Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq57 172 8e-38 >seq57 Length=13896254 Score = 172 bits (190), Expect = 8e-38 Identities = 211/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||| || || ||| ||||||||||| |||| || || || | ||| Sbjct 6724352 AAGGGACAGCCCTTGACGTTATTACAGATGAGGGACTGGATGGAGGCAGTGTTGATGATT 6724293 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || || || ||||| |||||||||||| || |||||||| Sbjct 6724292 TTAAAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTACTGAGGTGAGCAGATAGGA 6724233 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| | || || || Sbjct 6724232 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTTTCCCCAAAT 6724173 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| || ||||| || | | | ||| ||| | || | ||| || | | Sbjct 6724172 ATAGCATCTGGACGAGGCTTTTCTACCAGCAGGGCAGGGTACAACTCCATAGCGTCAATG 6724113 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 || ||||| ||||||||||| |||||||| || |||||||| ||| || Sbjct 6724112 TCACCATACAGGGCTTCCAATTCGGCAGCCATTTCCTTCTCTCCTGCA 6724065 Score = 147 bits (162), Expect = 3e-30 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 ||||| | || || || ||||| |||| ||| |||| || || || || ||||| || Sbjct 6722699 ATTAGCCTGGTAGTCTGGAACAAGCGCTCATCATCCCACTCTGGATGCTCTTGTTTAAGC 6722640 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 ||||| || || | ||||||||||| ||||| |||||||| |||||||| | ||| || Sbjct 6722639 ACATCACACACTCGGTTGTGTTCTCGAAGCCAGATGGTGGCATACATCATCAGACCAGGT 6722580 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | |||||| | || | |||||| ||||| |||| | || || | || | Sbjct 6722579 ACCAGACCAAAGATCTCCTGCCCCACAGCAAACTGCAGGTGCTCAGGGGTATGAGGTGGG 6722520 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||||| || |||||||| |||||||||||||| || || || || ||| Sbjct 6722519 TAGATCATCTCCACCTGAGTATCTTTGACTGTGGGGGGATACATCTCTCCATCTATTACC 6722460 Query 9967 T 9967 | Sbjct 6722459 T 6722459 Score = 122 bits (134), Expect = 1e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | || ||||| |||||||| ||| ||| | || Sbjct 6721497 TCTTACCCCATGGCCCAGTCCTTTGGTAAAAGCAGGTCCTCGTTTTTGATCTGTCTTGAA 6721438 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || |||||||| | || || |||||||||| ||| ||||| || ||||| Sbjct 6721437 AAACTGATGGGTGAAGTGTTGGGCAAAGAATGCGAACATCATGTTAGTGCCTTGAGGATC 6721378 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 |||||||| | || | | || |||||| |||| || || | ||||||| || || Sbjct 6721377 AGGGATAAACTTTCTTCTCAGAAGAACTTTCTCCAGAAGCTCTTTTGAATCAGGGAG 6721321 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 ||||||||| || | ||||| ||||||||| || || ||||| || | ||| ||||| Sbjct 6720994 ACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACAGGAGGAAGGGCTCTGGTATA 6720935 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 ||||| || || || || ||||||||||| |||||||||||||| | ||||| || Sbjct 6720934 GTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAATCCACATTGTAAGTTGG 6720875 Query 10509 GGGACTGTCAATCATCTCGGACCTGGCT 10536 || |||||||||| | || |||||| Sbjct 6720874 TGGGCTGTCAATCAAATGTGATCTGGCT 6720847 Score = 109 bits (120), Expect = 8e-19 Identities = 189/273 (69%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 9419 TACCACCACTAATCCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTC 9478 ||||| || | ||| || ||| | || | ||||| |||||||| || || | | | Sbjct 6723299 TACCAGTGCTTACCCGGCCAGCATTTTGCTTGGTGAAGGATTCAACAAACTGAGTAAGGC 6723240 Query 9479 CGTGCTTGATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGC 9538 | |||| || || |||||||||||||| | || |||| || |||| | ||| Sbjct 6723239 CATGCTCTATTAGTATGGAATTGTTGTAGAGAAACTGTTTAAAATTGTACTCCTGGTCAT 6723180 Query 9539 CTATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCG 9598 | || |||| ||||||| ||||| ||||||| |||||||||| || || || || | Sbjct 6723179 CAATTTGAAAGGTGTCAGGCAGCAGAGGATGCCAGTGGTAGAGGGTGTTAAATTCAGCAG 6723120 Query 9599 CTATTCGGTTCTGGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAG 9656 | || ||||| ||||| || || | ||| ||| || | || |||||||| | | Sbjct 6723119 CGATACGGTTTTGGTATTGGAATTGTTGGT--TGAAAAGCAGTTCTGGGTCAAACTTCAA 6723062 Query 9657 CTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689 | |||||| || || || || ||||| ||||| Sbjct 6723061 TTTGAAGTGATAGCCACTCAGGTGCTGTACATA 6723029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723138225006200