Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_015225.1
Length=35499
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 457 2e-124
>seq4931
Length=27746
Score = 457 bits (506), Expect = 2e-124
Identities = 1266/1917 (66%), Gaps = 53/1917 (3%)
Strand=Plus/Plus
Query 18926 GCTCCAAACAGAGCTAATTACATTGGTTTTAGAGACAACTTTATTGGGTTAATGTATTAC 18985
|| |||||||| | ||||| || |||||||| || |||||||| |||||||||| |||
Sbjct 16142 GCGCCAAACAGGCCAAATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTAT 16201
Query 18986 AATAGTACTGGAAATATGGGCGTGGTGGCCGGGCAGGCTTCTCAGCTTAATGCGGTGGTG 19045
|| |||| | | ||| |||| || | ||||| || | || ||||||||||| || |
Sbjct 16202 AACAGTAATAGCAATTTGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATC 16261
Query 19046 GATTTGCAAGACAGAAACACAGAGTTGTCTTATCAGCTGATGCTGGATTCCATTGGGGAT 19105
|| | ||||||||||| ||||| ||||| |||||||| ||| | ||| | |||
Sbjct 16262 GACCTTCAAGACAGAAATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGAT 16321
Query 19106 CGCAGTCGGTACTTTTCCATGTGGAACCAGGCTGTGGACAGCTACGACCCTGATGTAAGA 19165
| | ||| || | | ||||||| || || ||||| || || || || || ||
Sbjct 16322 AGAACTCGATATTACAGCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGA 16381
Query 19166 ATTATTGAAAATCACGGGGTAGAGGATGAACTGCCAAACTACTGCTTTCCCTTGGGAGGA 19225
|| || || ||| || ||||| || ||||| ||||| || |||||||| || |||
Sbjct 16382 ATCATAGACAATATTGGAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGA 16441
Query 19226 ATGGCAGTAACTGATACATATTCAGCT----ATAAAAACAGATAATGGAAACACCAACTG 19281
| | |||| ||| | ||| || |||| || || | || || |||
Sbjct 16442 TGTTCTCCTATTGAT---TATACTGCTGTTAATCAAAATGGACAA-GCAATCAATAACAA 16497
Query 19282 GA--CCTCAGATAGTACTTTTGCCGACAGAAATGAAATTGGCTCAGGAAACATGTTCGCC 19339
| ||| | || ||| | | || || ||||| | | | ||| |
Sbjct 16498 TAACCCTGCGCAGGTTCTTATA--GGCA--AAGGAAAT--GTTGA------ATG-----C 16540
Query 19340 ATGGAAATTAACCTGCAGGCCAACCTCTGGCGCAGCTTCCTCTACTCCAACATCGGGCTC 19399
|||||||| ||| | ||||||||| ||| | || || || || || |||| |||
Sbjct 16541 ATGGAAATCAACATAGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTG 16600
Query 19400 TACCTGCCAGACAGCCTCAAGTACACCCCCGACAACATTACCCTGCCCACCAACAAGAAC 19459
|| ||||| || | | | || ||| |||| || | |||| || || |
Sbjct 16601 TATCTGCCCGATAACTTTAAAACCACTCCCGCAAATGTGGTATTGCCG-----CAGGATC 16655
Query 19460 AGC-----TACGATTACATGAACGGTCGCGTTACGCCCCCCGGGCTCATTGACACCTACG 19514
||| || | ||||||||| |||| || | || || || | || ||
Sbjct 16656 AGCGGCTATATGCTTACATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGATTATA 16715
Query 19515 TCAATATTGGCGCGCGGTGGTCCCCCGACGTCATGGATAACATTAATCCCTTTAACCACC 19574
|||| || || | ||||||| || || ||||| | ||||||| ||||| || |
Sbjct 16716 TCAACATAGGAACCAGGTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATC 16775
Query 19575 ACCGCAATGCGGGCCTGCGCTACCGTTCCATGTTGTTGGGCAACGGCCGTTACGTGCCCT 19634
|| | ||| | || || | ||| | || | | || || || || || || | |||
Sbjct 16776 ACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCT 16835
Query 19635 TCCACATCCAGGTGCCCCAAAAGTTTTTTGCCATTAAAAACCTCTTGCTCCTCCCGGGCT 19694
| || || ||||| || |||||||||||||| |||||| | | || || ||||| |
Sbjct 16836 TTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGAT 16895
Query 19695 CCTACACCTACGAGTGGAACTTCCGCAAGGACGTGAACATGATTTTGCAAAGCACGCTAG 19754
| |||| ||||| ||| || | || || || |||||||||||||| || || || |
Sbjct 16896 CGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTG 16955
Query 19755 GTAACGATCTGCGGGTGGACGGGGCCACCATTCGCTTTGACAGCATTAACCTCTACGCCA 19814
| || |||||| ||| |||||| || | | ||||||||||||| ||| | || |
Sbjct 16956 GCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTA 17015
Query 19815 ACTTTTTTCCCATGGCGCACAACACCGCTTCCACCCTGGAAGCCATGCTGCGCAACGACA 19874
|| ||||| ||| | || ||||| ||||| || |||||| | ||||| ||||| ||
Sbjct 17016 CTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGG 17075
Query 19875 CCAACGACCAGTCCTTTAACGACTACCTCTGCGCGGCCAACATGCTCTACCCCATTCCCG 19934
||||| |||||||| |||||| || | | | |||||||| || | |||||
Sbjct 17076 TTAACGATCAGTCCTTCGGCGACTATCTTTCCAGCGTTAACATGCTTTATGCTATTCCTC 17135
Query 19935 CCAATGCCACCAGCGTGCCCATCTCCATCCCCTCCCGTAACTGGGCCGCTTTTCGAGGGT 19994
| || || | ||||| ||||| || || | | || ||||| || ||| |||| |
Sbjct 17136 CGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTT 17195
Query 19995 GGAGCTTTACCCGTCTGAAAACCA-AAGAAACCCCCGCCCTGGGTTCTGGTTTCGATCCC 20053
|| ||||| | || ||||| | | ||||| || || | || |||| || || ||
Sbjct 17196 GGGCATTTACTAGACT-AAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCA 17254
Query 20054 TACTTTGTGTACTCGGGCACCATTCCCTATTTGGATGGCACTTTTTACCTTAAC-CACAC 20112
|||||| |||||||||| | || || |||| ||||| || ||||| ||| | |||||
Sbjct 17255 TACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGCGACCTTTTA-TTTATCTCACAC 17313
Query 20113 CTTTAAAAAGGTGTCCATCATGTTTGATTCCTCCGTTAGCTGGCCGGGCAACGATCGCCT 20172
| | ||||||| |||| ||||||||| || || || ||||| || || || | ||
Sbjct 17314 TATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACT 17373
Query 20173 GCTCACGCCCAACGAGTTTGAAATTAAACGTTCGGTGGACGGGGAAGGCTACAACGTGGC 20232
| | || || || ||| | || ||| | |||||||| ||||||||| ||| |
Sbjct 17374 TTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTC 17433
Query 20233 CCAGTGTAACATGACCAAGGACTGGTTTTTAATTCAGATGCTAAGCCACTACAACATTGG 20292
||| | | || || ||||| |||| | | ||||| ||||| |||||||| || ||
Sbjct 17434 TCAGAGCATAATTACTAAGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGG 17493
Query 20293 TTACCAGGGCTTTTACGTGCCTGAAGGATACAAGGACAGAATGTACTCCTTTTTTAGAAA 20352
||||| || ||| || | || || || || || ||| |||| |||||||| |||||
Sbjct 17494 ATACCAAGGTTTTCACCTACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAA 17553
Query 20353 CTTCCAGCCCATGAGTCGGCAGGTGGTGGACACGGTTAACTATGCCGACTA-CAAAGAGG 20411
|| | |||||| || | || || ||||| | | ||| | | || ||| |
Sbjct 17554 TTTTGAACCCATGTGTAGACAAGTTGTGGATCCTGGTAAGACGGAAAAATATCAACCCGT 17613
Query 20412 TGAATTTACCTTACCAGCACAACAACTCAGGCTTCGTGGGTTACAT--GGGCCCCACCAT 20469
|| ||| || ||||| || || ||||| || | ||| || |||
Sbjct 17614 TGCTCTTA-AATATCAGCATAATAATTCAGGTTT--TAAAAACCATTATGGACCCTTTGG 17670
Query 20470 GCGGGAGGGCCAGGCCTACCCGGCCAACTACCCCTACCCCCTCATTGG-GCCCACCGCCG 20528
