Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq17 120 3e-22 seq22 102 9e-17 seq20 102 9e-17 >seq17 Length=26966924 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| || ||||| || ||| Sbjct 9451002 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTCTTCTTT 9450943 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| |||||||| ||||| | ||||||||||| ||||| || Sbjct 9450942 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAACTCCTTCTACTGCAGCAAAGGCC 9450883 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 9450882 ACCACTCTTTCCCC 9450869 >seq22 Length=17426531 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || ||||| ||||| ||||| || || Sbjct 1398048 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATGGAC 1398107 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | || ||||||||||| || |||||||| | |||| | | ||| Sbjct 1398108 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGCAGGCTG 1398167 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 1398168 TTTCTTATACCATA 1398181 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| |||| |||||| || | Sbjct 1394320 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCTGCAATATGGATGT 1394379 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| ||||| |||||||| || |||||||| || || ||||| | | || | Sbjct 1394380 TCAAAGACTGACTTTGATCAATGAAAGCACCTCTCTCGGCCGCCATCTTAAGAACAGTTT 1394439 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTT 47206 | || | || ||||| || || ||||||| |||||| Sbjct 1394440 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTT 1394476 >seq20 Length=25211774 Score = 102 bits (112), Expect = 9e-17 Identities = 109/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTT 18673 || ||| ||||||| | |||||||||||| || || | ||| ||||||||| | | Sbjct 21306521 AAGTCAGCATCCAAGGTGAAAGAATTCTCTG--TTGGACTGGACATCACTCCCATTCTCT 21306578 Query 18674 GATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCA 18733 |||| ||| | ||||| || |||||||| ||||| || || || | ||| ||| |||| Sbjct 21306579 GATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCA 21306638 Query 18734 TAAAATCAAATGGATTTTTTAC 18755 | |||||||||||||||| ||| Sbjct 21306639 TGAAATCAAATGGATTTTCTAC 21306660 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | ||||| ||||| || | |||||||| ||||||| || | Sbjct 21308481 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTGAGGCCAGGCATAAGTCCTCGCTTCT 21308540 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || || || || ||||||||||| || || || || || ||||| | Sbjct 21308541 TCAGCCAGAATATCGACGCGAAAGAACCAGAAAAGAAGATTCCCTCCACCGCGGCAAAGG 21308600 Query 19103 CAACTAGTCTTTCTCC 19118 | || | || |||||| Sbjct 21308601 CTACAACTCGTTCTCC 21308616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561650730512520