Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq66 129 1e-24 seq91 127 5e-24 seq147 122 2e-22 seq84 109 1e-18 seq61 100 7e-16 seq36 98.7 2e-15 seq1 96.9 8e-15 seq74 93.3 1e-13 seq148 84.2 5e-11 seq37 84.2 5e-11 >seq66 Length=5789316 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| |||| ||||||||||| || || | |||||| Sbjct 2649879 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 2649820 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| || ||| ||||| ||| Sbjct 2649819 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 2649760 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || |||| ||||| ||| Sbjct 2649759 TGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2649700 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 2649699 TTGCCAGTCAGGGTCTTCACGAAGATCTG 2649671 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| |||| ||||||||||| || || | |||||| Sbjct 2649651 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 2649592 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| | | |||||| || || || || || ||| Sbjct 2649591 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCC 2649532 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || ||||| ||||| ||| Sbjct 2649531 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 2649472 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| || || Sbjct 2649471 TTGCCAGTCAGGGTCTTCACAAAGATCTG 2649443 >seq91 Length=4965619 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || || ||||| ||||||||||||| ||||||||||| ||||| Sbjct 1585555 CGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTT 1585614 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||||||||||||| || || ||||| || | ||||| || || | |||||| Sbjct 1585615 TGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCT 1585674 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | || || | | ||| || | | Sbjct 1585675 TCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGT 1585734 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || ||||| | ||||| || Sbjct 1585735 GTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTG 1585772 Score = 91.5 bits (100), Expect = 3e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| || || |||||| ||||||||||| ||||| | || |||||| Sbjct 1585654 AAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAACA 1585595 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||| || ||||| |||||||| || || ||||||||||| Sbjct 1585594 TCCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTCG 1585555 >seq147 Length=2532799 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| | ||| | ||||| Sbjct 2383933 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 2383874 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| || | ||||||||| ||| || || ||| || Sbjct 2383873 TTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTATC 2383814 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | ||| || | | || || || | ||||| || Sbjct 2383813 CTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCTAGAGTGATGGT 2383754 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || ||||| || || || Sbjct 2383753 CTTGCCAGTCAAGGTCTTCACGAAGATCTG 2383724 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || ||||| || |||| ||||||||||| | ||| | |||||| Sbjct 2384160 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 2384101 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || |||||||| || | ||||||||| ||| || || ||| ||| Sbjct 2384100 TCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCC 2384041 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | ||| || | | || || |||| || || ||| Sbjct 2384040 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTC 2383981 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 2383980 TTGCCGGTCAGGGTCTTCACGAAGATCTG 2383952 >seq84 Length=7487594 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| || || || ||||| ||||||||||| | |||| | |||| ||||| | Sbjct 757426 AAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAATCAGATAAAGTACA 757485 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||| |||||||||| || || ||| | || | ||||| || ||| ||||||||| Sbjct 757486 TCCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTC 757545 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| ||||| ||| || ||| | || || | | ||| |||| | | Sbjct 757546 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACATTGAGTAT 757605 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||| || || ||||| || ||||| | ||||| Sbjct 757606 GATGGTTTTCCCCGTAAGGGTTTTGATGAAAAT 757638 >seq61 Length=10587387 Score = 100 bits (110), Expect = 7e-16 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| | || || | ||| | ||||||||| | ||||||||||| ||||| Sbjct 1945081 CGAAGTCTCAATTCTAGATGAAAAGTGGGCTCCTTTTGAATGTTGTAGTCAGATAAAGTA 1945140 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||||||||| || || ||| | || |||||| || ||| ||||||| Sbjct 1945141 CATCCATCTTCCAGCTGCTTACCAGCAAAG--GTCACTCTGCTGATCAGGAGGAATTCCT 1945198 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||| ||||| Sbjct 1945199 TCCTTATCCTGGATCTT 1945215 >seq36 Length=17049061 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||||| || | |||| ||||| ||||||||||| | ||||||||||| || || | Sbjct 13827125 AAGTCCCAACAGTAGGTAAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAGGT-AT 13827183 Query 199471 TCCATCTTCCAGCTGCTTT-CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||||||||||||||||| ||||| ||||| || | || || | |||| |||||| | Sbjct 13827184 TCCATCTTCCAGCTGCTTTCCCGGCAAAGATCAGTCTTTGTTGACCAGGAAGAATTCCAT 13827243 Query 199530 CTCGCTCCTGAATCTT 199545 || || ||| ||||| Sbjct 13827244 CTTTCTTCTGGATCTT 13827259 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489 || || ||||| || |||| ||||||||||| | ||| |||||||||| |||||| Sbjct 7362836 AGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCACCTGCTTG 7362895 Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||| || | ||||||||| ||| ||| || ||| ||||| ||||| | Sbjct 7362896 CCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGGCC 7362955 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 ||||| || | ||| || | | || || |||| | || ||||| || || || Sbjct 7362956 TTCACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGGATAATGGTCTTGCCGGTCAGG 7363015 Query 199610 GTTTTCACAAAAATTTGGTACATTTTAGCCT 199640 || |||| || || || |||| | |||| Sbjct 7363016 GTCTTCATGAAGATCTG---CATTCTGGCCT 7363043 >seq1 Length=68039765 Score = 96.9 bits (106), Expect = 8e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||| ||| | || || || ||||| ||||||||||| | ||||||||||| | || | Sbjct 38753666 GAAATCTTAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTAC 38753607 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||| |||||||||||| || | ||||| || | ||||| || ||| |||||||| Sbjct 38753606 GTCCATTTTCCAGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 38753547 Query 199530 CTCGCTCCTGAATCTT 199545 | ||||||||||| Sbjct 38753546 CCTTATCCTGAATCTT 38753531 >seq74 Length=6199102 Score = 93.3 bits (102), Expect = 1e-13 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||| ||||| || |||| ||||| ||||||||||| | | ||||||||| ||||| | Sbjct 2522988 GAAATCTCAACACTGGGTGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGT-AAAGTAC 2523046 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||||||||||| |||| || || ||||| || | ||||| || | | |||||||| Sbjct 2523047 ATCCATCTTCCAGCCGCTTACCTGCAAAGATCAGGCTTTGCTGATCAGAAGGAATTCCTT 2523106 Query 199530 C 199530 | Sbjct 2523107 C 2523107 >seq148 Length=5416653 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 199437 ACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGA 199496 ||||| |||| | |||| ||| | ||| | | ||||| |||||||||||| || || | Sbjct 991071 ACTCCCTTTGAATGTTGCAGTTGGATAAAATACGTCCATATTCCAGCTGCTTACCAGCAA 991130 Query 199497 AGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGG 199556 |||| || | ||||| || || ||||||||| ||||| ||||| ||| || Sbjct 991131 AGATCAGTCTTTGCTGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACAT 991190 Query 199557 ATTCGACGGTGTCTGTTGTTTCTACATCCA-ACGTGATCGTCTTACCCGTGAGAGTTTTC 199615 ||| | || |||| | ||| || || | |||| || || ||||| || ||||| Sbjct 991191 TTTCTATAGTATCTGAGGGTTCAACTTCGAGTTATGATGGTTTTCCCCGTAAGGGTTTTG 991250 Query 199616 ACAAAAATTTG 199626 |||||||| || Sbjct 991251 ACAAAAATCTG 991261 >seq37 Length=17180107 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||| | ||||| |||||||||||||||||||| || || |||| Sbjct 14171924 CCTTTTGGATGTTGTAGTCGGATAAAGTTCTTCCATCTTCCAGCTGCTTACCAGCAAAGA 14171865 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | ||||| || || ||||||| Sbjct 14171864 TTAGTCTTTGCTGATCAGGTGGAATTCCT 14171836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177936864102931