Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq66 111 1e-19 seq147 95.1 8e-15 >seq66 Length=5789316 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 2649894 CCTCCCCTCAAACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649835 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 2649834 AGGGTACGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2649775 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| ||||| || || || | |||| || ||| | Sbjct 2649774 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 2649717 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || || |||||||| ||||||||||| Sbjct 2649716 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 2649648 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 2649589 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | | ||||| || | || | ||||||||||| Sbjct 2649588 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCCTGG 2649529 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 2649528 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCT 2649471 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||||||||||||||| Sbjct 2649470 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2649440 >seq147 Length=2532799 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||| | ||| |||||||| ||||| ||||| ||||| | || |||| || Sbjct 2384158 AACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 2384099 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || || || || || | |||||||| | || | ||||| || || Sbjct 2384098 CAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTG 2384039 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| || || || || || | |||| || ||| || || | ||| ||||| Sbjct 2384038 GATCTTGGCCTTCAC--ATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTC 2383981 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || |||||||| |||||||||||| Sbjct 2383980 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 2383948 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||| ||| | ||| || ||||| ||||| ||||| ||| Sbjct 2383947 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 2383888 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || || || || || | |||||||| | || Sbjct 2383887 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 2383828 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||| || || ||||| || || || || || | |||| || ||||| Sbjct 2383827 ATGCCCTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCACTGGGCTCAA 2383770 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||| || || || | |||||||| ||||||||||| Sbjct 2383769 CCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2383721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324375665720904