Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq259 149 2e-30 seq84 118 4e-21 seq202 114 5e-20 seq91 105 3e-17 seq88 89.7 2e-12 seq79 87.8 7e-12 >seq259 Length=1089711 Score = 149 bits (164), Expect = 2e-30 Identities = 230/330 (70%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 || ||||||||||| |||||| | ||| | || | ||| | |||| | ||||| Sbjct 698227 AAGATGAAAGAAACTGCAGAAAATTATTTGGGACATGCAGCAAAAAATGCTATGATTACC 698168 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || ||||||||||||||| |||| | || || ||||| ||||| || || || | Sbjct 698167 GTCCCTGCTTATTTCAATGATTCACAGAGACAGGCCACTAAGGATGCTGGCCAGATATCA 698108 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 || ||||||| ||| | | ||||||||| | ||||| |||||||| || | ||| ||| Sbjct 698107 GGACTAAATGTGCTTTGGGTGATTAATGAAGCCACAGCTGCTGCTCTGGCCTGTGGTCTA 698048 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 | |||| | ||||| ||| ||| || | |||||| ||||| |||| | Sbjct 698047 GACAAAT---------CTGAAGACAAAGCCATTGCTGTGTATGATTTAGGTGGTGGAATT 697997 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 ||||| |||||| || |||| | | || |||| | | || || | |||||||| Sbjct 697996 TTTGATATTTCTGTCCTGGAAATTCAGAAAGGCGTATCTAAGGTGAAATCCACCAATGGG 697937 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGAT 451603 ||||| |||| |||||||| ||||| Sbjct 697936 AATACTTTCTTAGGTGGTGAAGACTTTGAT 697907 >seq84 Length=7487594 Score = 118 bits (130), Expect = 4e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||||| |||||| | ||||| || || || ||||| || | || |||||||| | || Sbjct 757644 ATGAAGATTTTCATCAAAACCCTTACGGGGAAAACCATCATACTCAATGTTGAACCCTCG 757585 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || |||||||||||||||||||||||||| Sbjct 757584 GATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 757525 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | ||| || | || || || || | ||||||| | ||||| | |||| || Sbjct 757524 CAAAGACTAAACTTTGCTGGTAAGCAGCTGGGAGATGGATGTACTTTATCTGATTGCAAC 757465 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| ||||||| ||||| Sbjct 757464 ATTCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACT 757427 >seq202 Length=1299801 Score = 114 bits (126), Expect = 5e-20 Identities = 263/392 (67%), Gaps = 7/392 (2%) Strand=Plus/Plus Query 451216 TTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAA 451275 ||||||||| || | ||| |||| ||||| || || || || ||||| || || || Sbjct 1282872 TTATAAAGGGGAGAAGAAAGCTTTCTACCCTGAGGAGATCTCTTCAATGGTACTGACCAA 1282931 Query 451276 AATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTAATTACTG 451334 |||||||| || ||||| | | |||| | | | || || |||| || || || | Sbjct 1282932 GATGAAAGAGACTGCAGAGGCTTTT-TTGGGCCACACTGTCACCAATGCCGTGATCACCG 1282990 Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTG 451394 | || || ||||||||||| | ||||| || || || || |||||||| || || | Sbjct 1282991 TGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTGTGATCGCAG 1283050 Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 | | ||||| || |||| || |||||||| || |||||||| | || ||||| ||| Sbjct 1283051 GCCTCAATGTGCTAAGAATCATCAATGAACCCACTGCAGCTGCCATTGCCTATGGTTTAG 1283110 Query 451455 GAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 || || ||| | || | || | | | |||||| | |||||||| || Sbjct 1283111 ----ATAAAGGTGGACAGGGGGAGCGACATGTCCTCATCTTTGATCTGGGTGGAGGCACC 1283166 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 |||| || | || | || || |||||| | ||||| |||||||| || ||| Sbjct 1283167 TTTGATGTATCCATCCTGACTATAGACGATGGGATTTTTGAGGTAAAGGCTACAGCTGGG 1283226 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || | || || || || ||||||| Sbjct 1283227 GACACCCACTTGGGTGGGGAGGACTTTGATAA 1283258 >seq91 Length=4965619 Score = 105 bits (116), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| ||||||| || || || ||||| || || || | |||||| | || Sbjct 1585775 ATGCAGATTTTCATTAAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCG 1585716 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || |||||||||||||| | |||||||| Sbjct 1585715 GATACTATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAG 1585656 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || || || ||||||||| |||||| | || || || Sbjct 1585655 CAAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAAC 1585596 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || ||||| ||||||| ||||| Sbjct 1585595 ATCCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACT 1585558 >seq88 Length=8851128 Score = 89.7 bits (98), Expect = 2e-12 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 96050 GCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAAGGAT 96109 ||||| | ||||||| |||||| || ||||| || ||| ||| | | || | ||| Sbjct 910692 GCAATCTCAGGCACTAAGGGATCATCTGGATTGGGATCACACAACAGAGAACAGATGGAC 910751 Query 96110 AAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACAA 96169 ||||||||||| ||| ||| |||||| ||| | || |||||| | |||| Sbjct 910752 AAAAGTACTTTTGAAATAGTTAGTGCTGGAGACCACTGTGACCGTAGAATATCAAGACAA 910811 Query 96170 ATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGGA 96229 || || || | ||||||||||||||||||| ||| ||||| || ||||| Sbjct 910812 ATGCTCCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTAGGT 910871 Query 96230 GGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCATAG 96289 || || | || || ||| || ||| |||| || ||||||||||||| |||| Sbjct 910872 GGTTTGAAGGGGTAATCTGTTGGGAAATGAATTGTCAAGAAAAATACTCCACCCTGATAG 910931 Query 96290 GG 96291 || Sbjct 910932 GG 910933 >seq79 Length=7578575 Score = 87.8 bits (96), Expect = 7e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 127419 ATATGCTTCCGAAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTT 127478 |||||| || | | |||||| ||||||| || ||||||| ||| || | | |||| || Sbjct 1602262 ATATGCCTCAGCTACTTCTTTGAATTTTTTCTCTGCTTCTTCTTTATTTTCTGGATTTTT 1602203 Query 127479 ATCAGGATGATGTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTC 127526 |||||| || ||||| |||| |||| |||||||||||||||| || Sbjct 1602202 ATCAGGGTGCCATTTAAGTGCTACTTTATGGTAAGCTTTTTTAATGTC 1602155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974068111438844