Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_011203.1 Length=35343 Score E Sequences producing significant alignments: (Bits) Value seq4931 453 3e-123 >seq4931 Length=27746 Score = 453 bits (502), Expect = 3e-123 Identities = 903/1321 (68%), Gaps = 20/1321 (2%) Strand=Plus/Plus Query 19942 TACATCAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTCAAC 20001 || |||||||| || |||||||||| | || ||||||| || |||||||| || Sbjct 16712 TATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAAT 16771 Query 20002 CACCACCGCAATGCTGGTCTGCGCTACAGGTCCATGCTTCTGGGAAATGGTCGTTATG-T 20060 || ||| | ||| ||||| || | |||||||| ||| | ||||||||||| |||| | Sbjct 16772 CATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCT 16831 Query 20061 GCCTTTCCACATACAAGTGCCTCAGAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACC 20120 ||||| || || || || || || || || ||||| | || | | ||||| ||||| Sbjct 16832 TCCTTT-CATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACC 16890 Query 20121 TGGCTCCTACACCTACGAGTGGAACTTCCGAAAGGATGTGAACATGGTCCTGCAAAGTTC 20180 || || |||| ||||| ||| || |||| ||||| |||||| | |||| ||| | Sbjct 16891 GGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTAC 16950 Query 20181 CCTTGGAAATGACCTCAGAACGGATGGTGCTACCATAAGTTTCACCAGCATCAATCTCTA 20240 ||||| ||||| || || ||| || || | ||| || |||||| | || | Sbjct 16951 TCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATT 17010 Query 20241 TGCCACCTTCTTCCCCATGGCTCACAACACAGCTTCCACCCTTGAAGCCATGCTGCGCAA 20300 ||| || ||||| || ||| |||| ||||| ||||| || || ||| | ||||| ||||| Sbjct 17011 TGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAA 17070 Query 20301 CGATACCAATGATCAGTCATTTAACGACTACCTCTCTGCAGC--TAACATGCTTTACCCC 20358 || || |||||||| || |||||| ||| | |||| |||||||||||| | Sbjct 17071 TGAGGTTAACGATCAGTCCTTCGGCGACTA--TCTTTCCAGCGTTAACATGCTTTATGCT 17128 Query 20359 ATTCCTGCCAATGCAACCAACA-TTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTT 20417 |||||| | || ||| ||||| | || || || || ||| | | || ||||| ||||| Sbjct 17129 ATTCCTCCGCAT-CAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTT 17187 Query 20418 CAGGGGCTGGTCCTTCACCAGACTCAAAACCA-AGGAGACTCCATCTCTTGGATCAGGGT 20476 || || ||| | || || ||||| ||||| | |||| || ||| | |||| || | | Sbjct 17188 TAGAGGTTGGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCAT 17246 Query 20477 TCGATCCCTACTTCGTATATTCTGGATCTATTCCCTACCTGGATGGCACCTTTTACCTTA 20536 | || || ||||| || || || || || || || ||||| |||||||| ||| Sbjct 17247 TTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTA-TTTA 17305 Query 20537 AC-CACACTTTCAAGAAGGTCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAAT 20595 | |||||| ||| ||||| |||| |||||| || ||||| || |||||||| ||| Sbjct 17306 TCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAAT 17365 Query 20596 GACAGGCTGTTGAGTCCAAATGAGTTTGAAATCAAGCGCACTGTGGACGGGGAAGGATAC 20655 ||||| || || | || ||||| ||| | || || | ||||||| |||||| || Sbjct 17366 GACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTAT 17425 Query 20656 AACGTGGCACAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCAATTAC 