Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq202 226 2e-53
seq10 127 2e-23
seq4 95.1 9e-14
seq55 86.0 5e-11
>seq202
Length=1299801
Score = 226 bits (250), Expect = 2e-53
Identities = 923/1436 (64%), Gaps = 28/1436 (2%)
Strand=Plus/Minus
Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317
||| || ||||| ||||||||||||||||| | ||||| || || || || ||||| ||
Sbjct 1284024 GGCTGTGACATTGAGAATACCATTGGCATCGATGTCAAACGTCACCTCGATCTGAGGAAC 1283965
Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377
|| || | ||||| || || || || | ||| ||||| || || || |
Sbjct 1283964 TCCCCTGGGTGCAGGAGGTATTCCAGTCAGGTCAAAGCGTCCCAACAGGTTGTTGTCCCT 1283905
Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437
|| | || || ||||| | | ||||| || ||| || || ||||| ||
Sbjct 1283904 TGTCATCGCTCTCTCGCCCTCATATACCTGGATCAATACCCCAGGCTGGTTGTCTGAGTA 1283845
Query 517438 AGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496
|| || || | |||| | | |||| || || || | ||| | | || | | |
Sbjct 1283844 TGTGGTGAAGA-TCTGAGTCTGTTTAGTGGGGATGGTGGAGTTGCGCTTGATCAAGATAG 1283786
Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 517556
|||| | ||| || ||||| || || || || || || |||| || || | | | |
Sbjct 1283785 TCATCACACCCCCAGCTGTCTCCAATCCCAGGGAGAGGGGAGCTACGTCCAGCAAAAGCA 1283726
Query 517557 TATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616
|| || | || ||| | | ||| | | ||||||||| || | ||||| ||||
Sbjct 1283725 GATCCTGCACCTTCTCAGACTTGTCACCCATCAAAATAGCTGCCTGGACTGCAGCTCCAT 1283666
Query 517617 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 517676
| || || |||||||| || || | | | | || || | ||||| ||| | |
Sbjct 1283665 AGGCTACTGCTTCATCCGGGTTGATACTCTTGTTGAGATCACGGCCATTAAAATACTCCT 1283606
Query 517677 AAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735
||| ||| ||| |||||| || || || | || || || ||||| ||||| || ||
Sbjct 1283605 GAAGTAGTC-TCTGTACCTTCGGGATGCGGGTGGAGCCCCCTACTAAAACAATATCGTGG 1283547
Query 517736 ACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG---ACCC 517792
| | || ||||||| || | |||| | | |||||| || || || || ||||
Sbjct 1283546 ATTTTAGACTTATCCATCTTGGCATCCCGAAGAGATTTTTCCACAGGCTCCAGGGTACCC 1283487
Query 517793 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATA 517851
|||||||| |||| ||| | ||||| || ||| ||||| || || | || |
Sbjct 1283486 ---CTAAACAAATCTGCACACAACTCTTCAAAACGAGCCCTAGT--GATGGATGTGTAGA 1283432
Query 517852 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910
| ||||| ||||| | | || |||| ||| | | | || || || || || |
Sbjct 1283431 AGTCAATGCCTTCATAAAGTGAGTCAATTTCCAGGTTGGCCTGGGTGCTGGATGACAGAG 1283372
Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGA 517966
| || || | ||||| || || | || | | | || |||| | ||| |||
Sbjct 1283371 TCCTCTTGGCCCTCTCACAGGCAGTGCGCAGCCGCCTCACAGCCCGCTTGTTCTGGCTGA 1283312
Query 517967 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 518026
| || | |||| || ||||| || || || ||| | | ||||| | |||
Sbjct 1283311 TG----TCCTTCTTATGCTTCCTCTTAAATTCCTCCACAAAGTGGCTCACAAGTCTGTTA 1283256
Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086
||||| || || || ||||| | || | || | ||||| |||| | |||| |||
Sbjct 1283255 TCAAAGTCCTCCCCACCCAAGTGGGTGTCCCCAGCTGTAGCCTTTACCTCAAAAATCCCA 1283196
Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146
|| || | || || | | ||||||| ||| || ||||||| |||||| || || |||
Sbjct 1283195 TCGTCTATAGTCAGGATGGATACATCAAAGGTGCCTCCACCCAGATCAAAGATGAGGACA 1283136
Query 518147 T-TCATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204
| || | | |||| ||| ||| | |||||| |||| ||||| ||||| ||||
Sbjct 1283135 TGTCGCTCCCCCTGTCCACCTTT--ATCTAAACCATAGGCAATGGCAGCTGCAGTGGGTT 1283078
Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264
|||| || ||||| | ||||| || || || || |||||||| || ||||| || |
Sbjct 1283077 CATTGATGATTCTTAGCACATTGAGGCCTGCGATCACACCTGCATCCTTGGTGGCCTGGC 1283018
Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAA 518324
||| || || || ||||| || || || || || ||||||| || || | || |
Sbjct 1283017 GTTGAGAGTCATTGAAATAGGCTGGCACGGTGATCACGGCATTGGTGACAGTGTGGCCCA 1282958
Query 518325 TATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384
| |||| ||| || | |||||| || | | | |||||| || || | || |||
Sbjct 1282957 AAAAAGCCTCTGCAGTCTCTTTCATCTTGGTCAGTACCATTGAAGAGATCTCCTCAGGGT 1282898
Query 518385 AATATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA 518443
| | |||| | || || ||| || || | | || || || ||||
Sbjct 1282897 AGAAA-GCTTTCTTCTCCCCTTTATAAGACACCATCACTTTGGGCTTCCCTCCTTCATTG 1282839
Query 518444 ATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 518503
|| |||| ||||||||| |||||||||||| || ||| | || ||||| | |||
Sbjct 1282838 ATCACTTGAAATGGCCAAAGTTTCATATCTGACTGTACAACAGGATCGTTAAATTTTCTG 1282779
Query 518504 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTG 518563
||||| | ||||| |||||||| | |||||| || || || || | || | ||
Sbjct 1282778 CCAATCAGACGTTTGGCATCAAAGACAGTATTCTGCGGGTTCATGGCTACCTGGTTCTTA 1282719
Query 518564 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 518623
|| ||||||||||| || | || || || || || | || || || || |||||
Sbjct 1282718 GCCGCATCTCCAATGAGCCGCTCGGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGG 1282659
Query 518624 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679
|| || || || || || || || || || || |||| || | || || |||||
Sbjct 1282658 TTGCCCTGGTCGTTGGCGATGATCTCCACCTTGCCATGCTGGAACACCCCCACACA 1282603
>seq10
Length=26250347
Score = 127 bits (140), Expect = 2e-23
Identities = 106/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236
||||| |||| ||||||||||||||| ||||| |||||||||| |||||| |||||||||
Sbjct 23030616 CCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCTCAGAACATTCAGACCAGCA 23030675
Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296
|| |||| |||||||| || || || | || || ||||| || ||||| || ||||||
Sbjct 23030676 ATGGTTCCAGCATCTTTTGTTGCCTGGCGCTGAGAGTCGTTGAAGTATGCTGGGACAGTA 23030735
Query 518297 ATAACGGCAT 518306
| || ||||
Sbjct 23030736 ACCACAGCAT 23030745
>seq4
Length=37912305
Score = 95.1 bits (104), Expect = 9e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057
|||| || ||||| ||||| |||| |||||||| | || || | || |||||||
Sbjct 26121588 TAGCTACTATAGCTTTTGGACTGGGCATTAATAAGGCTGACATTCGCAGAGTCATTCATT 26121647
Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117
|||| ||||| ||| | || ||| |||||||| ||||||||||||||||| || ||||
Sbjct 26121648 ATGGTGCTCCTAAGGAAATGGAATCCTATTATCAGGAAATTGGTAGAGCAGGCCGCGATG 26121707
Query 367118 GA 367119
||
Sbjct 26121708 GA 26121709
>seq55
Length=8345910
Score = 86.0 bits (94), Expect = 5e-11
Identities = 208/309 (67%), Gaps = 22/309 (7%)
Strand=Plus/Plus
Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 517155
|||| || ||||| ||| ||||| || ||| || ||| || ||| | || ||||
Sbjct 2138648 TTTCCAACTCATTCCTAGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCAGCAAA 2138705
Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 517212
|| | ||| || ||| ||| || ||||| | |||||| | | ||||||
Sbjct 2138706 TTTCTCAGCATCATTAACCATCCTTTCAATCT---CTTCAGG---TGTCAGGCGATTCTG 2138759
Query 517213 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 517266
||| ||||| || || || || |||||| ||| || || | || |||||
Sbjct 2138760 GTCATTGGTAATTGTGATCTTATT---TTTGTTCCCTGTACCCTTGTCTTCAGCTGTCAC 2138816
Query 517267 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 517326
|||||||||||| |||| | ||||| ||||||||||| || || ||||| | |
Sbjct 2138817 CCGAAGAATACCATTCACATCTATTTCAAAGGTGACTTCAATCTGGGGTACCCCGCGGGG 2138876
Query 517327 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 517386
|||||| || || || || || |||||| |||||| | ||| ||||| || ||
Sbjct 2138877 AGCAGGAGGAATTCCAGTCAGATCAAATGTACCCAGAAGGTGATTGTCTTTTGTCAAAGG 2138936
Query 517387 TCGTTCACC 517395
|||||||||
Sbjct 2138937 TCGTTCACC 2138945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3777587308594258
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |