Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq202 226 2e-53 seq10 127 2e-23 seq4 95.1 9e-14 seq55 86.0 5e-11 >seq202 Length=1299801 Score = 226 bits (250), Expect = 2e-53 Identities = 923/1436 (64%), Gaps = 28/1436 (2%) Strand=Plus/Minus Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 ||| || ||||| ||||||||||||||||| | ||||| || || || || ||||| || Sbjct 1284024 GGCTGTGACATTGAGAATACCATTGGCATCGATGTCAAACGTCACCTCGATCTGAGGAAC 1283965 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 || || | ||||| || || || || | ||| ||||| || || || | Sbjct 1283964 TCCCCTGGGTGCAGGAGGTATTCCAGTCAGGTCAAAGCGTCCCAACAGGTTGTTGTCCCT 1283905 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 || | || || ||||| | | ||||| || ||| || || ||||| || Sbjct 1283904 TGTCATCGCTCTCTCGCCCTCATATACCTGGATCAATACCCCAGGCTGGTTGTCTGAGTA 1283845 Query 517438 AGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496 || || || | |||| | | |||| || || || | ||| | | || | | | Sbjct 1283844 TGTGGTGAAGA-TCTGAGTCTGTTTAGTGGGGATGGTGGAGTTGCGCTTGATCAAGATAG 1283786 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 517556 |||| | ||| || ||||| || || || || || || |||| || || | | | | Sbjct 1283785 TCATCACACCCCCAGCTGTCTCCAATCCCAGGGAGAGGGGAGCTACGTCCAGCAAAAGCA 1283726 Query 517557 TATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616 || || | || ||| | | ||| | | ||||||||| || | ||||| |||| Sbjct 1283725 GATCCTGCACCTTCTCAGACTTGTCACCCATCAAAATAGCTGCCTGGACTGCAGCTCCAT 1283666 Query 517617 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 517676 | || || |||||||| || || | | | | || || | ||||| ||| | | Sbjct 1283665 AGGCTACTGCTTCATCCGGGTTGATACTCTTGTTGAGATCACGGCCATTAAAATACTCCT 1283606 Query 517677 AAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 ||| ||| ||| |||||| || || || | || || || ||||| ||||| || || Sbjct 1283605 GAAGTAGTC-TCTGTACCTTCGGGATGCGGGTGGAGCCCCCTACTAAAACAATATCGTGG 1283547 Query 517736 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG---ACCC 517792 | | || ||||||| || | |||| | | |||||| || || || || |||| Sbjct 1283546 ATTTTAGACTTATCCATCTTGGCATCCCGAAGAGATTTTTCCACAGGCTCCAGGGTACCC 1283487 Query 517793 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATA 517851 |||||||| |||| ||| | ||||| || ||| ||||| || || | || | Sbjct 1283486 ---CTAAACAAATCTGCACACAACTCTTCAAAACGAGCCCTAGT--GATGGATGTGTAGA 1283432 Query 517852 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 | ||||| ||||| | | || |||| ||| | | | || || || || || | Sbjct 1283431 AGTCAATGCCTTCATAAAGTGAGTCAATTTCCAGGTTGGCCTGGGTGCTGGATGACAGAG 1283372 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGA 517966 | || || | ||||| || || | || | | | || |||| | ||| ||| Sbjct 1283371 TCCTCTTGGCCCTCTCACAGGCAGTGCGCAGCCGCCTCACAGCCCGCTTGTTCTGGCTGA 1283312 Query 517967 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 518026 | || | |||| || ||||| || || || ||| | | ||||| | ||| Sbjct 1283311 TG----TCCTTCTTATGCTTCCTCTTAAATTCCTCCACAAAGTGGCTCACAAGTCTGTTA 1283256 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || || || ||||| | || | || | ||||| |||| | |||| ||| Sbjct 1283255 TCAAAGTCCTCCCCACCCAAGTGGGTGTCCCCAGCTGTAGCCTTTACCTCAAAAATCCCA 1283196 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || || | || || | | ||||||| ||| || ||||||| |||||| || || ||| Sbjct 1283195 TCGTCTATAGTCAGGATGGATACATCAAAGGTGCCTCCACCCAGATCAAAGATGAGGACA 1283136 Query 518147 T-TCATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || | | |||| ||| ||| | |||||| |||| ||||| ||||| |||| Sbjct 1283135 TGTCGCTCCCCCTGTCCACCTTT--ATCTAAACCATAGGCAATGGCAGCTGCAGTGGGTT 1283078 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 |||| || ||||| | ||||| || || || || |||||||| || ||||| || | Sbjct 1283077 CATTGATGATTCTTAGCACATTGAGGCCTGCGATCACACCTGCATCCTTGGTGGCCTGGC 1283018 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAA 518324 ||| || || || ||||| || || || || || ||||||| || || | || | Sbjct 1283017 GTTGAGAGTCATTGAAATAGGCTGGCACGGTGATCACGGCATTGGTGACAGTGTGGCCCA 1282958 Query 518325 TATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384 | |||| ||| || | |||||| || | | | |||||| || || | || ||| Sbjct 1282957 AAAAAGCCTCTGCAGTCTCTTTCATCTTGGTCAGTACCATTGAAGAGATCTCCTCAGGGT 1282898 Query 518385 AATATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA 518443 | | |||| | || || ||| || || | | || || || |||| Sbjct 1282897 AGAAA-GCTTTCTTCTCCCCTTTATAAGACACCATCACTTTGGGCTTCCCTCCTTCATTG 1282839 Query 518444 ATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 518503 || |||| ||||||||| |||||||||||| || ||| | || ||||| | ||| Sbjct 1282838 ATCACTTGAAATGGCCAAAGTTTCATATCTGACTGTACAACAGGATCGTTAAATTTTCTG 1282779 Query 518504 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTG 518563 ||||| | ||||| |||||||| | |||||| || || || || | || | || Sbjct 1282778 CCAATCAGACGTTTGGCATCAAAGACAGTATTCTGCGGGTTCATGGCTACCTGGTTCTTA 1282719 Query 518564 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 518623 || ||||||||||| || | || || || || || | || || || || ||||| Sbjct 1282718 GCCGCATCTCCAATGAGCCGCTCGGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGG 1282659 Query 518624 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 || || || || || || || || || || || |||| || | || || ||||| Sbjct 1282658 TTGCCCTGGTCGTTGGCGATGATCTCCACCTTGCCATGCTGGAACACCCCCACACA 1282603 >seq10 Length=26250347 Score = 127 bits (140), Expect = 2e-23 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| ||||||||||||||| ||||| |||||||||| |||||| ||||||||| Sbjct 23030616 CCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCTCAGAACATTCAGACCAGCA 23030675 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || |||| |||||||| || || || | || || ||||| || ||||| || |||||| Sbjct 23030676 ATGGTTCCAGCATCTTTTGTTGCCTGGCGCTGAGAGTCGTTGAAGTATGCTGGGACAGTA 23030735 Query 518297 ATAACGGCAT 518306 | || |||| Sbjct 23030736 ACCACAGCAT 23030745 >seq4 Length=37912305 Score = 95.1 bits (104), Expect = 9e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057 |||| || ||||| ||||| |||| |||||||| | || || | || ||||||| Sbjct 26121588 TAGCTACTATAGCTTTTGGACTGGGCATTAATAAGGCTGACATTCGCAGAGTCATTCATT 26121647 Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117 |||| ||||| ||| | || ||| |||||||| ||||||||||||||||| || |||| Sbjct 26121648 ATGGTGCTCCTAAGGAAATGGAATCCTATTATCAGGAAATTGGTAGAGCAGGCCGCGATG 26121707 Query 367118 GA 367119 || Sbjct 26121708 GA 26121709 >seq55 Length=8345910 Score = 86.0 bits (94), Expect = 5e-11 Identities = 208/309 (67%), Gaps = 22/309 (7%) Strand=Plus/Plus Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 517155 |||| || ||||| ||| ||||| || ||| || ||| || ||| | || |||| Sbjct 2138648 TTTCCAACTCATTCCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCAGCAAA 2138705 Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 517212 || | ||| || ||| ||| || ||||| | |||||| | | |||||| Sbjct 2138706 TTTCTCAGCATCATTAACCATCCTTTCAATCT---CTTCAGG---TGTCAGGCGATTCTG 2138759 Query 517213 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 517266 ||| ||||| || || || || |||||| ||| || || | || ||||| Sbjct 2138760 GTCATTGGTAATTGTGATCTTATT---TTTGTTCCCTGTACCCTTGTCTTCAGCTGTCAC 2138816 Query 517267 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 517326 |||||||||||| |||| | ||||| ||||||||||| || || ||||| | | Sbjct 2138817 CCGAAGAATACCATTCACATCTATTTCAAAGGTGACTTCAATCTGGGGTACCCCGCGGGG 2138876 Query 517327 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 517386 |||||| || || || || || |||||| |||||| | ||| ||||| || || Sbjct 2138877 AGCAGGAGGAATTCCAGTCAGATCAAATGTACCCAGAAGGTGATTGTCTTTTGTCAAAGG 2138936 Query 517387 TCGTTCACC 517395 ||||||||| Sbjct 2138937 TCGTTCACC 2138945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777587308594258