Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq259 149 2e-30
seq84 118 4e-21
seq202 114 5e-20
seq91 105 3e-17
seq88 89.7 2e-12
seq79 87.8 7e-12
>seq259
Length=1089711
Score = 149 bits (164), Expect = 2e-30
Identities = 230/330 (70%), Gaps = 9/330 (3%)
Strand=Plus/Minus
Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333
|| ||||||||||| |||||| | ||| | || | ||| | |||| | |||||
Sbjct 698227 AAGATGAAAGAAACTGCAGAAAATTATTTGGGACATGCAGCAAAAAATGCTATGATTACC 698168
Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393
|| || ||||||||||||||| |||| | || || ||||| ||||| || || || |
Sbjct 698167 GTCCCTGCTTATTTCAATGATTCACAGAGACAGGCCACTAAGGATGCTGGCCAGATATCA 698108
Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453
|| ||||||| ||| | | ||||||||| | ||||| |||||||| || | ||| |||
Sbjct 698107 GGACTAAATGTGCTTTGGGTGATTAATGAAGCCACAGCTGCTGCTCTGGCCTGTGGTCTA 698048
Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513
| |||| | ||||| ||| ||| || | |||||| ||||| |||| |
Sbjct 698047 GACAAAT---------CTGAAGACAAAGCCATTGCTGTGTATGATTTAGGTGGTGGAATT 697997
Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573
||||| |||||| || |||| | | || |||| | | || || | ||||||||
Sbjct 697996 TTTGATATTTCTGTCCTGGAAATTCAGAAAGGCGTATCTAAGGTGAAATCCACCAATGGG 697937
Query 451574 GATACTCATCTAGGAGGTGAAGATATTGAT 451603
||||| |||| |||||||| |||||
Sbjct 697936 AATACTTTCTTAGGTGGTGAAGACTTTGAT 697907
>seq84
Length=7487594
Score = 118 bits (130), Expect = 4e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||||| |||||| | ||||| || || || ||||| || | || |||||||| | ||
Sbjct 757644 ATGAAGATTTTCATCAAAACCCTTACGGGGAAAACCATCATACTCAATGTTGAACCCTCG 757585
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | || || || || ||||||||||||||||||||||||||
Sbjct 757584 GATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 757525
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | ||| || | || || || || | ||||||| | ||||| | |||| ||
Sbjct 757524 CAAAGACTAAACTTTGCTGGTAAGCAGCTGGGAGATGGATGTACTTTATCTGATTGCAAC 757465
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| ||||||| |||||
Sbjct 757464 ATTCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACT 757427
>seq202
Length=1299801
Score = 114 bits (126), Expect = 5e-20
Identities = 263/392 (67%), Gaps = 7/392 (2%)
Strand=Plus/Plus
Query 451216 TTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAA 451275
||||||||| || | ||| |||| ||||| || || || || ||||| || || ||
Sbjct 1282872 TTATAAAGGGGAGAAGAAAGCTTTCTACCCTGAGGAGATCTCTTCAATGGTACTGACCAA 1282931
Query 451276 AATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTAATTACTG 451334
|||||||| || ||||| | | |||| | | | || || |||| || || || |
Sbjct 1282932 GATGAAAGAGACTGCAGAGGCTTTT-TTGGGCCACACTGTCACCAATGCCGTGATCACCG 1282990
Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTG 451394
| || || ||||||||||| | ||||| || || || || |||||||| || || |
Sbjct 1282991 TGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTGTGATCGCAG 1283050
Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454
| | ||||| || |||| || |||||||| || |||||||| | || ||||| |||
Sbjct 1283051 GCCTCAATGTGCTAAGAATCATCAATGAACCCACTGCAGCTGCCATTGCCTATGGTTTAG 1283110
Query 451455 GAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513
|| || ||| | || | || | | | |||||| | |||||||| ||
Sbjct 1283111 ----ATAAAGGTGGACAGGGGGAGCGACATGTCCTCATCTTTGATCTGGGTGGAGGCACC 1283166
Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573
|||| || | || | || || |||||| | ||||| |||||||| || |||
Sbjct 1283167 TTTGATGTATCCATCCTGACTATAGACGATGGGATTTTTGAGGTAAAGGCTACAGCTGGG 1283226
Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAA 451605
|| || || | || || || || |||||||
Sbjct 1283227 GACACCCACTTGGGTGGGGAGGACTTTGATAA 1283258
>seq91
Length=4965619
Score = 105 bits (116), Expect = 3e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||| ||||||| || || || ||||| || || || | |||||| | ||
Sbjct 1585775 ATGCAGATTTTCATTAAAACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTCG 1585716
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | || || || || |||||||||||||| | ||||||||
Sbjct 1585715 GATACTATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATGCTACCTGATCAG 1585656
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || || | || || || || ||||||||| |||||| | || || ||
Sbjct 1585655 CAAAGACTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACAAACTTTATCTGACTACAAC 1585596
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
|| | ||||| | || ||||| ||||||| |||||
Sbjct 1585595 ATCCAAAAGGAGTCCACTCTTCATCTAGTATTGAGACT 1585558
>seq88
Length=8851128
Score = 89.7 bits (98), Expect = 2e-12
Identities = 165/242 (68%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 96050 GCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAAGGAT 96109
||||| | ||||||| |||||| || ||||| || ||| ||| | | || | |||
Sbjct 910692 GCAATCTCAGGCACTAAGGGATCATCTGGATTGGGATCACACAACAGAGAACAGATGGAC 910751
Query 96110 AAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACAA 96169
||||||||||| ||| ||| |||||| ||| | || |||||| | ||||
Sbjct 910752 AAAAGTACTTTTGAAATAGTTAGTGCTGGAGACCACTGTGACCGTAGAATATCAAGACAA 910811
Query 96170 ATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGGA 96229
|| || || | ||||||||||||||||||| ||| ||||| || |||||
Sbjct 910812 ATGCTCCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTAGGT 910871
Query 96230 GGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCATAG 96289
|| || | || || ||| || ||| |||| || ||||||||||||| ||||
Sbjct 910872 GGTTTGAAGGGGTAATCTGTTGGGAAATGAATTGTCAAGAAAAATACTCCACCCTGATAG 910931
Query 96290 GG 96291
||
Sbjct 910932 GG 910933
>seq79
Length=7578575
Score = 87.8 bits (96), Expect = 7e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 127419 ATATGCTTCCGAAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTT 127478
|||||| || | | |||||| ||||||| || ||||||| ||| || | | |||| ||
Sbjct 1602262 ATATGCCTCAGCTACTTCTTTGAATTTTTTCTCTGCTTCTTCTTTATTTTCTGGATTTTT 1602203
Query 127479 ATCAGGATGATGTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTC 127526
|||||| || ||||| |||| |||| |||||||||||||||| ||
Sbjct 1602202 ATCAGGGTGCCATTTAAGTGCTACTTTATGGTAAGCTTTTTTAATGTC 1602155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1974068111438844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |