Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq66 129 1e-24
seq91 127 5e-24
seq147 122 2e-22
seq84 109 1e-18
seq61 100 7e-16
seq36 98.7 2e-15
seq1 96.9 8e-15
seq74 93.3 1e-13
seq148 84.2 5e-11
seq37 84.2 5e-11
>seq66
Length=5789316
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| ||||| |||||||| |||| ||||||||||| || || | ||||||
Sbjct 2649879 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 2649820
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || ||||| || | ||||||||| || ||| ||||| |||
Sbjct 2649819 TCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 2649760
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || |||| ||||| |||
Sbjct 2649759 TGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 2649700
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || || ||
Sbjct 2649699 TTGCCAGTCAGGGTCTTCACGAAGATCTG 2649671
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| ||||| |||||||| |||| ||||||||||| || || | ||||||
Sbjct 2649651 AGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 2649592
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || ||||| | | |||||| || || || || || |||
Sbjct 2649591 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCC 2649532
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| |||||| | | || || ||||| ||||| |||
Sbjct 2649531 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 2649472
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || |||||||| || ||
Sbjct 2649471 TTGCCAGTCAGGGTCTTCACAAAGATCTG 2649443
>seq91
Length=4965619
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| || || || ||||| ||||||||||||| ||||||||||| |||||
Sbjct 1585555 CGAAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTT 1585614
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|||||||||||||||||| || || ||||| || | ||||| || || | ||||||
Sbjct 1585615 TGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCT 1585674
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || ||| | || || | | ||| || | |
Sbjct 1585675 TCCTTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGT 1585734
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || ||||| || ||||| | ||||| ||
Sbjct 1585735 GTGATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTG 1585772
Score = 91.5 bits (100), Expect = 3e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989
||| ||| ||||| || || |||||| ||||||||||| ||||| | || ||||||
Sbjct 1585654 AAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAACA 1585595
Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
|||| || ||||| |||||||| || || |||||||||||
Sbjct 1585594 TCCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACTTCG 1585555
>seq147
Length=2532799
Score = 122 bits (134), Expect = 2e-22
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| ||||| || || |||||||| |||| ||||||||||| | ||| | |||||
Sbjct 2383933 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 2383874
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || |||||||| || | ||||||||| ||| || || ||| ||
Sbjct 2383873 TTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTATC 2383814
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| ||||| |||||| || | ||| || | | || || || | ||||| ||
Sbjct 2383813 CTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTCTAGAGTGATGGT 2383754
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || | || ||||| || || ||
Sbjct 2383753 CTTGCCAGTCAAGGTCTTCACGAAGATCTG 2383724
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || ||||| || || ||||| || |||| ||||||||||| | ||| | ||||||
Sbjct 2384160 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 2384101
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || |||||||| || | ||||||||| ||| || || ||| |||
Sbjct 2384100 TCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCC 2384041
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| |||||| || | ||| || | | || || |||| || || |||
Sbjct 2384040 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTC 2383981
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || || ||
Sbjct 2383980 TTGCCGGTCAGGGTCTTCACGAAGATCTG 2383952
>seq84
Length=7487594
Score = 109 bits (120), Expect = 1e-18
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
|||||||| || || || ||||| ||||||||||| | |||| | |||| ||||| |
Sbjct 757426 AAGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAATCAGATAAAGTACA 757485
Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
||||||| |||||||||| || || ||| | || | ||||| || ||| |||||||||
Sbjct 757486 TCCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTC 757545
Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590
||||| ||||| ||| || ||| | || || | | ||| |||| | |
Sbjct 757546 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACATTGAGTAT 757605
Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623
||| || || ||||| || ||||| | |||||
Sbjct 757606 GATGGTTTTCCCCGTAAGGGTTTTGATGAAAAT 757638
>seq61
Length=10587387
Score = 100 bits (110), Expect = 7e-16
Identities = 105/137 (77%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| | || || | ||| | ||||||||| | ||||||||||| |||||
Sbjct 1945081 CGAAGTCTCAATTCTAGATGAAAAGTGGGCTCCTTTTGAATGTTGTAGTCAGATAAAGTA 1945140
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||||||||| || || ||| | || |||||| || ||| |||||||
Sbjct 1945141 CATCCATCTTCCAGCTGCTTACCAGCAAAG--GTCACTCTGCTGATCAGGAGGAATTCCT 1945198
Query 199529 TCTCGCTCCTGAATCTT 199545
|| ||||| |||||
Sbjct 1945199 TCCTTATCCTGGATCTT 1945215
>seq36
Length=17049061
Score = 98.7 bits (108), Expect = 2e-15
Identities = 105/136 (77%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
||||| || | |||| ||||| ||||||||||| | ||||||||||| || || |
Sbjct 13827125 AAGTCCCAACAGTAGGTAAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAGGT-AT 13827183
Query 199471 TCCATCTTCCAGCTGCTTT-CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
||||||||||||||||||| ||||| ||||| || | || || | |||| |||||| |
Sbjct 13827184 TCCATCTTCCAGCTGCTTTCCCGGCAAAGATCAGTCTTTGTTGACCAGGAAGAATTCCAT 13827243
Query 199530 CTCGCTCCTGAATCTT 199545
|| || ||| |||||
Sbjct 13827244 CTTTCTTCTGGATCTT 13827259
Score = 95.1 bits (104), Expect = 3e-14
Identities = 148/211 (70%), Gaps = 3/211 (1%)
Strand=Plus/Plus
Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489
|| || ||||| || |||| ||||||||||| | ||| |||||||||| ||||||
Sbjct 7362836 AGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCACCTGCTTG 7362895
Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549
|| |||||||| || | ||||||||| ||| ||| || ||| ||||| ||||| |
Sbjct 7362896 CCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCTTTATCCTGGATCTTGGCC 7362955
Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609
||||| || | ||| || | | || || |||| | || ||||| || || ||
Sbjct 7362956 TTCACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGGATAATGGTCTTGCCGGTCAGG 7363015
Query 199610 GTTTTCACAAAAATTTGGTACATTTTAGCCT 199640
|| |||| || || || |||| | ||||
Sbjct 7363016 GTCTTCATGAAGATCTG---CATTCTGGCCT 7363043
>seq1
Length=68039765
Score = 96.9 bits (106), Expect = 8e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469
||| ||| | || || || ||||| ||||||||||| | ||||||||||| | || |
Sbjct 38753666 GAAATCTTAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTAC 38753607
Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
||||| |||||||||||| || | ||||| || | ||||| || ||| ||||||||
Sbjct 38753606 GTCCATTTTCCAGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 38753547
Query 199530 CTCGCTCCTGAATCTT 199545
| |||||||||||
Sbjct 38753546 CCTTATCCTGAATCTT 38753531
>seq74
Length=6199102
Score = 93.3 bits (102), Expect = 1e-13
Identities = 94/121 (78%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469
||| ||||| || |||| ||||| ||||||||||| | | ||||||||| ||||| |
Sbjct 2522988 GAAATCTCAACACTGGGTGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGT-AAAGTAC 2523046
Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
||||||||||||| |||| || || ||||| || | ||||| || | | ||||||||
Sbjct 2523047 ATCCATCTTCCAGCCGCTTACCTGCAAAGATCAGGCTTTGCTGATCAGAAGGAATTCCTT 2523106
Query 199530 C 199530
|
Sbjct 2523107 C 2523107
>seq148
Length=5416653
Score = 84.2 bits (92), Expect = 5e-11
Identities = 134/191 (70%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 199437 ACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGA 199496
||||| |||| | |||| ||| | ||| | | ||||| |||||||||||| || || |
Sbjct 991071 ACTCCCTTTGAATGTTGCAGTTGGATAAAATACGTCCATATTCCAGCTGCTTACCAGCAA 991130
Query 199497 AGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGG 199556
|||| || | ||||| || || ||||||||| ||||| ||||| ||| ||
Sbjct 991131 AGATCAGTCTTTGCTGATCAGGTGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACAT 991190
Query 199557 ATTCGACGGTGTCTGTTGTTTCTACATCCA-ACGTGATCGTCTTACCCGTGAGAGTTTTC 199615
||| | || |||| | ||| || || | |||| || || ||||| || |||||
Sbjct 991191 TTTCTATAGTATCTGAGGGTTCAACTTCGAGTTATGATGGTTTTCCCCGTAAGGGTTTTG 991250
Query 199616 ACAAAAATTTG 199626
|||||||| ||
Sbjct 991251 ACAAAAATCTG 991261
>seq37
Length=17180107
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||||| ||||||||| | ||||| |||||||||||||||||||| || || ||||
Sbjct 14171924 CCTTTTGGATGTTGTAGTCGGATAAAGTTCTTCCATCTTCCAGCTGCTTACCAGCAAAGA 14171865
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || | ||||| || || |||||||
Sbjct 14171864 TTAGTCTTTGCTGATCAGGTGGAATTCCT 14171836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177936864102931
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