Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq66 134 1e-26 seq147 118 1e-21 seq36 93.3 4e-14 seq20 89.7 5e-13 >seq66 Length=5789316 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2649668 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2649727 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 2649728 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 2649787 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | |||||||| |||||||| || | || ||||| ||||||||| Sbjct 2649788 CAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 2649847 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| ||||||| |||||||| || || Sbjct 2649848 ATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTTTGAGGGGAGG 2649894 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2649439 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 2649498 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| ||||| ||||| || || | || || Sbjct 2649499 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCACCTGATCA 2649558 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || ||||| |||||||| || | || ||||| |||||||| Sbjct 2649559 GCAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 2649618 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| ||||||| ||| | |||| ||| Sbjct 2649619 CATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTCTCCGAGGTGGC 2649667 >seq147 Length=2532799 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || ||||| |||||||| | || || ||| ||| Sbjct 2383720 AATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTTGAGCCCAG 2383779 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | || | || |||| || |||||||| || || | ||||| Sbjct 2383780 TGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCTGACCA 2383839 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | ||||| || |||||||| Sbjct 2383840 GCAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 2383899 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| |||||| ||||||| || Sbjct 2383900 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 2383947 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||| ||| | || || ||| ||| Sbjct 2383949 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 2384008 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| || |||||||| || || ||||||| Sbjct 2384009 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCCGACCAG 2384068 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| ||||| |||||||| || | ||||| || ||||||||| Sbjct 2384069 CAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 2384128 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||| |||| || ||| | || || ||| Sbjct 2384129 ATCCAGAAAGAGTCCACCCTGCACCTGGTTCTCCGTCTCAGGGGTGGC 2384176 >seq36 Length=17049061 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||| | || || || || ||||| ||||| | | | || || ||| ||| Sbjct 7363036 AATGCAGATCTTCATGAAGACCCTGACCGGCAAGACCATTATCCTGGAGGTGGAGCCCAT 7362977 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | || | || |||| || |||||||| ||||| | ||||| Sbjct 7362976 TGATACCATTGAGAAAGTGAAGGCCAAGATCCAGGATAAAGAGGGCATTCCTCCTGACCA 7362917 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| ||| |||| || | | ||| || |||||||| Sbjct 7362916 GCAGAGGCTGATCTTCGCAGGCAAGCAGGTGGAAGATGGCCACACTCTTTCTGACTACAA 7362857 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || | | |||| || ||| | || |||||| Sbjct 7362856 CATCCAGAAAGAGTCTACCCTTCGTCTGGTTCTCCGTCTCAGGGGCGGC 7362808 >seq20 Length=25211774 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 133385 TGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCC 133444 ||||| || |||||||| | |||||||| || |||||||| || || ||||| || Sbjct 21312186 TGGACGGGATTACCTCCTCAGCTGTCCAAAAGGAAGCCTCGGCCTTCTTATACATCTGCC 21312245 Query 133445 ACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCG 133504 | ||||| |||| || ||||| | |||||| |||||||||||||| | || ||||| Sbjct 21312246 AAATGTCGTGGTATTCGATTGGAAAGACCACAAAGCGGCGGGGGTTTTCTCTCAGCAGCG 21312305 Query 133505 GCTC 133508 | || Sbjct 21312306 GTTC 21312309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499765202933120