Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq66 113 4e-20 seq147 89.7 5e-13 >seq66 Length=5789316 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| || | Sbjct 2649666 CCACCTCGGAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649607 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || || ||||||| | ||||||||| || ||| Sbjct 2649606 AGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGT 2649547 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 2649546 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 2649487 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATT 127121 || | ||| | || ||||| ||||| || || ||||| |||||||| | |||| Sbjct 2649486 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTGTCTATT 2649432 >seq147 Length=2532799 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || | ||||| ||| || ||||| || || Sbjct 2384145 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 2384086 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| | |||||| |||||||| |||||||| || ||| ||| || ||| Sbjct 2384085 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 2384026 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | ||| || || | ||| | || ||||||||||| || Sbjct 2384025 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTCTTGCCGGTCAGGGTC 2383966 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 2383965 TTCACGAAGATCTGCAT 2383949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475113308454320