Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq66 145 9e-30 seq147 123 3e-23 >seq66 Length=5789316 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||| | |||||| |||| || |||||| ||||| |||||||| | Sbjct 2649668 TGCCACCTCGGAGACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 2649609 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || || ||||||||||| || || ||||| | |||||| || | | Sbjct 2649608 ACAGGGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTG 2649549 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||||| || | | ||||| || | |||| Sbjct 2649548 GTATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCA 2649489 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | |||| |||||||| ||||| ||||| || || |||||||| |||||| Sbjct 2649488 CCTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 2649439 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || ||||| | |||||| |||| || |||||| ||||| |||||||| || Sbjct 2649894 CCTCCCCTCAAACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649835 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 2649834 AGGGTACGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2649775 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| || | | ||||| || | ||||| Sbjct 2649774 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 2649715 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 2649714 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668 >seq147 Length=2532799 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| ||||| |||| || |||||| ||||| |||||||| || Sbjct 2383947 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 2383888 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| ||||| |||| | ||||||||| | || Sbjct 2383887 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 2383828 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| || ||| |||||| ||| | || | | || || || | || || Sbjct 2383827 ATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACC 2383768 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | |||||||| ||||| |||| || || || ||||| |||||| || Sbjct 2383767 TCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATTCTG 2383717 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | ||||| |||| || ||| || ||||| |||||||| || Sbjct 2384176 GCCACCCCTGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 2384117 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| ||||| |||| | ||||||||||| || Sbjct 2384116 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGG 2384057 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||| || ||| |||||| ||| | || | | || || || | ||||| Sbjct 2384056 GATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCAC 2383997 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| ||||| ||||| || || || ||||| ||||| Sbjct 2383996 CTCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564777780162360