Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_012959.1 Length=34920 Score E Sequences producing significant alignments: (Bits) Value seq4931 441 2e-119 >seq4931 Length=27746 Score = 441 bits (488), Expect = 2e-119 Identities = 1250/1915 (65%), Gaps = 42/1915 (2%) Strand=Plus/Plus Query 18631 GCCAAACAGGCCAAACTACATTGGCTTCAGGGACAACTTTGTAGGCCTTATGTACTACAA 18690 ||||||||||||||| || || || || ||||| |||||| | || | |||| || || Sbjct 16144 GCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAA 16203 Query 18691 CAGCACTGGCAACATGGGTGTGCTAGCTGGTCAGGCCTCTCAGTTGAATGCTGTGGTTGA 18750 ||| | | |||| ||||||| |||| ||||| | || ||| | |||||||| | || Sbjct 16204 CAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGA 16263 Query 18751 CTTACAAGACAGAAACACGGAGCTGTCTTACCAGCTTTTGCTAGATTCTCTGGGTGACAG 18810 | | ||||||||||| || || |||| || |||||| || ||||| | | || || Sbjct 16264 CCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAG 16323 Query 18811 AACCAGATACTTTAGTATGTGGAACTCTGCGGTGGACAGTTACGATCCAGATGTCAGGAT 18870 ||| |||| | || ||||||| || ||||| || |||||||| ||| | || Sbjct 16324 AACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAAT 16383 Query 18871 TATTGAGAATCACGGTGTGGAAGATGAACTTCCAAACTATTGCTTTCCATTGGACGGAGC 18930 || || ||| || || ||||| ||||||||||| ||||||||||| || ||| Sbjct 16384 CATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATG 16443 Query 18931 TGGTACTAATGCTACATATCAGGGTGTTAAAGTTAAAAATGGACAGG--ATGGTGACAAC 18988 | | ||| || | ||| | |||||| | |||||||||| | || ||| Sbjct 16444 TTCTCCTATTGAT---TATACTGCTGTTAA---TCAAAATGGACAAGCAAT-----CAAT 16492 Query 18989 AACGCAGAATGGGAGAAAGACAATGCAGTTGCGGATCGAAACCAAATTTGCAAGGGTAAC 19048 ||| ||| || | |||| | | || | |||| || || Sbjct 16493 AAC----AAT------AACCCTGCGCAGGTTCTTATAG-----------GCAAAGGAAAT 16531 Query 19049 ATCGTCGCCATGGAAATTAACCTTCAGGCCAACCTGTGGAAAAGTTTTCTGTACTCGAAC 19108 | | ||||||||| ||| | ||||||||||||||| | ||||||||| || || Sbjct 16532 GTTGAATGCATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAAT 16591 Query 19109 GTGGCCTTGTACCTGCCCGACTCCTTTAAGTACACGCCGGCCAACGTCACACTGCC-CAC 19167 | || |||| |||||||| |||||| ||| || || || || | |||| || Sbjct 16592 ATCGCGCTGTATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCGCAG 16651 Query 19168 CAACNNNNNNNNNNNNGAGTACATGAACGGGCGCGTGGTGGCCCCCTCGCTGGTGGACGC 19227 | | | |||||||| ||| | ||| ||||| || | Sbjct 16652 GATCAGCGGCTATAT-GCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGA 16710 Query 19228 TTACGTTAACATTGGCGCCCGCTGGTCACTGGACCCCATGGACAACGTTAACCCCTTTAA 19287 ||| | ||||| || || | |||||| | || ||||||| ||||| || ||||| Sbjct 16711 TTATATCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAA 16770 Query 19288 CCACCACCGCAACGCGGGCCTGCGCTATCGCTCCATGCTGCTGGGCAACGGGCGCTACGT 19347 || ||| | || | || || | || | || ||| | || || || ||||| | Sbjct 16771 TCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGC 16830 Query 19348 GCCCTTTCACATCCAAGTGCCCCAAAAGTTCTTTGCCATTAAAAACCTGCTCCTGCTCCC 19407 ||||||| || || || || |||||||| ||||| |||||| |||| ||||| || Sbjct 16831 TTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACC 16890 Query 19408 GGGCTCCTACACCTACGAGTGGAACTTCCGCAAGGACGTCAACATGATCCTGCAGAGTTC 19467 ||| || |||| ||||| ||| || | || || || |||||||| |||||||| | Sbjct 16891 GGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTAC 16950 Query 19468 CCTGGGCAACGACCTGCGCGTCGACGGCGCCTCCGTCCGCTTTGACAGTGTGAACCTCTA 19527 || ||||| || ||| | | ||||| || || || |||||||| | | ||| | Sbjct 16951 TCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATT 17010 Query 19528 CGCCACCTTCTTCCCCATGGCGCACAACACCGCCTCCACCCTGGAAGCCATGCTGCGCAA 19587 || || ||||| || ||| | || ||||| || || || |||||| | ||||| ||||| Sbjct 17011 TGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAA 17070 Query 19588 CGACACCAACGACCAGTCCTTCAACGACTACCTCTCGGCCGCCAACATGCTTTACCCCAT 19647 || ||||| ||||||||| |||||| || || || ||||||||||| | || Sbjct 17071 TGAGGTTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTAT 17130 Query 19648 CCCGGCCAAGGCCACCAAC-GTGCCCATTTCCATCCCCTCGCGCAACTGGGCCGCCTTTC 19706 || || | | |||| ||||| || || || || | | || ||||| |||||| Sbjct 17131 TCC-TCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTA 17189 Query 19707 GCGGCTGGAGTTTTACCCGCCTAAAAACCAAGGAAACTCCCTCACTCGGCTCGGGTTTCG 19766 | || ||| ||||| | |||||| ||||||| || | | ||||| | || | Sbjct 17190 GAGGTTGGGCATTTACTAGACTAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTG 17249 Query 19767 ACCCCTACTTTGTCTACTCAGGCTCCATCCCCTACCTTGACGGGACCTTCTACCTCAACC 19826 |||| |||||| ||||| ||||| ||||| || || | |||||| || | | Sbjct 17250 ACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTC 17309 Query 19827 ACACCTTCAAGAAGGTCTCCATTATGTTCGACTCCTCGGTTAGCTGGCCCGGCAATGACC 19886 |||| ||| ||||| |||| ||| || || || || || ||||| || |||||| Sbjct 17310 ACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACA 17369 Query 19887 GGCTGCTTACGCCGAACGAGTTCGAGATTAAGCGCAGCGTCGACGGGGAGGGCTATAACG 19946 | || | | || || || || | || || | || |||| ||| ||||||||| Sbjct 17370 GACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACA 17429 Query 19947 TGGCCCAATGCAACATGACCAAGGACTGGTTCCTTATCCAGATGCTTTCCCACTACAACA 20006 | || ||| || || ||||| |||| | || || ||||| | |||||||| | Sbjct 17430 CCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATA 17489 Query 20007 TTGGCTACCAGGGCTTCCACGTGCCTGAGGGCTACAAGGACCGCATGTACTCCTTCTTCC 20066 | || ||||| || || ||| | || | || || || | |||| ||||| || Sbjct 17490 TCGGATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAA 17549 Query 20067 GCAACTTCCAGCCCATGAGTAGGCAGGTGGTCGATGAGATTAACTAC--AAGGATTACAA 20124 | || || | |||||| |||| || || || ||| ||| || || || ||| Sbjct 17550 GAAATTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAA-GACGGAAAAATATCAA 17608 Query 20125 GGCCGTTGCCCTGCCCTTCCAGCACAACAACTCGGGCTTCACCGGCTACCTCGCACCTAC 20184 ||||||| || | ||||| || || || || || | | | | ||| Sbjct 17609 -CCCGTTGCTCTTAAATATCAGCATAATAATTCAGGTTTTAAAAACCATTATGGACCCTT 17667 Query 20185 CATGCGCCAGGGGCAGCCCTACCCCGCCAACTTCCCCTACCCGCTTATTGGAGAGACCGC 20244 ||| || || || || || ||| |||| || | |||||| || ||||| || Sbjct 17668 TGGGCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACAGGC 17727 Query 20245 CGTGCCCTCCGTCACCCaaaaaaaGTTCCTCTGCGACAGGGTCATGTGGCGCATCCCATT 20304 | || | || || | ||| || | || ||||| ||||| | || || || Sbjct 17728 AGGTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTT 17787 Query 20305 CTCCAGCAACTTCATGTCTATGGGCGCCCTTACCGACCTGGGTCAAAACATGCTTTACGC 20364 |||| |||||| ||||| ||||| | || || || ||||| ||||| |||| || || Sbjct 17788 CTCCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGC 17847 Query 20365 CAACTCGGCGCACGCGCTCGACATGACCTTTGAGGTGGACCCCATGGATGAGCCCACCCT 20424 || || || || || | |||||||| | || || || | ||||| || || || Sbjct 17848 AAATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTA 17907 Query 20425 CCTCTATCTTCTCTTTGAAGTTTTCGACGTGGTCAGAGTGCACCAGCCGCACCGCGGCGT 20484 ||| | || |||||||| || ||| || ||||||||| ||||| || || || || Sbjct 17908 TCTCATGATGCTATTTGAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGT 17967 Query 20485 CATCGAGGCCGTCTACCTGCGCACGCCCTTCTCCGCCGGCAACGCCACCACCTAA 20539 ||| || | | || || | || ||||| || || || |||||| | || ||| Sbjct 17968 CATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAA 18022 Score = 141 bits (156), Expect = 2e-29 Identities = 427/649 (66%), Gaps = 18/649 (3%) Strand=Plus/Plus Query 6020 ATTTGGTCAGAAAAGACTAtttttttATTGTCAAGCTTGGTGGCAAAGGAGCCATAGAGG 6079 ||||| || | ||| | |||||||||||| || | | ||||||||||||| || || || Sbjct 5574 ATTTGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACCGTACAGT 5633 Query 6080 GCGTTGGAGAGAAGCTTGGCGATGGATCTCATGGT-CTGATTTTTGTCACGGTCGGCGCG 6138 ||||| || | || || |||||| || | || ||| || | || || ||| Sbjct 5634 GCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTG-TTGTGGTTTTTTTCCGCGGC 5692 Query 6139 CTCCTTGGCCGCAATGTTGAGCTGG--ACATATTCGCGCGCAACGCACTTCCATTCGGGA 6196 ||| || ||||| || || || ||| || ||||| | || ||||| ||||| | | Sbjct 5693 CTCTTTTGCCGCTATATT-AG-TGGCTACGTATTCTCTTGCCACGCAATTCCACTGCTCA 5750 Query 6197 AAAACAGTGGTGCGCTCGTCGGGCACAATCCTGACGCGCCAGCCTCGGTTATGCAGGGTG 6256 || || || ||||| || || || | ||| | ||| ||||| ||||||| || Sbjct 5751 AATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCAAAGTA 5810 Query 6257 ACCAGGTCCACGCTGGTGGCCACCTCGCCGCGCAGGGGCTCGTTAGTCCAGCAGAGGCGC 6316 | || | | ||| || ||||| | | || || |||||||| || ||| Sbjct 5811 ATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAAGACGC 5870 Query 6317 CCGCCCTTGCGCGAGCAAAAAGGTGGTAACACATCAAGCAAATGCTCGTCAGGGGGGTCC 6376 ||||| || | ||| ||||| || ||||| ||||| | | | ||| |||||| ||| Sbjct 5871 CCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGGGGCGTCA 5930 Query 6377 GCATCGATGGTAAAGATGCCCGGACAGAGTTCCTTGTCAAAATAATCAATTTT-TAA--G 6433 ||||| || || ||| |||| | || | ||||||||| |||||| | | | Sbjct 5931 GCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAATTTTGTCACCG 5990 Query 6434 GATGCATCATCCAAGGCCATTTGCCAGTTGCGGGCG-GCCAGGGCTCGCTCGCAGGGGTT 6492 | |||| | || |||| || | | |||| | || || |||| || Sbjct 5991 GTTGCA-------AAGCGTTTTGAATACTGATAGAGAGCCAAGTTTCTGTCAAAGGGATT 6043 Query 6493 CAGGGGCGGACCCCAGGGCATGGGATGCGTAAGCGCGGAGGCGTACATGCCGCAGATGTC 6552 || || || || |||||||||||||||| | ||| ||| ||||| ||| | || || Sbjct 6044 AAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAATATC 6103 Query 6553 ATACACATAGATGGGCTCCGAGAGGATGCCGATGTAGGTGGGATAACAGCGCCCCCCGCG 6612 ||| ||||| || || ||| | | || ||||| ||||| || || || ||||| | Sbjct 6104 ATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCCTCT 6163 Query 6613 GATGCTGGCGCGCACGTAGTCATACAACTCATGCGAGGGTGCCAAGAAG 6661 |||||| | | || | ||||| | || || || || ||| ||||| Sbjct 6164 GATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCC-AGAAG 6211 Score = 105 bits (116), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 17703 CGAAGATGGCCACCCCCTCGATGATGCCGCAGTGGGCGTACATGCACATCGCCGGGCAGG 17762 ||||||||||||| ||||||||| | ||||| ||| | ||| | || ||||| || || | Sbjct 15309 CGAAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAG 15368 Query 17763 ACGCCTCGGAGTACCTGAGCCCGGGTCTGGTG-CAGTTTGCCCGCGCCACCGACACGTAC 17821 | || || || || | | | | | | ||| || ||||| |||| ||||| |||||| Sbjct 15369 ATGCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTAC 15427 Query 17822 TTCAGCCTGGGCAACAAGTTTAGAAACCCCACGGTGGCTCCCACCCACGATGTGACCACG 17881 || ||| || | || |||||||| || ||||| || || || |||||||| || ||| Sbjct 15428 TTTTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACG 15487 Query 17882 GA 17883 || Sbjct 15488 GA 15489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111535985635412