Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_015455.1 Length=26284 Score E Sequences producing significant alignments: (Bits) Value seq4931 116 6e-22 >seq4931 Length=27746 Score = 116 bits (128), Expect = 6e-22 Identities = 529/826 (64%), Gaps = 16/826 (2%) Strand=Plus/Plus Query 15159 AATCCTTTCAACCATCATAAGAATAGAGGTCTACAATATAGGAGCCAAATATTAGGGAAT 15218 ||||| || || ||||| | |||| ||| | || ||| || ||||||| ||| Sbjct 16760 AATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGGTCTCAGCTATTAGGAAAT 16819 Query 15219 GGTAGGGTATG-TGATTTTCATATTCAAGTTCCCCAGAAATTCTTTGCTATTAAAAACTT 15277 ||| | |||| | ||||||||||| ||||| || || || ||||| |||||| || Sbjct 16820 GGTCGC-TATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTTTTTGCACTTAAAAGTTT 16878 Query 15278 GTTGCTATTACCCGGTACCTATACTTATGAATGGTGGTTCAGGAAAGATCCCAACTTGGT 15337 | | || |||| || | || | ||| ||||||| || || |||||| ||| || | Sbjct 16879 GCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGAAAAGATGTAAACATGAT 16938 Query 15338 GTTGCAGTCTACACTAGGGAATGATCTTAGGAAGGACGGAGCTGTAATAGAGTATACTAA 15397 |||||| ||| || || |||||||| ||| |||||||||| | || | | | Sbjct 16939 TTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCGTCAGTAACATTTGACAG 16998 Query 15398 TATTAATTTATATGCTAGTTTTTTCCCAATG---GATCACGCAACGTGTAGTGAGTTAAT 15454 |||| ||| ||||| ||| || || ||| || || | | | || | | || Sbjct 16999 CATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCATAACACTGCTTCTACTCTG-GAAA 17057 Query 15455 CTTGATGTTGCGTAATGACCAAAATGATCAGACTTTTATGGACTATTTGGGTGCAAAG-- 15512 || ||| | || ||||| || |||||| | || |||||| | | || | Sbjct 17058 CT--ATGCTTCGCAATGAGGTTAACGATCAGTCCTTCGGCGACTATCT--TTCCAGCGTT 17113 Query 15513 AACAACTTATATGTTGTTCCGCCTGATGTATCTAATTTGCAAATTGAGATACCATCTAGA 15572 |||| | |||| | |||| || || | | | ||| || || ||| | || Sbjct 17114 AACATGCTTTATGCTATTCCTCCGCATCAAACAACAGTGCCTATCTCTATTCCAGCAAGG 17173 Query 15573 TCATGGACAGCATTCAGAGGATGGTCATTTAACAGAATGAAA-GCCAGTGAAACTCCAGC 15631 ||| | || || ||||| ||| |||||| ||| | ||| ||| ||||| ||| | Sbjct 17174 AATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGACTAAAACAACAG-GAAACACCAAC 17232 Query 15632 AGTATGGTCAACATATGATGTTAACTTTCATTATAGCGGTTCTATACCTTATCTTGATTC 15691 | | || ||| ||| ||||| || || || || || ||| ||| | Sbjct 17233 CATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGGGCTCAATCCCGTATTGGGATGC 17292 Query 15692 TACATTTTACCTCTCACACACTTTCAATTCTTTAGCAATTACTTTTGATTCAGCAGTTCC 15751 || ||||| | || |||||| ||| | || || |||||||| |||| Sbjct 17293 GACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCATACAGTTTGATTCTTCAGTAAG 17352 Query 15752 TTGGCCTGGAAATGACAGGTTGCTGTTGCCTAATTTCTTTGAAATAAAGAGGAATTATGA 15811 |||||||||||||||||| | | | |||||| ||| | ||||| || | || Sbjct 17353 TTGGCCTGGAAATGACAGACTTTTAATACCTAATGAATTTCACATAAAAAGAGAGGTGGA 17412 Query 15812 TTCAGAGGGCTATTGCACCAGTCAGTCTAACATGACTAAAGATTGGTGGTTAATTCAAAT 15871 | || |||||| |||| |||| | || ||||| ||||||| | |||||||| Sbjct 17413 CGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTAAGGATTGGTATATGATTCAAAT 17472 Query 15872 GTCAGCAAATTACAATCAGGGTTATCACGGTTAT-AGCTATCCAGCTGATAAAACTTATA 15930 | || | |||||| || || || |||| | | ||| ||| | ||| | | ||| Sbjct 17473 GCTCGCTCACTACAATATCGGATACCAAGGTTTTCACCTACCCA-CAGATTATAAAGATA 17531 Query 15931 GACAGTATGATTTTATTAGTAATTTTGATCCTATGTCTATTCAAGT 15976 || |||| ||| | || |||||||| || |||| || ||||| Sbjct 17532 GATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTAGACAAGT 17577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83927088535173