Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq147 149 1e-30 seq66 131 4e-25 seq36 125 2e-23 seq84 120 7e-22 seq91 114 3e-20 seq74 102 2e-16 seq1 95.1 3e-14 seq61 91.5 3e-13 seq18 89.7 1e-12 seq2 87.8 4e-12 >seq147 Length=2532799 Score = 149 bits (164), Expect = 1e-30 Identities = 168/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | | ||| ||||| || ||||||||||| || || ||||| || | |||||| Sbjct 2384169 CTGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTG 2384110 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| ||||||||||| || | || ||||| ||||| ||||| Sbjct 2384109 CGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCC 2384050 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 ||||| || || || || ||| || ||||||||||| || ||| ||||| || Sbjct 2384049 TCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCCACCTCC 2383993 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| ||||| || |||| || || ||||| | ||||| Sbjct 2383992 AGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949 Score = 134 bits (148), Expect = 3e-26 Identities = 166/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| || |||||||| || || || ||||| || | |||||| Sbjct 2383942 TCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 2383883 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| ||||||||||| || | || ||||| ||||| ||||| Sbjct 2383882 GCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 2383823 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||| || || || || ||| || ||||||||||| || ||| || || || Sbjct 2383822 CTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCAACCTC 2383766 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | ||||| || ||||| || || ||||| | |||||| Sbjct 2383765 TAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATT 2383720 >seq66 Length=5789316 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | |||||||| Sbjct 2649876 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 2649817 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| ||||| || Sbjct 2649816 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 2649757 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 2649756 ATCTTAGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 2649700 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 2649699 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668 Score = 111 bits (122), Expect = 3e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | |||||||| Sbjct 2649648 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 2649589 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| | | || || || || || ||||| || ||||| || Sbjct 2649588 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCCTGG 2649529 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| ||||| || | ||| | ||| Sbjct 2649528 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAAGGTGATGGTC 2649472 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| || || || || | |||||| Sbjct 2649471 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 2649439 >seq36 Length=17049061 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | | ||| || |||| || |||||||| || || ||||| || | |||||| Sbjct 7362815 CTGAGACGGAGAACCAGACGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTG 7362874 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||||| | |||||| ||||||||||| || | || ||||| ||||||||||| Sbjct 7362875 TGGCCATCTTCCACCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCC 7362934 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 ||||| || || || || ||| || ||||||||||| || ||||| || ||| Sbjct 7362935 TCTTTATCCTGGATCTTGGCCTTCACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGG 7362994 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| ||||| || |||| || || | ||| | |||||| Sbjct 7362995 ATAATGGTCTTGCCGGTCAGGGTCTTCATGAAGATCTGCATT 7363036 >seq84 Length=7487594 Score = 120 bits (132), Expect = 7e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||||||||||||| |||||||| ||| |||| | | ||| | Sbjct 757427 AGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAATCAGATAAAGTACAT 757486 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||| | ||||||||||| || ||| | |||| ||| || || |||||||| ||||| Sbjct 757487 CCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTCC 757546 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 || || || || || ||| || || || || || ||||| Sbjct 757547 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGA 757587 >seq91 Length=4965619 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||||||||||||| ||||| || ||||| || | | |||| Sbjct 1585558 AGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGT 1585617 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||||| |||| ||| || || || | || ||||| Sbjct 1585618 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCC 1585677 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || ||||| ||| || | || || Sbjct 1585678 TTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTG 1585737 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| | ||| | ||||| Sbjct 1585738 ATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775 >seq74 Length=6199102 Score = 102 bits (112), Expect = 2e-16 Identities = 155/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || |||||||||||||||| |||||||| |||| || | || ||| | || Sbjct 2522992 TCTCAACACTGGGTGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGTAA-AGTACATCC 2523050 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| ||| |||||||||| ||||| || | ||| || || | |||||| ||||| || Sbjct 2523051 ATCTTCCAGCCGCTTACCTGCAAAGATCAGGCTTTGCTGATCAGAAGGAATTCCTTCCTT 2523110 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 | | || || | | || || || || || ||| | || ||||| || || | Sbjct 2523111 AGCCCGGATCTTGGCCATTACATTTTCTATAGTATCCAAGGGCTCAACTTCCAGTGTGAT 2523170 Query 195105 CGTCTTTCCTGTCAAAGTTTTTAC-GAACACTTGCAT 195140 ||||| ||| | || | |||| | ||| | ||||| Sbjct 2523171 GGTCTTCCCTAT-AAGGATTTTGCTGAAAATCTGCAT 2523206 >seq1 Length=68039765 Score = 95.1 bits (104), Expect = 3e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||| || || || |||||||||||||| ||||| || ||||| || | || | || Sbjct 38753662 TCTTAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTACGTCC 38753603 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 || ||| ||||||||||| | ||||| |||| ||| || || |||||||| ||||| || Sbjct 38753602 ATTTTCCAGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 38753543 Query 195045 GTCTTGAATTTT 195056 || ||||| || Sbjct 38753542 ATCCTGAATCTT 38753531 >seq61 Length=10587387 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| | || |||| ||||| ||| |||||||| ||||| || | | ||| | Sbjct 1945084 AGTCTCAATTCTAGATGAAAAGTGGGCTCCTTTTGAATGTTGTAGTCAGATAAAGTACAT 1945143 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||| | | || || || || |||||||| ||||| Sbjct 1945144 CCATCTTCCAGCTGCTTACCAGCAAAGGTCACTC--TGCTGATCAGGAGGAATTCCTTCC 1945201 Query 195043 TTGTCTTGAATTTT 195056 || || || || || Sbjct 1945202 TTATCCTGGATCTT 1945215 >seq18 Length=20386103 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||| || |||||||| ||||| | | | ||| | ||||| | |||||| Sbjct 5141522 TGAAGAGTGGAGTCCTTTTGAATGTTGTAGACAGATAAAGTACATTCATCTCCCAGCTGC 5141463 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || ||||| |||| ||| || || |||||||||||||| Sbjct 5141462 TTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATGCCTTC 5141419 >seq2 Length=36660411 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 194924 GTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCC 194983 ||||||| | || |||||| ||||||| |||| ||||||||| | | | | | | Sbjct 30261534 GTCTCAACAGTAGATGAAGAATGGACTCCTTTTTAATATTGTAGGTAGATAAACTACATC 30261475 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 ||||||| ||||||||||| || | ||||||| ||||| || ||||| || ||||| | Sbjct 30261474 CATCTTCCAGCTGCTTACCAGCAACCATAAGTCTTTGTTAATCAGGAGGCATTCCTTCCT 30261415 Query 195044 TGTCTTGAATTTT 195056 | || || || || Sbjct 30261414 TATCCTGGATCTT 30261402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108554866315031