Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq22 82.4 9e-11 >seq22 Length=17426531 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||||| ||||||||||||| |||| | || || || || Sbjct 1406371 CTCATCTTTGCTAGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATTGTTCC 1406430 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| || || | ||| ||||||| ||| || || || || Sbjct 1406431 CAGATTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGACCATATATGGGGTGCC 1406490 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 |||||| || || |||| | ||| || | ||| Sbjct 1406491 CGTCTCTGTTTGAGACTCAATAATGGCATACCA 1406523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589500017271320