||| | ||||| | || || |||| || | ||| ||||| || | || || |
Sbjct 17671 GCGACAAGGCCATCCTTATCCCTGTAACTGGCCTTTCCCGCTCATCGGAGAACA-GGCAG 17729
Query 20529 TGCCCAGCCTCACGCAGAAAAAGTTCCTCTGCGACCGCGTTATGTGGCGCATCCCGTTTT 20588
| | | || |||| ||| || | || ||| | ||||| | || ||||| |
Sbjct 17730 GTAAAACCATTACTCAGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCT 17789
Query 20589 CCAGCAACTTCATGTCCATGGGGGCGCTCACGGACCTGGGCCAGAACATGCTCTACGCCA 20648
|| |||||| ||||||||||| | || || || ||||| || || |||| || || |
Sbjct 17790 CCTCCAACTTTATGTCCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAA 17849
Query 20649 ACTCGGCGCACGCGCTCGACATGACCTTCGAGGTGGACCCCATGGATGAGCCCACCCTTC 20708
| || || || || | |||||||| |||| || || | ||||| || || || ||
Sbjct 17850 ATTCAGCTCATGCTTTAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACTTATC 17909
Query 20709 TCTATG-TTCTGTTCGAAGTTTTCGACGTCGTGC-GCATCCACCAGCCGCACCGCGGCGT 20766
|| ||| | || || ||||| || ||| | |||| | | || ||||| || || || ||
Sbjct 17910 TC-ATGATGCTATTTGAAGTATTTGACAT-GTGCAGAGTGCATCAGCCTCAACGAGGTGT 17967
Query 20767 CATCGAAGCCGTCTACCTGCGCACGCCCTTCTCGGCCGGCAACGCCACCACCTAAAT 20823
||| |||| | || || | || ||||| ||||| || |||||| | || |||||
Sbjct 17968 CATAGAAGTTATTTATCTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAAAT 18024
Score = 93.3 bits (102), Expect = 1e-14
Identities = 136/190 (72%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 18068 AAGATGGCCACCCCCTCCATGATGCCCCAGTGGTCGTACATGCACATCGCCGGTCAGGAC 18127
||||||||||| ||||| ||| | || || ||||| ||| | || ||||| || || ||
Sbjct 15311 AAGATGGCCACTCCCTCGATGCTCCCGCAATGGTCTTACTTACATATCGCAGGACAAGAT 15370
Query 18128 GCCTCGGAGTACCTGAGCCCCGGCCTGGTG-CAGTTCGCGCGGGCCACGGACACGTACTT 18186
|| || || || | | | || || | ||| || || || | || || || ||||||||
Sbjct 15371 GCTTCAGAATA-TTTATCTCCTGCGTTGTGTCAATTTGCAAGCGCAACCGAAACGTACTT 15429
Query 18187 TAGCCTGGGTAACAAGTTTCGCAACCCCACGGTGGCGCCGACCCACGACGTGACCACGGA 18246
| ||| | | || ||| | || || ||||| |||||||| ||||| || || |||||
Sbjct 15430 TTCCCTAAGCGATAAATTTAGAAATCCGACGGTTGCGCCGACACACGATGTAACTACGGA 15489
Query 18247 CCGTTCGCAG 18256
| ||||||
Sbjct 15490 AAGATCGCAG 15499
Score = 82.4 bits (90), Expect = 2e-11
Identities = 123/175 (70%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 6513 AGGGGTTGAGCGGCGGCCCCCAGGGCATGGGGTGGGTGAGGGCCGAGGCGTACATGCCGC 6572
|||| || || || || || |||||||||| || || | || ||| ||||| |||
Sbjct 6037 AGGGATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGG 6096
Query 6573 AGATGTCGTAGACGTAGAGGGGCTCCTCGAGGACGCCGATGTAGGTGGGGTAGCAGCGGC 6632
| || || || || || | || ||||| | || || ||||| ||||||||||| || |
Sbjct 6097 AAATATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTC 6156
Query 6633 CGCCGCGGATGCTGGCGCGCACGTAGTCGTACATCTCGTGCGAGGGGGCCAGCAG 6687
| || | |||||| | | || | || || || ||||| || |||||||| ||
Sbjct 6157 CCCCTCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAG 6211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113387351259026
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