Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12]
65,193 sequences; 2,236,368,823 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq202 145 6e-29
seq10 116 3e-20
seq91 107 2e-17
seq55 105 5e-17
seq84 102 7e-16
seq147 93.3 3e-13
seq36 93.3 3e-13
seq148 89.7 4e-12
seq38 89.7 4e-12
>seq202
Length=1299801
Score = 145 bits (160), Expect = 6e-29
Identities = 366/551 (66%), Gaps = 8/551 (1%)
Strand=Plus/Plus
Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050
||| || || || || | || ||||| ||| ||||| || || | || |||| ||
Sbjct 1282569 AGCCATCGGCATCGACCTGGGTACCACCTATTCCTGTGTGGGGGTGTTCCAGCATGGCAA 1282628
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
|| || || || ||||| || || || ||| | || || || || || | |||||
Sbjct 1282629 GGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCCTTCAC 1282688
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167
|| || || | | |||| ||||| || || | || ||||| || || ||
Sbjct 1282689 CGACACCGAGCGGCTCATTGGAGATGCGGCTAAGAACCAGGTAGCCA-TG--AACCCGCA 1282745
Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227
|||||| | |||||||| |||||| | ||||| |||| ||||| ||| | ||| ||
Sbjct 1282746 GAATACTGTCTTTGATGCCAAACGTCTGATTGGCAGAAAATTTAACGATCCTGTTGTACA 1282805
Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287
| |||||||||| | |||||| || ||| | | |||| || || || | | |||
Sbjct 1282806 GTCAGATATGAAACTTTGGCCATTTCAAGTGATCAATGAAGGAGGGAAGCCCAA-AGTGA 1282864
Query 550288 AGCTA-CTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346
| | || || |||| ||| || | || || | || || || |||||
Sbjct 1282865 TGGTGTCTTATAAAGGGGAGAAGAAAGCTTTCTACCCTGAGGAGATCTCTTCAATGGTAC 1282924
Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406
| | || |||||| | || || |||||| | || || || || |||| || |
Sbjct 1282925 TGACCAAGATGAAAGAGACTGCAGAGGCTTTTTTGGGCCACACTGTCACCAATGCCGTGA 1282984
Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466
| || || ||||| ||||| |||||||| ||||| || || || || ||||| || |
Sbjct 1282985 TCACCGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTGTGA 1283044
Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526
| || || || ||||| || | || ||||||||||| ||||| ||||| |||| ||||
Sbjct 1283045 TCGCAGGCCTCAATGTGCTAAGAATCATCAATGAACCCACTGCAGCTGCCATTGCCTATG 1283104
Query 550527 GACTTGATAAA 550537
| | ||||||
Sbjct 1283105 GTTTAGATAAA 1283115
>seq10
Length=26250347
Score = 116 bits (128), Expect = 3e-20
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| || | ||||| |||||||| || || ||||| || || || || ||
Sbjct 23030752 GTTACAAATGCTGTGGTTACTGTCCCAGCATACTTCAACGACTCTCAGCGCCAGGCAACA 23030693
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| |||||||| || |||||||| | ||||||||||| || ||||||
Sbjct 23030692 AAAGATGCTGGAACCATTGCTGGTCTGAATGTTCTGAGAATTATCAATGAGCCAACTGCT 23030633
Query 550511 GCTGCACTTGCATATGG 550527
||||| |||| |||||
Sbjct 23030632 GCTGCTATTGCTTATGG 23030616
>seq91
Length=4965619
Score = 107 bits (118), Expect = 2e-17
Identities = 152/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 563265 TACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322
||| |||||||| || ||| ||||| || ||||| |||| || |||| | ||||
Sbjct 1585566 TACTAGATGAAGAGTGGACTCCTTTTGG--ATGTTGTAGTCAGATAAAGTTTGTCCATCT 1585623
Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382
|| || || || || ||||| || ||||||||||||||||| | |||||||| |||||
Sbjct 1585624 TCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCCTTATCC 1585683
Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTT 563442
|| || || ||||| || || ||||| | | | | | ||| || | |||
Sbjct 1585684 TGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTGATGGTT 1585743
Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| || ||||| ||||||| |||||| |||||
Sbjct 1585744 TTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775
>seq55
Length=8345910
Score = 105 bits (116), Expect = 5e-17
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| ||||||| | ||||||||||| ||||||||||| | ||||| ||||| ||
Sbjct 2142036 GTTACTCATGCAGTTGTCACTGTACCAGCCTATTTTAATGATGCCCAACGCCAAGCAACC 2141977
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503
|||||||||||| |||||||||||| ||||| | | || |||||||| ||
Sbjct 2141976 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 2141924
>seq84
