Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq147 149 1e-30
seq66 131 4e-25
seq36 125 2e-23
seq84 120 7e-22
seq91 114 3e-20
seq74 102 2e-16
seq1 95.1 3e-14
seq61 91.5 3e-13
seq18 89.7 1e-12
seq2 87.8 4e-12
>seq147
Length=2532799
Score = 149 bits (164), Expect = 1e-30
Identities = 168/224 (75%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
||||| | | ||| ||||| || ||||||||||| || || ||||| || | ||||||
Sbjct 2384169 CTGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTG 2384110
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| |||||||| |||||||| ||||||||||| || | || ||||| ||||| |||||
Sbjct 2384109 CGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCC 2384050
Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096
||||| || || || || ||| || ||||||||||| || ||| ||||| ||
Sbjct 2384049 TCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCCACCTCC 2383993
Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||||| ||||| || |||| || || ||||| | |||||
Sbjct 2383992 AGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 2383949
Score = 134 bits (148), Expect = 3e-26
Identities = 166/226 (73%), Gaps = 6/226 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || || ||||| || |||||||| || || || ||||| || | ||||||
Sbjct 2383942 TCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 2383883
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| |||||||| |||||||| ||||||||||| || | || ||||| ||||| |||||
Sbjct 2383882 GCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 2383823
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
||||| || || || || ||| || ||||||||||| || ||| || || ||
Sbjct 2383822 CTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCAACCTC 2383766
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || | ||||| || ||||| || || ||||| | ||||||
Sbjct 2383765 TAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATT 2383720
>seq66
Length=5789316
Score = 131 bits (144), Expect = 4e-25
Identities = 157/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||||||||| || || || ||||| || | || || | ||||||||
Sbjct 2649876 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 2649817
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || ||||| || ||||||||||| ||||| ||
Sbjct 2649816 AGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 2649757
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || |||||| ||||| |||||||| ||| ||||| || ||||| | |||
Sbjct 2649756 ATCTTAGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 2649700
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || ||||| | |||||
Sbjct 2649699 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668
Score = 111 bits (122), Expect = 3e-19
Identities = 153/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||||||||| || || || ||||| || | || || | ||||||||
Sbjct 2649648 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 2649589
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| ||||| ||||| | | || || || || || ||||| || ||||| ||
Sbjct 2649588 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCCTGG 2649529
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || |||||| ||||| |||||||| ||| ||||| || | ||| | |||
Sbjct 2649528 ATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAAGGTGATGGTC 2649472
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || |||| || || || || | ||||||
Sbjct 2649471 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 2649439
>seq36
Length=17049061
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
||||| | | ||| || |||| || |||||||| || || ||||| || | ||||||
Sbjct 7362815 CTGAGACGGAGAACCAGACGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTG 7362874
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
|||||||| | |||||| ||||||||||| || | || ||||| |||||||||||
Sbjct 7362875 TGGCCATCTTCCACCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCC 7362934
Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099
||||| || || || || ||| || ||||||||||| || ||||| || |||
Sbjct 7362935 TCTTTATCCTGGATCTTGGCCTTCACTTTCTCAATGGTATCAATGGGCTCCACCTCCAGG 7362994
Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
||| ||||| || |||| || || | ||| | ||||||
Sbjct 7362995 ATAATGGTCTTGCCGGTCAGGGTCTTCATGAAGATCTGCATT 7363036
>seq84
Length=7487594
Score = 120 bits (132), Expect = 7e-22
Identities = 123/161 (76%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| || || |||||||||||||| |||||||| ||| |||| | | ||| |
Sbjct 757427 AGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGAATGTTGCAATCAGATAAAGTACAT 757486
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||| | ||||||||||| || ||| | |||| ||| || || |||||||| |||||
Sbjct 757487 CCATCTCCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTCC 757546
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083
|| || || || || ||| || || || || || |||||
Sbjct 757547 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGA 757587
>seq91
Length=4965619
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| || || |||||||||||||| ||||| || ||||| || | | ||||
Sbjct 1585558 AGTCTCAATACTAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGATAAAGTTTGT 1585617
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||||||||| || ||||| |||| ||| || || || | || |||||
Sbjct 1585618 CCATCTTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCC 1585677
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| || || || || || ||||| ||| || | || ||
Sbjct 1585678 TTATCCTGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTG 1585737
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || || || | ||||| | ||| | |||||
Sbjct 1585738 ATGGTTTTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775
>seq74
Length=6199102
Score = 102 bits (112), Expect = 2e-16
Identities = 155/217 (71%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984
|||||| || |||||||||||||||| |||||||| |||| || | || ||| | ||
Sbjct 2522992 TCTCAACACTGGGTGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGTAA-AGTACATCC 2523050
Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044
|||||| ||| |||||||||| ||||| || | ||| || || | |||||| ||||| ||
Sbjct 2523051 ATCTTCCAGCCGCTTACCTGCAAAGATCAGGCTTTGCTGATCAGAAGGAATTCCTTCCTT 2523110
Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104
| | || || | | || || || || || ||| | || ||||| || || |
Sbjct 2523111 AGCCCGGATCTTGGCCATTACATTTTCTATAGTATCCAAGGGCTCAACTTCCAGTGTGAT 2523170
Query 195105 CGTCTTTCCTGTCAAAGTTTTTAC-GAACACTTGCAT 195140
||||| ||| | || | |||| | ||| | |||||
Sbjct 2523171 GGTCTTCCCTAT-AAGGATTTTGCTGAAAATCTGCAT 2523206
>seq1
Length=68039765
Score = 95.1 bits (104), Expect = 3e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984
||| || || || |||||||||||||| ||||| || ||||| || | || | ||
Sbjct 38753662 TCTTAACACTAGATGAAGAGTGGACTCCTTTTGCATGTTGTAGTCAGATCAGGTACGTCC 38753603
Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044
|| ||| ||||||||||| | ||||| |||| ||| || || |||||||| ||||| ||
Sbjct 38753602 ATTTTCCAGCTGCTTACCATCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 38753543
Query 195045 GTCTTGAATTTT 195056
|| ||||| ||
Sbjct 38753542 ATCCTGAATCTT 38753531
>seq61
Length=10587387
Score = 91.5 bits (100), Expect = 3e-13
Identities = 101/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| | || |||| ||||| ||| |||||||| ||||| || | | ||| |
Sbjct 1945084 AGTCTCAATTCTAGATGAAAAGTGGGCTCCTTTTGAATGTTGTAGTCAGATAAAGTACAT 1945143
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||||||||| || ||| | | || || || || |||||||| |||||
Sbjct 1945144 CCATCTTCCAGCTGCTTACCAGCAAAGGTCACTC--TGCTGATCAGGAGGAATTCCTTCC 1945201
Query 195043 TTGTCTTGAATTTT 195056
|| || || || ||
Sbjct 1945202 TTATCCTGGATCTT 1945215
>seq18
Length=20386103
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
||||||||||| || |||||||| ||||| | | | ||| | ||||| | ||||||
Sbjct 5141522 TGAAGAGTGGAGTCCTTTTGAATGTTGTAGACAGATAAAGTACATTCATCTCCCAGCTGC 5141463
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
||||| || ||||| |||| ||| || || ||||||||||||||
Sbjct 5141462 TTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATGCCTTC 5141419
>seq2
Length=36660411
Score = 87.8 bits (96), Expect = 4e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 194924 GTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCC 194983
||||||| | || |||||| ||||||| |||| ||||||||| | | | | | |
Sbjct 30261534 GTCTCAACAGTAGATGAAGAATGGACTCCTTTTTAATATTGTAGGTAGATAAACTACATC 30261475
Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043
||||||| ||||||||||| || | ||||||| ||||| || ||||| || ||||| |
Sbjct 30261474 CATCTTCCAGCTGCTTACCAGCAACCATAAGTCTTTGTTAATCAGGAGGCATTCCTTCCT 30261415
Query 195044 TGTCTTGAATTTT 195056
| || || || ||
Sbjct 30261414 TATCCTGGATCTT 30261402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108554866315031
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