjct 6153 CGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAGA 6212
Score = 87.8 bits (96), Expect = 4e-13
Identities = 129/181 (71%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 18415 AAGATGGCCACCCCATCGATGATGCCCCAATGGGCATACATGCACATCGCCGGACAGGAT 18474
||||||||||| || |||||| | || |||||| | ||| | || ||||| ||||| |||
Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370
Query 18475 GCTTCGGAGTACCTCAGTCCGGGTCTGGTGCAGTTCGCCCGTGCAACAGACACCTAC--T 18532
||||| || || | ||| | || || || || | ||||| || || ||| |
Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430
Query 18533 TCAGTATGGGGAACAAATTTAGAAACCCCACAGTGGCGCCCACCCACGATGTGACCACCG 18592
|| || | | | ||||||||||| || || || ||||| || |||||||| || || |
Sbjct 15431 TCCCTAAGCG--ATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGG 15488
Query 18593 A 18593
|
Sbjct 15489 A 15489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 112888537723130
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