Length=7487594
Score = 102 bits (112), Expect = 7e-16
Identities = 153/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 563265 TACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322
||| |||||||| || ||| |||| ||| ||| |||||| || ||| | | ||||
Sbjct 757435 TACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGCAATCAGATAAAGTACATCCATCT 757492
Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382
| || || || || ||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 757493 CCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 757552
Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTG-AGTACATTCGAGAGTAACAGT 563441
|| || || ||||| || || ||||| | | | ||||| ||| | | ||
Sbjct 757553 TGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACATT-GAGTATGATGGT 757611
Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||| || ||||| ||||| | |||||| | |||
Sbjct 757612 TTTCCCCGTAAGGGTTTTGATGAAAATCTTCAT 757644
>seq147
Length=2532799
Score = 93.3 bits (102), Expect = 3e-13
Identities = 159/226 (70%), Gaps = 6/226 (3%)
Strand=Plus/Minus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310
|||||||||||| || || || ||||| ||| | | ||| || ||||| |||| |||
Sbjct 2384170 CCTGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGG--ATGTTGTAGTCAGAAAGA 2384113
Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370
|| | |||||| || || || || || || || || || ||||| || ||||| ||
Sbjct 2384112 GTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATG 2384053
Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429
|| |||||||| || || || || || |||||| |||||| || | | || ||
Sbjct 2384052 CCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTG-GGCTCCACCTC 2383994
Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| |||| || || || || || || || ||||| || ||||||
Sbjct 2383993 CAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 2383948
>seq36
Length=17049061
Score = 93.3 bits (102), Expect = 3e-13
Identities = 156/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312
|||||||||||| || ||| |||||||| ||||| || ||||| |||| |||||
Sbjct 7362814 CCTGAGACGGAGAACCAGACGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 7362873
Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372
|||||| | || || || || || || || || ||||| ||||||||||| ||
Sbjct 7362874 GTGGCCATCTTCCACCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 7362933
Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431
|||||||| || || || || ||| |||||| |||||| || | | || || |
Sbjct 7362934 CTCTTTATCCTGGATCTTGGCCTTCACTTTCTCAATGGTATCAATG-GGCTCCACCTCCA 7362992
Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| ||| || || || || || || || | ||| || |||||
Sbjct 7362993 GGATAATGGTCTTGCCGGTCAGGGTCTTCATGAAGATCTGCAT 7363035
>seq148
Length=5416653
Score = 89.7 bits (98), Expect = 4e-12
Identities = 117/159 (74%), Gaps = 5/159 (3%)
Strand=Plus/Plus
Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378
|| ||| || || || || ||||| || ||||||||||||||||| ||||||||||| ||
Sbjct 991108 ATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTGGAATTCCTTCCTT 991167
Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAG-AGT 563435
||| || || || ||||| || || ||||| || | || || |||||| |
Sbjct 991168 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTATC--TGAGGGTTCAACTTCGAGTTAT 991225
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| ||||| || ||||| ||||| || ||||| |||||
Sbjct 991226 GATGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264
>seq38
Length=14582281
Score = 89.7 bits (98), Expect = 4e-12
Identities = 99/129 (77%), Gaps = 5/129 (4%)
Strand=Plus/Minus
Query 563265 TACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322
||||| || |||||| ||| | ||| |||||| ||||||| || |||| | ||||
Sbjct 13436897 TACAAAATAAAGGGTGAACTCTTATTG--AATATTTTAATCAGATAATGTTCATCCATCT 13436840
Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC-CTTCTTTATC 563381
|| |||||||| || |||||||| ||||||||||| |||| |||||| ||| ||||
Sbjct 13436839 TCCAGTTGTTTACCAGCAAAAATCTATCTTTGCTGATGAGGATGAATTCTTTTCCTTATA 13436780
Query 563382 TTGAATTTT 563390
||| || ||
Sbjct 13436779 TTGGATCTT 13436771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4025848300139570
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