20715 ||| | || ||| || || || || |||| || |||| ||||| || | ||| Sbjct 17426 AACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTAC 17485 Query 20716 AACATTGGCTACCAGGGCTTTTACATCCCTGAGGGATACAAGGATCGCATGTACTCCTTT 20775 || || || ||||| || ||| || | || | || || ||| | |||| |||||| Sbjct 17486 AATATCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTT 17545 Query 20776 TTCAGAAACTTCCAGCCTATGAGCAGGCAGGTGGTTGATGAGGTTAATTACACTG---AC 20832 || ||||| || | || ||| | || || || || ||| | || | || | | Sbjct 17546 TTAAGAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTA---AGACGGAAAAA 17602 Query 20833 TACAAAGCCGTCAC-CTTACCATACCAACACAACAACTCTGGCTTTGTAGGGTACCTTGC 20891 || || |||| | |||| ||| || || || || || || ||| | | || Sbjct 17603 TATCAACCCGTTGCTCTTA-AATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGG 17661 Query 20892 ACCTACTATGAGACAAGGGGAACCTTACCCAGCCAATTATCCATACCCGCTCATCGGAAC 20951 ||| | | ||||||| | ||||| || || | || | ||||||||||||| Sbjct 17662 ACCCTTTGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGA 17721 Query 20952 TACTGCCGTTAAGAGTGTCACCCAGAAAAAGTTCCTGTGCGACAGGACCATGTGGCGCAT 21011 || | ||| | | || |||| ||| || | || ||||| || ||||| | || Sbjct 17722 ACAGGCAGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGAT 17781 Query 21012 TCCCTTCTCCAGCAACTTCATGTCCATGGGGGCCCTTACCGACCTGGGACAGAACATGCT 21071 ||| |||||| |||||| ||||||||||| | || || || |||||||| || |||| Sbjct 17782 TCCGTTCTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCT 17841 Query 21072 CTATGCCAACTCAGCCCATGCGCTGGACATGACTTTTGAGGTGGATCCCATGGATGAGCC 21131 ||||| || ||||| ||||| | |||||||| | || || ||| | ||||| || || Sbjct 17842 ATATGCAAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACC 17901 Query 21132 CACCCTGCTTTATCTTCTTTTCGAAGTCTTCGACGTGGTCAGAGTGCACCAGCCACACCG 21191 || || | || || ||||| || ||| || ||||||||| ||||| || || Sbjct 17902 AACTTATCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACG 17961 Query 21192 CGGCGTCATCGAGGCCGTCTACCTGCGCACACCGTTCTCGGCCGGCAACGCCACCACATA 21251 || ||||| || | | || || | || || || ||||| || |||||| | ||||| Sbjct 17962 AGGTGTCATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATA 18021 Query 21252 A 21252 | Sbjct 18022 A 18022 Score = 168 bits (186), Expect = 2e-37 Identities = 210/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 19356 GCCTAACAGACCCAATTACATTGGCTTCAGGGATAACTTCGTAGGCCTAATGTACTACAA 19415 ||| ||||| || ||||| || || || ||||||||||| | || |||||| || || Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203 Query 19416 CAGTACTGGAAATATGGGAGTTTTGGCTGGCCAAGCATCACAACTGAATGCAGTGGTTGA 19475 ||||| | | ||| |||| || || || || ||| | ||||| || ||||| || | || Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263 Query 19476 CTTGCAGGACAGAAATACTGAACTGTCATATCAGCTTTTGCTTGATTCTCTGGGAGACAG 19535 | | || ||||||||||| ||| |||||||||||||| || | ||| | | || || Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323 Query 19536 AACCAGATACTTCAGCATGTGGAATCAGGCTGTGGACAGTTACGATCCCGATGTTCGCAT 19595 ||| |||| | |||| |||||||||| || ||||| || ||||| || || || || Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383 Query 19596 TATTGAAAATCATGGCATCGAGGATGAACTGCCTAATTACTGTTTTCC 19643 || || ||| ||| | || || ||||| || ||||| || ||||| Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCC 16431 Score = 127 bits (140), Expect = 5e-25 Identities = 216/311 (69%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 4171 ATATCTTTTAGGAGCAGACTAATTGCAACGGGGAGGCCCTTAGTGTAGGTGTTTACAAAT 4230 |||||||||| | || | ||||| | ||| ||||| ||||| || || || | |||| Sbjct 3679 ATATCTTTTAATAATAGGGTGATTGCTAAGGGTAGGCCTTTAGTATAAGTATTAATAAAT 3738 Query 4231 CTGTTGAGCTGGGACGGGTGCATCCGGGGTGAAATTATATGCATTTTGGACTGGATCTTG 4290 ||||| ||||| | || ||||| ||| | |||||| ||| | || || || Sbjct 3739 CTGTTTAGCTGAGCGGGTTGCATTTTGGGGCTCAGTATATGATATTTAGCTTGAATTTTT 3798 Query 4291 AGGTTGGCAATGTTGCCGCCTAGATCCCGTCTCGGGTTCATATTGTGCAGGACCACCAAG 4350 || ||| || || || | || ||| || |||||||||||| || | ||||| || Sbjct 3799 AGTGTGGATATATTTCCACTTAAATCTTTTCGCGGGTTCATATTATGTAATACCACAAAC 3858 Query 4351 ACAGTGTATCCGGTGCACTTGGGAAATTTATCATGCAGCTTAGAGGGAAAAGCATGAAAA 4410 | | ||| ||| ||||| |||| |||| ||| || || || ||||| || |||||| Sbjct 3859 AGATAGTACCCGCTGCACGAGGGATATTTTTCAAATAGTTTTGAAGGAAACGCGTGAAAA 3918 Query 4411 AATTTGG--AGACGCCTTTGTGACCCCCCAGATTCTCCATGCACTCATCCATAATGATAG 4468 ||||| | | | | | ||| || || | ||| ||||| |||||||| || || || | Sbjct 3919 AATTTTGCAATAGGGC--TGTTCCCTCCTAAATTTTCCATACACTCATCAATGATAATGG 3976 Query 4469 CGATGGGGCCG 4479 | ||||| ||| Sbjct 3977 CTATGGGTCCG 3987 Score = 118 bits (130), Expect = 2e-22 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 6522 TCATAGGGGTTAAGAGGGGTGCCCCAGGGCATGGGGTGGGTGAGCGCGGAGGCATACATG 6581 ||| |||| ||||| || | ||| |||||||||| || || | ||| ||||||||| Sbjct 6033 TCAAAGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATT 6092 Query 6582 CCACAGATATCGTAGACATAGAGGGGCTCTTCGAGGATGCCGATGTAAGTGGGATAACAT 6641 || | ||||| || ||||| | || || || | | || ||||||||||| || || Sbjct 6093 CCGGAAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCAC 6152 Query 6642 CGCCCCCCTCTGATGCTTGCTCGCACATAGTCATAGAGTTCATGTGAGGGGGCAAGAAGA 6701 || ||||||||||||||| ||| ||| | ||||| | || ||||| ||||| |||||| Sbjct 6153 CGTCCCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAGA 6212 Score = 87.8 bits (96), Expect = 4e-13 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 18415 AAGATGGCCACCCCATCGATGATGCCCCAATGGGCATACATGCACATCGCCGGACAGGAT 18474 ||||||||||| || |||||| | || |||||| | ||| | || ||||| ||||| ||| Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 18475 GCTTCGGAGTACCTCAGTCCGGGTCTGGTGCAGTTCGCCCGTGCAACAGACACCTAC--T 18532 ||||| || || | ||| | || || || || | ||||| || || ||| | Sbjct 15371 GCTTCAGAATATTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTTT 15430 Query 18533 TCAGTATGGGGAACAAATTTAGAAACCCCACAGTGGCGCCCACCCACGATGTGACCACCG 18592 || || | | | ||||||||||| || || || ||||| || |||||||| || || | Sbjct 15431 TCCCTAAGCG--ATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGG 15488 Query 18593 A 18593 | Sbjct 15489 A 15489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112888537723130