Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq66 111 1e-19
seq147 95.1 8e-15
>seq66
Length=5789316
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||||||||| | | |||| ||| | ||| || ||||| ||||| ||||| ||
Sbjct 2649894 CCTCCCCTCAAACGGAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2649835
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || |||| |||||||| || || ||||| || || | |||||||| | ||
Sbjct 2649834 AGGGTACGGCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2649775
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932
| || |||||||| ||||| ||||| || || || | |||| || ||| |
Sbjct 2649774 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 2649717
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || | ||| ||||| || || || || |||||||| |||||||||||
Sbjct 2649716 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2649668
Score = 100 bits (110), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| |||
Sbjct 2649648 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 2649589
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || | | ||||| || | || | |||||||||||
Sbjct 2649588 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGATCAGGTGGTATGCCCTCCTTGTCCTGG 2649529
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||||| || || || | |||| || ||| || || | ||| ||||| |
Sbjct 2649528 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTCT 2649471
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || || ||||||||||||||||||||
Sbjct 2649470 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2649440
>seq147
Length=2532799
Score = 95.1 bits (104), Expect = 8e-15
Identities = 150/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||| ||| | ||| |||||||| ||||| ||||| ||||| | || |||| ||
Sbjct 2384158 AACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 2384099
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|||||| || || || || || || | |||||||| | || | ||||| || ||
Sbjct 2384098 CAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCTTTATCCTG 2384039
Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949
||||| || || || || || | |||| || ||| || || | ||| |||||
Sbjct 2384038 GATCTTGGCCTTCAC--ATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTAATGGTC 2383981
Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || || |||||||| ||||||||||||
Sbjct 2383980 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 2383948
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| || |||| | || |||| ||| | ||| || ||||| ||||| ||||| |||
Sbjct 2383947 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 2383888
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | || |||| |||||||| || || || || || || | |||||||| | ||
Sbjct 2383887 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 2383828
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932
| ||||| || || ||||| || || || || || | |||| || |||||
Sbjct 2383827 ATGCCCTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCACTGGGCTCAA 2383770
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || | || ||||| || || || | |||||||| |||||||||||
Sbjct 2383769 CCTCTAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2383721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324375665720904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |