Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_012959.1
Length=34920
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 441 2e-119
>seq4931
Length=27746
Score = 441 bits (488), Expect = 2e-119
Identities = 1250/1915 (65%), Gaps = 42/1915 (2%)
Strand=Plus/Plus
Query 18631 GCCAAACAGGCCAAACTACATTGGCTTCAGGGACAACTTTGTAGGCCTTATGTACTACAA 18690
||||||||||||||| || || || || ||||| |||||| | || | |||| || ||
Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203
Query 18691 CAGCACTGGCAACATGGGTGTGCTAGCTGGTCAGGCCTCTCAGTTGAATGCTGTGGTTGA 18750
||| | | |||| ||||||| |||| ||||| | || ||| | |||||||| | ||
Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263
Query 18751 CTTACAAGACAGAAACACGGAGCTGTCTTACCAGCTTTTGCTAGATTCTCTGGGTGACAG 18810
| | ||||||||||| || || |||| || |||||| || ||||| | | || ||
Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323
Query 18811 AACCAGATACTTTAGTATGTGGAACTCTGCGGTGGACAGTTACGATCCAGATGTCAGGAT 18870
||| |||| | || ||||||| || ||||| || |||||||| ||| | ||
Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383
Query 18871 TATTGAGAATCACGGTGTGGAAGATGAACTTCCAAACTATTGCTTTCCATTGGACGGAGC 18930
|| || ||| || || ||||| ||||||||||| ||||||||||| || |||
Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATG 16443
Query 18931 TGGTACTAATGCTACATATCAGGGTGTTAAAGTTAAAAATGGACAGG--ATGGTGACAAC 18988
| | ||| || | ||| | |||||| | |||||||||| | || |||
Sbjct 16444 TTCTCCTATTGAT---TATACTGCTGTTAA---TCAAAATGGACAAGCAAT-----CAAT 16492
Query 18989 AACGCAGAATGGGAGAAAGACAATGCAGTTGCGGATCGAAACCAAATTTGCAAGGGTAAC 19048
||| ||| || | |||| | | || | |||| || ||
Sbjct 16493 AAC----AAT------AACCCTGCGCAGGTTCTTATAG-----------GCAAAGGAAAT 16531
Query 19049 ATCGTCGCCATGGAAATTAACCTTCAGGCCAACCTGTGGAAAAGTTTTCTGTACTCGAAC 19108
| | ||||||||| ||| | ||||||||||||||| | ||||||||| || ||
Sbjct 16532 GTTGAATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAAT 16591
Query 19109 GTGGCCTTGTACCTGCCCGACTCCTTTAAGTACACGCCGGCCAACGTCACACTGCC-CAC 19167
| || |||| |||||||| |||||| ||| || || || || | |||| ||
Sbjct 16592 ATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAG 16651
Query 19168 CAACNNNNNNNNNNNNGAGTACATGAACGGGCGCGTGGTGGCCCCCTCGCTGGTGGACGC 19227
| | | |||||||| ||| | ||| ||||| || |
Sbjct 16652 GATCAGCGGCTATAT-GCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGA 16710
Query 19228 TTACGTTAACATTGGCGCCCGCTGGTCACTGGACCCCATGGACAACGTTAACCCCTTTAA 19287
||| | ||||| || || | |||||| | || ||||||| ||||| || |||||
Sbjct 16711 TTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAA 16770
Query 19288 CCACCACCGCAACGCGGGCCTGCGCTATCGCTCCATGCTGCTGGGCAACGGGCGCTACGT 19347
|| ||| | || | || || | || | || ||| | || || || ||||| |
Sbjct 16771 TCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGC 16830
Query 19348 GCCCTTTCACATCCAAGTGCCCCAAAAGTTCTTTGCCATTAAAAACCTGCTCCTGCTCCC 19407
||||||| || || || || |||||||| ||||| |||||| |||| ||||| ||
Sbjct 16831 TTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACC 16890
Query 19408 GGGCTCCTACACCTACGAGTGGAACTTCCGCAAGGACGTCAACATGATCCTGCAGAGTTC 19467
||| || |||| ||||| ||| || | || || || |||||||| |||||||| |
Sbjct 16891 GGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTAC 16950
Query 19468 CCTGGGCAACGACCTGCGCGTCGACGGCGCCTCCGTCCGCTTTGACAGTGTGAACCTCTA 19527
|| ||||| || ||| | | ||||| || || || |||||||| | | ||| |
Sbjct 16951 TCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATT 17010
Query 19528 CGCCACCTTCTTCCCCATGGCGCACAACACCGCCTCCACCCTGGAAGCCATGCTGCGCAA 19587
|| || ||||| || ||| | || ||||| || || || |||||| | ||||| |||||
Sbjct 17011 TGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAA 17070
Query 19588 CGACACCAACGACCAGTCCTTCAACGACTACCTCTCGGCCGCCAACATGCTTTACCCCAT 19647
|| ||||| ||||||||| |||||| || || || ||||||||||| | ||
Sbjct 17071 TGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTAT 17130
Query 19648 CCCGGCCAAGGCCACCAAC-GTGCCCATTTCCATCCCCTCGCGCAACTGGGCCGCCTTTC 19706
|| || | | |||| ||||| || || || || | | || ||||| ||||||
Sbjct 17131 TCC-TCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTA 17189
Query 19707 GCGGCTGGAGTTTTACCCGCCTAAAAACCAAGGAAACTCCCTCACTCGGCTCGGGTTTCG 19766
| || ||| ||||| | |||||| ||||||| || | | ||||| | || |
Sbjct 17190 GAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTG 17249
Query 19767 ACCCCTACTTTGTCTACTCAGGCTCCATCCCCTACCTTGACGGGACCTTCTACCTCAACC 19826
|||| |||||| ||||| ||||| ||||| || || | |||||| || | |
Sbjct 17250 ACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTC 17309
Query 19827 ACACCTTCAAGAAGGTCTCCATTATGTTCGACTCCTCGGTTAGCTGGCCCGGCAATGACC 19886
|||| ||| ||||| |||| ||| || || || || || ||||| || ||||||
Sbjct 17310 ACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACA 17369
Query 19887 GGCTGCTTACGCCGAACGAGTTCGAGATTAAGCGCAGCGTCGACGGGGAGGGCTATAACG 19946
| || | | || || || || | || || | || |||| ||| |||||||||
Sbjct 17370 GACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACA 17429
Query 19947 TGGCCCAATGCAACATGACCAAGGACTGGTTCCTTATCCAGATGCTTTCCCACTACAACA 20006
| || ||| || || ||||| |||| | || || ||||| | |||||||| |
Sbjct 17430 CCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATA 17489
Query 20007 TTGGCTACCAGGGCTTCCACGTGCCTGAGGGCTACAAGGACCGCATGTACTCCTTCTTCC 20066
| || ||||| || || ||| | || | || || || | |||| ||||| ||
Sbjct 17490 TCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAA 17549
Query 20067 GCAACTTCCAGCCCATGAGTAGGCAGGTGGTCGATGAGATTAACTAC--AAGGATTACAA 20124
| || || | |||||| |||| || || || ||| ||| || || || |||
Sbjct 17550 GAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAA-GACGGAAAAATATCAA 17608
Query 20125 GGCCGTTGCCCTGCCCTTCCAGCACAACAACTCGGGCTTCACCGGCTACCTCGCACCTAC 20184
||||||| || | ||||| || || || || || | | | | |||
Sbjct 17609 -CCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTT 17667
Query 20185 CATGCGCCAGGGGCAGCCCTACCCCGCCAACTTCCCCTACCCGCTTATTGGAGAGACCGC 20244
||| || || || || || ||| |||| || | |||||| || ||||| ||
Sbjct 17668 TGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGC 17727
Query 20245 CGTGCCCTCCGTCACCCaaaaaaaGTTCCTCTGCGACAGGGTCATGTGGCGCATCCCATT 20304
| || | || || | ||| || | || ||||| ||||| | || || ||
Sbjct 17728 AGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTT 17787
Query 20305 CTCCAGCAACTTCATGTCTATGGGCGCCCTTACCGACCTGGGTCAAAACATGCTTTACGC 20364
|||| |||||| ||||| ||||| | || || || ||||| ||||| |||| || ||
Sbjct 17788 CTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGC 17847
Query 20365 CAACTCGGCGCACGCGCTCGACATGACCTTTGAGGTGGACCCCATGGATGAGCCCACCCT 20424
|| || || || || | |||||||| | || || || | ||||| || || ||
Sbjct 17848 AAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTA 17907
Query 20425 CCTCTATCTTCTCTTTGAAGTTTTCGACGTGGTCAGAGTGCACCAGCCGCACCGCGGCGT 20484
||| | || |||||||| || ||| || ||||||||| ||||| || || || ||
Sbjct 17908 TCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGT 17967
Query 20485 CATCGAGGCCGTCTACCTGCGCACGCCCTTCTCCGCCGGCAACGCCACCACCTAA 20539
||| || | | || || | || ||||| || || || |||||| | || |||
Sbjct 17968 CATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022
Score = 141 bits (156), Expect = 2e-29
Identities = 427/649 (66%), Gaps = 18/649 (3%)
Strand=Plus/Plus
Query 6020 ATTTGGTCAGAAAAGACTAtttttttATTGTCAAGCTTGGTGGCAAAGGAGCCATAGAGG 6079
||||| || | ||| | |||||||||||| || | | ||||||||||||| || || ||
Sbjct 5574 ATTTGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGT 5633
Query 6080 GCGTTGGAGAGAAGCTTGGCGATGGATCTCATGGT-CTGATTTTTGTCACGGTCGGCGCG 6138
||||| || | || || |||||| || | || ||| || | || || |||
Sbjct 5634 GCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTG-TTGTGGTTTTTTTCCGCGGC 5692
Query 6139 CTCCTTGGCCGCAATGTTGAGCTGG--ACATATTCGCGCGCAACGCACTTCCATTCGGGA 6196
||| || ||||| || || || ||| || ||||| | || ||||| ||||| | |
Sbjct 5693 CTCTTTTGCCGCTATATT-AG-TGGCTACGTATTCTCTTGCCACGCAATTCCACTGCTCA 5750
Query 6197 AAAACAGTGGTGCGCTCGTCGGGCACAATCCTGACGCGCCAGCCTCGGTTATGCAGGGTG 6256
|| || || ||||| || || || | ||| | ||| ||||| ||||||| ||
Sbjct 5751 AATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAAAGTA 5810
Query 6257 ACCAGGTCCACGCTGGTGGCCACCTCGCCGCGCAGGGGCTCGTTAGTCCAGCAGAGGCGC 6316
| || | | ||| || ||||| | | || || |||||||| || |||
Sbjct 5811 ATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAGACGC 5870
Query 6317 CCGCCCTTGCGCGAGCAAAAAGGTGGTAACACATCAAGCAAATGCTCGTCAGGGGGGTCC 6376
||||| || | ||| ||||| || ||||| ||||| | | | ||| |||||| |||
Sbjct 5871 CCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGGGGCGTCA 5930
Query 6377 GCATCGATGGTAAAGATGCCCGGACAGAGTTCCTTGTCAAAATAATCAATTTT-TAA--G 6433
||||| || || ||| |||| | || | ||||||||| |||||| | | |
Sbjct 5931 GCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTCACCG 5990
Query 6434 GATGCATCATCCAAGGCCATTTGCCAGTTGCGGGCG-GCCAGGGCTCGCTCGCAGGGGTT 6492
| |||| | || |||| || | | |||| | || || |||| ||
Sbjct 5991 GTTGCA-------AAGCGTTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATT 6043
Query 6493 CAGGGGCGGACCCCAGGGCATGGGATGCGTAAGCGCGGAGGCGTACATGCCGCAGATGTC 6552
|| || || || |||||||||||||||| | ||| ||| ||||| ||| | || ||
Sbjct 6044 AAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATC 6103
Query 6553 ATACACATAGATGGGCTCCGAGAGGATGCCGATGTAGGTGGGATAACAGCGCCCCCCGCG 6612
||| ||||| || || ||| | | || ||||| ||||| || || || ||||| |
Sbjct 6104 ATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCT 6163
Query 6613 GATGCTGGCGCGCACGTAGTCATACAACTCATGCGAGGGTGCCAAGAAG 6661
|||||| | | || | ||||| | || || || || ||| |||||
Sbjct 6164 GATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCC-AGAAG 6211
Score = 105 bits (116), Expect = 1e-18
Identities = 134/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 17703 CGAAGATGGCCACCCCCTCGATGATGCCGCAGTGGGCGTACATGCACATCGCCGGGCAGG 17762
||||||||||||| ||||||||| | ||||| ||| | ||| | || ||||| || || |
Sbjct 15309 CGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAG 15368
Query 17763 ACGCCTCGGAGTACCTGAGCCCGGGTCTGGTG-CAGTTTGCCCGCGCCACCGACACGTAC 17821
| || || || || | | | | | | ||| || ||||| |||| ||||| ||||||
Sbjct 15369 ATGCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427
Query 17822 TTCAGCCTGGGCAACAAGTTTAGAAACCCCACGGTGGCTCCCACCCACGATGTGACCACG 17881
|| ||| || | || |||||||| || ||||| || || || |||||||| || |||
Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487
Query 17882 GA 17883
||
Sbjct 15488 GA 15489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 111535985635412
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |