Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq66 113 4e-20
seq147 89.7 5e-13
>seq66
Length=5789316
Score = 113 bits (124), Expect = 4e-20
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| || |
Sbjct 2649666 CCACCTCGGAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649607
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || ||||| || || || ||||||| | ||||||||| || |||
Sbjct 2649606 AGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGT 2649547
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | ||| ||
Sbjct 2649546 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 2649487
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATT 127121
|| | ||| | || ||||| ||||| || || ||||| |||||||| | ||||
Sbjct 2649486 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTGTCTATT 2649432
>seq147
Length=2532799
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| |||||||| || || ||||| || | ||||| ||| || ||||| || ||
Sbjct 2384145 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2384086
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| | |||||| |||||||| |||||||| || ||| ||| || |||
Sbjct 2384085 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 2384026
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | ||| || | ||| || || | ||| | || ||||||||||| ||
Sbjct 2384025 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTCAGGGTC 2383966
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 2383965 TTCACGAAGATCTGCAT 2383949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475113308454320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |