Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_015455.1
Length=26284
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 116 6e-22
>seq4931
Length=27746
Score = 116 bits (128), Expect = 6e-22
Identities = 529/826 (64%), Gaps = 16/826 (2%)
Strand=Plus/Plus
Query 15159 AATCCTTTCAACCATCATAAGAATAGAGGTCTACAATATAGGAGCCAAATATTAGGGAAT 15218
||||| || || ||||| | |||| ||| | || ||| || ||||||| |||
Sbjct 16760 AATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAAT 16819
Query 15219 GGTAGGGTATG-TGATTTTCATATTCAAGTTCCCCAGAAATTCTTTGCTATTAAAAACTT 15277
||| | |||| | ||||||||||| ||||| || || || ||||| |||||| ||
Sbjct 16820 GGTCGC-TATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTT 16878
Query 15278 GTTGCTATTACCCGGTACCTATACTTATGAATGGTGGTTCAGGAAAGATCCCAACTTGGT 15337
| | || |||| || | || | ||| ||||||| || || |||||| ||| || |
Sbjct 16879 GCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGAT 16938
Query 15338 GTTGCAGTCTACACTAGGGAATGATCTTAGGAAGGACGGAGCTGTAATAGAGTATACTAA 15397
|||||| ||| || || |||||||| ||| |||||||||| | || | | |
Sbjct 16939 TTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAG 16998
Query 15398 TATTAATTTATATGCTAGTTTTTTCCCAATG---GATCACGCAACGTGTAGTGAGTTAAT 15454
|||| ||| ||||| ||| || || ||| || || | | | || | | ||
Sbjct 16999 CATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTG-GAAA 17057
Query 15455 CTTGATGTTGCGTAATGACCAAAATGATCAGACTTTTATGGACTATTTGGGTGCAAAG-- 15512
|| ||| | || ||||| || |||||| | || |||||| | | || |
Sbjct 17058 CT--ATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCT--TTCCAGCGTT 17113
Query 15513 AACAACTTATATGTTGTTCCGCCTGATGTATCTAATTTGCAAATTGAGATACCATCTAGA 15572
|||| | |||| | |||| || || | | | ||| || || ||| | ||
Sbjct 17114 AACATGCTTTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGG 17173
Query 15573 TCATGGACAGCATTCAGAGGATGGTCATTTAACAGAATGAAA-GCCAGTGAAACTCCAGC 15631
||| | || || ||||| ||| |||||| ||| | ||| ||| ||||| ||| |
Sbjct 17174 AATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAG-GAAACACCAAC 17232
Query 15632 AGTATGGTCAACATATGATGTTAACTTTCATTATAGCGGTTCTATACCTTATCTTGATTC 15691
| | || ||| ||| ||||| || || || || || ||| ||| |
Sbjct 17233 CATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGC 17292
Query 15692 TACATTTTACCTCTCACACACTTTCAATTCTTTAGCAATTACTTTTGATTCAGCAGTTCC 15751
|| ||||| | || |||||| ||| | || || |||||||| ||||
Sbjct 17293 GACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAG 17352
Query 15752 TTGGCCTGGAAATGACAGGTTGCTGTTGCCTAATTTCTTTGAAATAAAGAGGAATTATGA 15811
|||||||||||||||||| | | | |||||| ||| | ||||| || | ||
Sbjct 17353 TTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGA 17412
Query 15812 TTCAGAGGGCTATTGCACCAGTCAGTCTAACATGACTAAAGATTGGTGGTTAATTCAAAT 15871
| || |||||| |||| |||| | || ||||| ||||||| | ||||||||
Sbjct 17413 CGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAAT 17472
Query 15872 GTCAGCAAATTACAATCAGGGTTATCACGGTTAT-AGCTATCCAGCTGATAAAACTTATA 15930
| || | |||||| || || || |||| | | ||| ||| | ||| | | |||
Sbjct 17473 GCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCA-CAGATTATAAAGATA 17531
Query 15931 GACAGTATGATTTTATTAGTAATTTTGATCCTATGTCTATTCAAGT 15976
|| |||| ||| | || |||||||| || |||| || |||||
Sbjct 17532 GATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGT 17577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 83927088535173
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |