Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_015049.1
Length=124335
Score E
Sequences producing significant alignments: (Bits) Value
seq138 95.1 1e-14
seq294 82.4 6e-11
>seq138
Length=3020394
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/215 (71%), Gaps = 10/215 (5%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||||| || || | | ||| || |||| ||||
Sbjct 359896 CCTCATGCTGCACATGGCATGTGTATTTCTGTTCCTCCCCAGAAGGCACCACTATAGCTG 359837
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || ||||||||||| || |||||||| ||||| || ||| | | |
Sbjct 359836 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGTCTGGTCTCCACAAGCTCCATTTCCTGGG 359777
Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAG-CC 523
|| || ||| | ||||| ||||| | | || || |||||||| |||||| ||
Sbjct 359776 TC---TGATCTTC-CCCATCCCGCTGCCAGATCAGAGTGATCTCCGCAGGGTAGAAGCCC 359721
Query 524 AGTGGCCCAACATTTTAGTGTTACTTGACGGTCAG 558
||| ||||| || ||||| || || | | ||| ||
Sbjct 359720 AGT-GCCCAGCACTTTAGGGTGACCTCATGGTTAG 359687
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||| | ||||| | | ||| || | || ||||
Sbjct 348481 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACGATAGCTG 348422
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || ||||||||||| || |||||||| ||||| || ||| | | |
Sbjct 348421 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGTCTGGTCTCCACAAGCTCCATTTCCTGGG 348362
Query 469 TCAGTTGCTCTGC-TCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527
|| | | || | |||| | ||||| | | || || ||||| || ||||||||
Sbjct 348361 TCTGGTCTTCCCCATCCCGT-TGCCAGATCAGAGTGATCTCCGCGGGGTAGAAGCCCCGA 348303
Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAG 558
||||| ||||| || || || | | ||||||
Sbjct 348302 GCCCAGCATTTCAGGGTAACCTCATGGTCAG 348272
Score = 89.7 bits (98), Expect = 4e-13
Identities = 146/208 (70%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||| | ||||| | | ||| || | | ||||
Sbjct 905910 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCTG 905969
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||||| || || ||||| |||||| || ||| | | |
Sbjct 905970 CCCACTTCTGGAAGCTTCCATCTCCTGCAGGCCTGGTCTCCACCAGCTCCATTTCCTGGG 906029
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAG-AAGCCAGTG 527
|| ||| |||| | || |||| || | || || |||||||| ||| || |||||
Sbjct 906030 TCTGTTCCTCTCCATCCCGCAGCCAGGTCAGAGTGATCTCCGCAGGGTAGAAACCCAGT- 906088
Query 528 GCCCAACATTTTAGTGTTACTTGACGGT 555
||||| || ||||| || || | | |||
Sbjct 906089 GCCCAGCACTTTAGGGTCACATAATGGT 906116
Score = 82.4 bits (90), Expect = 6e-11
Identities = 123/175 (70%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||| | ||||| | | ||| || | | ||||
Sbjct 877978 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCTG 878037
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||||| || || ||||| |||||| || ||| | | |
Sbjct 878038 CCCACTTCTGGAAGCTTCCATCTCCTGCAGGCCTGGTCTCCACCAGCTCCATTTCCTGGG 878097
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523
|| | | |||| | || |||| || | ||| || |||||||| ||||||||
Sbjct 878098 TCTGCTCCTCTCCATCCCGCAGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCC 878152
Score = 82.4 bits (90), Expect = 6e-11
Identities = 123/175 (70%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||| | ||||| | | ||| | | | ||||
Sbjct 931367 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCATCACCACAGCTG 931308
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||||| || || ||||| |||||| || ||| | | |
Sbjct 931307 CCCACTTCTGGAAGCTTCCATCTCCTGCAGGCCTGGTCTCCACCAGCTCCATTTCCTGGG 931248
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523
|| ||| |||| | || |||| || | ||| || |||||||| ||||||||
Sbjct 931247 TCTGTTCCTCTCCATCCCGCAGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCC 931193
Score = 82.4 bits (90), Expect = 6e-11
Identities = 123/175 (70%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||| | || || | | ||| || | | ||||
Sbjct 1025953 CCTCATGCTGCACATGGCATGTGTATCTCTGTTCCTCCCCAGAAGGCACCACCACAGCTG 1025894
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||||| || || ||||| |||||| || ||| | | |
Sbjct 1025893 CCCACTTCTGGAAGCTTCCATCTCCTGCAGGCCTGGTCTCCACCAGCTCCATTTCCTGGG 1025834
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523
|| ||| |||| | || |||| || | ||| || |||||||| ||||||||
Sbjct 1025833 TCTGTTCCTCTCCATCCCGCAGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCC 1025779
>seq294
Length=82732
Score = 82.4 bits (90), Expect = 6e-11
Identities = 123/175 (70%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||| | ||||| | | ||| || | | ||||
Sbjct 34626 CCTCATGCTGCACATGGCATGTGTATCTGTGCTCCTCCCCAGAAGGCACCACCACAGCTG 34685
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||||| || || ||||| | |||| || ||| | | |
Sbjct 34686 CCCACTTCTGGAAGCTTCCATCTCCTGCAGGCCTGGTCTACACCAGCTCCATTTCCTGGG 34745
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523
|| | | |||||| || |||| || | ||| || |||||||| ||||||||
Sbjct 34746 TCTGCTCCTCTGCATCCCGCAGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCC 34800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397431174064008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |