Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_015225.1 Length=35499 Score E Sequences producing significant alignments: (Bits) Value seq4931 457 2e-124 >seq4931 Length=27746 Score = 457 bits (506), Expect = 2e-124 Identities = 1266/1917 (66%), Gaps = 53/1917 (3%) Strand=Plus/Plus Query 18926 GCTCCAAACAGAGCTAATTACATTGGTTTTAGAGACAACTTTATTGGGTTAATGTATTAC 18985 || |||||||| | ||||| || |||||||| || |||||||| |||||||||| ||| Sbjct 16142 GCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTAT 16201 Query 18986 AATAGTACTGGAAATATGGGCGTGGTGGCCGGGCAGGCTTCTCAGCTTAATGCGGTGGTG 19045 || |||| | | ||| |||| || | ||||| || | || ||||||||||| || | Sbjct 16202 AACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATC 16261 Query 19046 GATTTGCAAGACAGAAACACAGAGTTGTCTTATCAGCTGATGCTGGATTCCATTGGGGAT 19105 || | ||||||||||| ||||| ||||| |||||||| ||| | ||| | ||| Sbjct 16262 GACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGAT 16321 Query 19106 CGCAGTCGGTACTTTTCCATGTGGAACCAGGCTGTGGACAGCTACGACCCTGATGTAAGA 19165 | | ||| || | | ||||||| || || ||||| || || || || || || Sbjct 16322 AGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGA 16381 Query 19166 ATTATTGAAAATCACGGGGTAGAGGATGAACTGCCAAACTACTGCTTTCCCTTGGGAGGA 19225 || || || ||| || ||||| || ||||| ||||| || |||||||| || ||| Sbjct 16382 ATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGA 16441 Query 19226 ATGGCAGTAACTGATACATATTCAGCT----ATAAAAACAGATAATGGAAACACCAACTG 19281 | | |||| ||| | ||| || |||| || || | || || ||| Sbjct 16442 TGTTCTCCTATTGAT---TATACTGCTGTTAATCAAAATGGACAA-GCAATCAATAACAA 16497 Query 19282 GA--CCTCAGATAGTACTTTTGCCGACAGAAATGAAATTGGCTCAGGAAACATGTTCGCC 19339 | ||| | || ||| | | || || ||||| | | | ||| | Sbjct 16498 TAACCCTGCGCAGGTTCTTATA--GGCA--AAGGAAAT--GTTGA------ATG-----C 16540 Query 19340 ATGGAAATTAACCTGCAGGCCAACCTCTGGCGCAGCTTCCTCTACTCCAACATCGGGCTC 19399 |||||||| ||| | ||||||||| ||| | || || || || || |||| ||| Sbjct 16541 ATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTG 16600 Query 19400 TACCTGCCAGACAGCCTCAAGTACACCCCCGACAACATTACCCTGCCCACCAACAAGAAC 19459 || ||||| || | | | || ||| |||| || | |||| || || | Sbjct 16601 TATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCG-----CAGGATC 16655 Query 19460 AGC-----TACGATTACATGAACGGTCGCGTTACGCCCCCCGGGCTCATTGACACCTACG 19514 ||| || | ||||||||| |||| || | || || || | || || Sbjct 16656 AGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGATTATA 16715 Query 19515 TCAATATTGGCGCGCGGTGGTCCCCCGACGTCATGGATAACATTAATCCCTTTAACCACC 19574 |||| || || | ||||||| || || ||||| | ||||||| ||||| || | Sbjct 16716 TCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATC 16775 Query 19575 ACCGCAATGCGGGCCTGCGCTACCGTTCCATGTTGTTGGGCAACGGCCGTTACGTGCCCT 19634 || | ||| | || || | ||| | || | | || || || || || || | ||| Sbjct 16776 ACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCT 16835 Query 19635 TCCACATCCAGGTGCCCCAAAAGTTTTTTGCCATTAAAAACCTCTTGCTCCTCCCGGGCT 19694 | || || ||||| || |||||||||||||| |||||| | | || || ||||| | Sbjct 16836 TTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGAT 16895 Query 19695 CCTACACCTACGAGTGGAACTTCCGCAAGGACGTGAACATGATTTTGCAAAGCACGCTAG 19754 | |||| ||||| ||| || | || || || |||||||||||||| || || || | Sbjct 16896 CGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTG 16955 Query 19755 GTAACGATCTGCGGGTGGACGGGGCCACCATTCGCTTTGACAGCATTAACCTCTACGCCA 19814 | || |||||| ||| |||||| || | | ||||||||||||| ||| | || | Sbjct 16956 GCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTA 17015 Query 19815 ACTTTTTTCCCATGGCGCACAACACCGCTTCCACCCTGGAAGCCATGCTGCGCAACGACA 19874 || ||||| ||| | || ||||| ||||| || |||||| | ||||| ||||| || Sbjct 17016 CTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGG 17075 Query 19875 CCAACGACCAGTCCTTTAACGACTACCTCTGCGCGGCCAACATGCTCTACCCCATTCCCG 19934 ||||| |||||||| |||||| || | | | |||||||| || | ||||| Sbjct 17076 TTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTCCTC 17135 Query 19935 CCAATGCCACCAGCGTGCCCATCTCCATCCCCTCCCGTAACTGGGCCGCTTTTCGAGGGT 19994 | || || | ||||| ||||| || || | | || ||||| || ||| |||| | Sbjct 17136 CGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTT 17195 Query 19995 GGAGCTTTACCCGTCTGAAAACCA-AAGAAACCCCCGCCCTGGGTTCTGGTTTCGATCCC 20053 || ||||| | || ||||| | | ||||| || || | || |||| || || || Sbjct 17196 GGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCA 17254 Query 20054 TACTTTGTGTACTCGGGCACCATTCCCTATTTGGATGGCACTTTTTACCTTAAC-CACAC 20112 |||||| |||||||||| | || || |||| ||||| || ||||| ||| | ||||| Sbjct 17255 TACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTA-TTTATCTCACAC 17313 Query 20113 CTTTAAAAAGGTGTCCATCATGTTTGATTCCTCCGTTAGCTGGCCGGGCAACGATCGCCT 20172 | | ||||||| |||| ||||||||| || || || ||||| || || || | || Sbjct 17314 TATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACT 17373 Query 20173 GCTCACGCCCAACGAGTTTGAAATTAAACGTTCGGTGGACGGGGAAGGCTACAACGTGGC 20232 | | || || || ||| | || ||| | |||||||| ||||||||| ||| | Sbjct 17374 TTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTC 17433 Query 20233 CCAGTGTAACATGACCAAGGACTGGTTTTTAATTCAGATGCTAAGCCACTACAACATTGG 20292 ||| | | || || ||||| |||| | | ||||| ||||| |||||||| || || Sbjct 17434 TCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGG 17493 Query 20293 TTACCAGGGCTTTTACGTGCCTGAAGGATACAAGGACAGAATGTACTCCTTTTTTAGAAA 20352 ||||| || ||| || | || || || || || ||| |||| |||||||| ||||| Sbjct 17494 ATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAA 17553 Query 20353 CTTCCAGCCCATGAGTCGGCAGGTGGTGGACACGGTTAACTATGCCGACTA-CAAAGAGG 20411 || | |||||| || | || || ||||| | | ||| | | || ||| | Sbjct 17554 TTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGT 17613 Query 20412 TGAATTTACCTTACCAGCACAACAACTCAGGCTTCGTGGGTTACAT--GGGCCCCACCAT 20469 || ||| || ||||| || || ||||| || | ||| || ||| Sbjct 17614 TGCTCTTA-AATATCAGCATAATAATTCAGGTTT--TAAAAACCATTATGGACCCTTTGG 17670 Query 20470 GCGGGAGGGCCAGGCCTACCCGGCCAACTACCCCTACCCCCTCATTGG-GCCCACCGCCG 20528 ||| | ||||| | || || |||| || | ||| ||||| || | || || | Sbjct 17671 GCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACA-GGCAG 17729 Query 20529 TGCCCAGCCTCACGCAGAAAAAGTTCCTCTGCGACCGCGTTATGTGGCGCATCCCGTTTT 20588 | | | || |||| ||| || | || ||| | ||||| | || ||||| | Sbjct 17730 GTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCT 17789 Query 20589 CCAGCAACTTCATGTCCATGGGGGCGCTCACGGACCTGGGCCAGAACATGCTCTACGCCA 20648 || |||||| ||||||||||| | || || || ||||| || || |||| || || | Sbjct 17790 CCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAA 17849 Query 20649 ACTCGGCGCACGCGCTCGACATGACCTTCGAGGTGGACCCCATGGATGAGCCCACCCTTC 20708 | || || || || | |||||||| |||| || || | ||||| || || || || Sbjct 17850 ATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATC 17909 Query 20709 TCTATG-TTCTGTTCGAAGTTTTCGACGTCGTGC-GCATCCACCAGCCGCACCGCGGCGT 20766 || ||| | || || ||||| || ||| | |||| | | || ||||| || || || || Sbjct 17910 TC-ATGATGCTATTTGAAGTATTTGACAT-GTGCAGAGTGCATCAGCCTCAACGAGGTGT 17967 Query 20767 CATCGAAGCCGTCTACCTGCGCACGCCCTTCTCGGCCGGCAACGCCACCACCTAAAT 20823 ||| |||| | || || | || ||||| ||||| || |||||| | || ||||| Sbjct 17968 CATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAAAT 18024 Score = 93.3 bits (102), Expect = 1e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 18068 AAGATGGCCACCCCCTCCATGATGCCCCAGTGGTCGTACATGCACATCGCCGGTCAGGAC 18127 ||||||||||| ||||| ||| | || || ||||| ||| | || ||||| || || || Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370 Query 18128 GCCTCGGAGTACCTGAGCCCCGGCCTGGTG-CAGTTCGCGCGGGCCACGGACACGTACTT 18186 || || || || | | | || || | ||| || || || | || || || |||||||| Sbjct 15371 GCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429 Query 18187 TAGCCTGGGTAACAAGTTTCGCAACCCCACGGTGGCGCCGACCCACGACGTGACCACGGA 18246 | ||| | | || ||| | || || ||||| |||||||| ||||| || || ||||| Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489 Query 18247 CCGTTCGCAG 18256 | |||||| Sbjct 15490 AAGATCGCAG 15499 Score = 82.4 bits (90), Expect = 2e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 6513 AGGGGTTGAGCGGCGGCCCCCAGGGCATGGGGTGGGTGAGGGCCGAGGCGTACATGCCGC 6572 |||| || || || || || |||||||||| || || | || ||| ||||| ||| Sbjct 6037 AGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGG 6096 Query 6573 AGATGTCGTAGACGTAGAGGGGCTCCTCGAGGACGCCGATGTAGGTGGGGTAGCAGCGGC 6632 | || || || || || | || ||||| | || || ||||| ||||||||||| || | Sbjct 6097 AAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTC 6156 Query 6633 CGCCGCGGATGCTGGCGCGCACGTAGTCGTACATCTCGTGCGAGGGGGCCAGCAG 6687 | || | |||||| | | || | || || || ||||| || |||||||| || Sbjct 6157 CCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113387351259026