Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq17 120 3e-22
seq22 102 9e-17
seq20 102 9e-17
>seq17
Length=26966924
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | |||||||| || ||||| || |||
Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||||||||||| |||||| |||||||| ||||| | ||||||||||| ||||| ||
Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGCC 9450883
Query 19105 ACTAGTCTTTCTCC 19118
|| | |||||| ||
Sbjct 9450882 ACCACTCTTTCCCC 9450869
>seq22
Length=17426531
Score = 102 bits (112), Expect = 9e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || |||| || ||||| ||||| ||||| || ||
Sbjct 1398048 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATGGAC 1398107
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| | || ||||||||||| || |||||||| | |||| | | |||
Sbjct 1398108 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGCAGGCTG 1398167
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 1398168 TTTCTTATACCATA 1398181
Score = 98.7 bits (108), Expect = 1e-15
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||||||||| | ||| ||| |||| |||| |||||| || |
Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| ||||| |||||||| || |||||||| || || ||||| | | || |
Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTT 47206
| || | || ||||| || || ||||||| ||||||
Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTT 1394476
>seq20
Length=25211774
Score = 102 bits (112), Expect = 9e-17
Identities = 109/142 (77%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTT 18673
|| ||| ||||||| | |||||||||||| || || | ||| ||||||||| | |
Sbjct 21306521 AAGTCAGCATCCAAGGTGAAAGAATTCTCTG--TTGGACTGGACATCACTCCCATTCTCT 21306578
Query 18674 GATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCA 18733
|||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| ||||
Sbjct 21306579 GATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCA 21306638
Query 18734 TAAAATCAAATGGATTTTTTAC 18755
| |||||||||||||||| |||
Sbjct 21306639 TGAAATCAAATGGATTTTCTAC 21306660
Score = 102 bits (112), Expect = 9e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||||||||| || || | ||||| ||||| || | |||||||| ||||||| || |
Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || || || || ||||||||||| || || || || || ||||| |
Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600
Query 19103 CAACTAGTCTTTCTCC 19118
| || | || ||||||
Sbjct 21308601 CTACAACTCGTTCTCC 21308616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561650730512520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |