Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq138 95.1 1e-14 seq294 82.4 6e-11 >seq138 Length=3020394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/215 (71%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| || || | | ||| || |||| |||| Sbjct 359896 CCTCATGCTGCACATGGCATGTGTATTTCTGTTCCTCCCCAGAAGGCACCACTATAGCTG 359837 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || |||||||| ||||| || ||| | | | Sbjct 359836 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGTCTGGTCTCCACAAGCTCCATTTCCTGGG 359777 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAG-CC 523 || || ||| | ||||| ||||| | | || || |||||||| |||||| || Sbjct 359776 TC---TGATCTTC-CCCATCCCGCTGCCAGATCAGAGTGATCTCCGCAGGGTAGAAGCCC 359721 Query 524 AGTGGCCCAACATTTTAGTGTTACTTGACGGTCAG 558 ||| ||||| || ||||| || || | | ||| || Sbjct 359720 AGT-GCCCAGCACTTTAGGGTGACCTCATGGTTAG 359687 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | || |||| Sbjct 348481 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACGATAGCTG 348422 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || |||||||| ||||| || ||| | | | Sbjct 348421 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGTCTGGTCTCCACAAGCTCCATTTCCTGGG 348362 Query 469 TCAGTTGCTCTGC-TCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || | | || | |||| | ||||| | | || || ||||| || |||||||| Sbjct 348361 TCTGGTCTTCCCCATCCCGT-TGCCAGATCAGAGTGATCTCCGCGGGGTAGAAGCCCCGA 348303 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAG 558 ||||| ||||| || || || | | |||||| Sbjct 348302 GCCCAGCATTTCAGGGTAACCTCATGGTCAG 348272 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 905910 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCTG 905969 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||||| || || ||||| |||||| || ||| | | | Sbjct 905970 CCCACTTCTGGAAGCTTCCATCTCCTGCAGGCCTGGTCTCCACCAGCTCCATTTCCTGGG 906029 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAG-AAGCCAGTG 527 || ||| |||| | || |||| || | || || |||||||| ||| || ||||| Sbjct 906030 TCTGTTCCTCTCCATCCCGCAGCCAGGTCAGAGTGATCTCCGCAGGGTAGAAACCCAGT- 906088 Query 528 GCCCAACATTTTAGTGTTACTTGACGGT 555 ||||| || ||||| || || | | ||| Sbjct 906089 GCCCAGCACTTTAGGGTCACATAATGGT 906116 Score = 82.4 bits (90), Expect = 6e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 877978 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCTG 878037 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||||| || || ||||| |||||| || ||| | | | Sbjct 878038 CCCACTTCTGGAAGCTTCCATCTCCTGCAGGCCTGGTCTCCACCAGCTCCATTTCCTGGG 878097 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523 || | | |||| | || |||| || | ||| || |||||||| |||||||| Sbjct 878098 TCTGCTCCTCTCCATCCCGCAGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCC 878152 Score = 82.4 bits (90), Expect = 6e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| | | | |||| Sbjct 931367 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCATCACCACAGCTG 931308 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||||| || || ||||| |||||| || ||| | | | Sbjct 931307 CCCACTTCTGGAAGCTTCCATCTCCTGCAGGCCTGGTCTCCACCAGCTCCATTTCCTGGG 931248 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523 || ||| |||| | || |||| || | ||| || |||||||| |||||||| Sbjct 931247 TCTGTTCCTCTCCATCCCGCAGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCC 931193 Score = 82.4 bits (90), Expect = 6e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | || || | | ||| || | | |||| Sbjct 1025953 CCTCATGCTGCACATGGCATGTGTATCTCTGTTCCTCCCCAGAAGGCACCACCACAGCTG 1025894 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||||| || || ||||| |||||| || ||| | | | Sbjct 1025893 CCCACTTCTGGAAGCTTCCATCTCCTGCAGGCCTGGTCTCCACCAGCTCCATTTCCTGGG 1025834 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523 || ||| |||| | || |||| || | ||| || |||||||| |||||||| Sbjct 1025833 TCTGTTCCTCTCCATCCCGCAGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCC 1025779 >seq294 Length=82732 Score = 82.4 bits (90), Expect = 6e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 34626 CCTCATGCTGCACATGGCATGTGTATCTGTGCTCCTCCCCAGAAGGCACCACCACAGCTG 34685 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||||| || || ||||| | |||| || ||| | | | Sbjct 34686 CCCACTTCTGGAAGCTTCCATCTCCTGCAGGCCTGGTCTACACCAGCTCCATTTCCTGGG 34745 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523 || | | |||||| || |||| || | ||| || |||||||| |||||||| Sbjct 34746 TCTGCTCCTCTGCATCCCGCAGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCC 34800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397431174064008