Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq66 134 1e-26
seq147 118 1e-21
seq36 93.3 4e-14
seq20 89.7 5e-13
>seq66
Length=5789316
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || || ||| |||
Sbjct 2649668 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2649727
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| || || |||||| | |||||
Sbjct 2649728 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 2649787
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | |||||||| |||||||| || | || ||||| |||||||||
Sbjct 2649788 CAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 2649847
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| ||||| | || ||||| ||||||| |||||||| || ||
Sbjct 2649848 ATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTTTGAGGGGAGG 2649894
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || || || || || ||||| ||||||||| | || || ||| |||
Sbjct 2649439 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 2649498
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | | || | || |||| ||||| ||||| || || | || ||
Sbjct 2649499 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATACCACCTGATCA 2649558
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | || ||||| |||||||| || | || ||||| ||||||||
Sbjct 2649559 GCAGAGGTTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 2649618
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| | || ||||| ||||||| ||| | |||| |||
Sbjct 2649619 CATCCAGAAGGAGTCCACTCTGCACCTGGTGCTCCGTCTCCGAGGTGGC 2649667
>seq147
Length=2532799
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||||| || || | || ||||| |||||||| | || || ||| |||
Sbjct 2383720 AATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTAGAGGTTGAGCCCAG 2383779
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | | | || | || |||| || |||||||| || || | |||||
Sbjct 2383780 TGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCTGACCA 2383839
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| || | ||| ||||| |||||||| || | ||||| || ||||||||
Sbjct 2383840 GCAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 2383899
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || ||||| |||| |||||| ||||||| ||
Sbjct 2383900 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 2383947
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||| ||| | || || ||| |||
Sbjct 2383949 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 2384008
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || | || |||| || |||||||| || || |||||||
Sbjct 2384009 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCTCCCGACCAG 2384068
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | ||| ||||| |||||||| || | ||||| || |||||||||
Sbjct 2384069 CAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 2384128
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| || || | || ||||| |||| || ||| | || || |||
Sbjct 2384129 ATCCAGAAAGAGTCCACCCTGCACCTGGTTCTCCGTCTCAGGGGTGGC 2384176
>seq36
Length=17049061
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||| | || || || || ||||| ||||| | | | || || ||| |||
Sbjct 7363036 AATGCAGATCTTCATGAAGACCCTGACCGGCAAGACCATTATCCTGGAGGTGGAGCCCAT 7362977
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | | | || | || |||| || |||||||| ||||| | |||||
Sbjct 7362976 TGATACCATTGAGAAAGTGAAGGCCAAGATCCAGGATAAAGAGGGCATTCCTCCTGACCA 7362917
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| |||| || | ||| ||||| ||| |||| || | | ||| || ||||||||
Sbjct 7362916 GCAGAGGCTGATCTTCGCAGGCAAGCAGGTGGAAGATGGCCACACTCTTTCTGACTACAA 7362857
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| || || | || || | | |||| || ||| | || ||||||
Sbjct 7362856 CATCCAGAAAGAGTCTACCCTTCGTCTGGTTCTCCGTCTCAGGGGCGGC 7362808
>seq20
Length=25211774
Score = 89.7 bits (98), Expect = 5e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 133385 TGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCC 133444
||||| || |||||||| | |||||||| || |||||||| || || ||||| ||
Sbjct 21312186 TGGACGGGATTACCTCCTCAGCTGTCCAAAAGGAAGCCTCGGCCTTCTTATACATCTGCC 21312245
Query 133445 ACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCG 133504
| ||||| |||| || ||||| | |||||| |||||||||||||| | || |||||
Sbjct 21312246 AAATGTCGTGGTATTCGATTGGAAAGACCACAAAGCGGCGGGGGTTTTCTCTCAGCAGCG 21312305
Query 133505 GCTC 133508
| ||
Sbjct 21312306 GTTC 21312309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499765202933120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |