Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq202 145 6e-29 seq10 116 3e-20 seq91 107 2e-17 seq55 105 5e-17 seq84 102 7e-16 seq147 93.3 3e-13 seq36 93.3 3e-13 seq148 89.7 4e-12 seq38 89.7 4e-12 >seq202 Length=1299801 Score = 145 bits (160), Expect = 6e-29 Identities = 366/551 (66%), Gaps = 8/551 (1%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || || | || ||||| ||| ||||| || || | || |||| || Sbjct 1282569 AGCCATCGGCATCGACCTGGGTACCACCTATTCCTGTGTGGGGGTGTTCCAGCATGGCAA 1282628 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || || ||||| || || || ||| | || || || || || | ||||| Sbjct 1282629 GGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTACGTGGCCTTCAC 1282688 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167 || || || | | |||| ||||| || || | || ||||| || || || Sbjct 1282689 CGACACCGAGCGGCTCATTGGAGATGCGGCTAAGAACCAGGTAGCCA-TG--AACCCGCA 1282745 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 |||||| | |||||||| |||||| | ||||| |||| ||||| ||| | ||| || Sbjct 1282746 GAATACTGTCTTTGATGCCAAACGTCTGATTGGCAGAAAATTTAACGATCCTGTTGTACA 1282805 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 | |||||||||| | |||||| || ||| | | |||| || || || | | ||| Sbjct 1282806 GTCAGATATGAAACTTTGGCCATTTCAAGTGATCAATGAAGGAGGGAAGCCCAA-AGTGA 1282864 Query 550288 AGCTA-CTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | || || |||| ||| || | || || | || || || ||||| Sbjct 1282865 TGGTGTCTTATAAAGGGGAGAAGAAAGCTTTCTACCCTGAGGAGATCTCTTCAATGGTAC 1282924 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | || |||||| | || || |||||| | || || || || |||| || | Sbjct 1282925 TGACCAAGATGAAAGAGACTGCAGAGGCTTTTTTGGGCCACACTGTCACCAATGCCGTGA 1282984 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || ||||| ||||| |||||||| ||||| || || || || ||||| || | Sbjct 1282985 TCACCGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTGTGA 1283044 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | || || || ||||| || | || ||||||||||| ||||| ||||| |||| |||| Sbjct 1283045 TCGCAGGCCTCAATGTGCTAAGAATCATCAATGAACCCACTGCAGCTGCCATTGCCTATG 1283104 Query 550527 GACTTGATAAA 550537 | | |||||| Sbjct 1283105 GTTTAGATAAA 1283115 >seq10 Length=26250347 Score = 116 bits (128), Expect = 3e-20 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||| |||||||| || || ||||| || || || || || Sbjct 23030752 GTTACAAATGCTGTGGTTACTGTCCCAGCATACTTCAACGACTCTCAGCGCCAGGCAACA 23030693 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||||| || |||||||| | ||||||||||| || |||||| Sbjct 23030692 AAAGATGCTGGAACCATTGCTGGTCTGAATGTTCTGAGAATTATCAATGAGCCAACTGCT 23030633 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 23030632 GCTGCTATTGCTTATGG 23030616 >seq91 Length=4965619 Score = 107 bits (118), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 563265 TACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 ||| |||||||| || ||| ||||| || ||||| |||| || |||| | |||| Sbjct 1585566 TACTAGATGAAGAGTGGACTCCTTTTGG--ATGTTGTAGTCAGATAAAGTTTGTCCATCT 1585623 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || || || || || ||||| || ||||||||||||||||| | |||||||| ||||| Sbjct 1585624 TCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTAGCATTCCTTCCTTATCC 1585683 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTT 563442 || || || ||||| || || ||||| | | | | | ||| || | ||| Sbjct 1585684 TGGATCTTGGCCTTTACATTTTCCATAGTATCCGAGGGTTCAACCTTGAGTGTGATGGTT 1585743 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| ||||||| |||||| ||||| Sbjct 1585744 TTCCCCGTAAGGGTTTTAATGAAAATCTGCAT 1585775 >seq55 Length=8345910 Score = 105 bits (116), Expect = 5e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||| ||||||||||| | ||||| ||||| || Sbjct 2142036 GTTACTCATGCAGTTGTCACTGTACCAGCCTATTTTAATGATGCCCAACGCCAAGCAACC 2141977 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||||| ||||| | | || |||||||| || Sbjct 2141976 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 2141924 >seq84 Length=7487594 Score = 102 bits (112), Expect = 7e-16 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 563265 TACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 ||| |||||||| || ||| |||| ||| ||| |||||| || ||| | | |||| Sbjct 757435 TACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGCAATCAGATAAAGTACATCCATCT 757492 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 | || || || || ||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 757493 CCCAGCTGCTTACCAGCAAAGTTTAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 757552 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTG-AGTACATTCGAGAGTAACAGT 563441 || || || ||||| || || ||||| | | | ||||| ||| | | || Sbjct 757553 TGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACATT-GAGTATGATGGT 757611 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || ||||| ||||| | |||||| | ||| Sbjct 757612 TTTCCCCGTAAGGGTTTTGATGAAAATCTTCAT 757644 >seq147 Length=2532799 Score = 93.3 bits (102), Expect = 3e-13 Identities = 159/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||||||||| || || || ||||| ||| | | ||| || ||||| |||| ||| Sbjct 2384170 CCTGAGACGGAGAACCAGGTGCAGGGTGGACTCTTTCTGG--ATGTTGTAGTCAGAAAGA 2384113 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || || || || || || || ||||| || ||||| || Sbjct 2384112 GTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATG 2384053 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 || |||||||| || || || || || |||||| |||||| || | | || || Sbjct 2384052 CCCTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTG-GGCTCCACCTC 2383994 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || |||| || || || || || || || ||||| || |||||| Sbjct 2383993 CAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 2383948 >seq36 Length=17049061 Score = 93.3 bits (102), Expect = 3e-13 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||||||||| || ||| |||||||| ||||| || ||||| |||| ||||| Sbjct 7362814 CCTGAGACGGAGAACCAGACGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 7362873 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 |||||| | || || || || || || || || ||||| ||||||||||| || Sbjct 7362874 GTGGCCATCTTCCACCTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 7362933 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 |||||||| || || || || ||| |||||| |||||| || | | || || | Sbjct 7362934 CTCTTTATCCTGGATCTTGGCCTTCACTTTCTCAATGGTATCAATG-GGCTCCACCTCCA 7362992 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||| || || || || || || || | ||| || ||||| Sbjct 7362993 GGATAATGGTCTTGCCGGTCAGGGTCTTCATGAAGATCTGCAT 7363035 >seq148 Length=5416653 Score = 89.7 bits (98), Expect = 4e-12 Identities = 117/159 (74%), Gaps = 5/159 (3%) Strand=Plus/Plus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 || ||| || || || || ||||| || ||||||||||||||||| ||||||||||| || Sbjct 991108 ATATTCCAGCTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGTGGAATTCCTTCCTT 991167 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAG-AGT 563435 ||| || || || ||||| || || ||||| || | || || |||||| | Sbjct 991168 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTATC--TGAGGGTTCAACTTCGAGTTAT 991225 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| || ||||| ||||| || ||||| ||||| Sbjct 991226 GATGGTTTTCCCCGTAAGGGTTTTGACAAAAATCTGCAT 991264 >seq38 Length=14582281 Score = 89.7 bits (98), Expect = 4e-12 Identities = 99/129 (77%), Gaps = 5/129 (4%) Strand=Plus/Minus Query 563265 TACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 ||||| || |||||| ||| | ||| |||||| ||||||| || |||| | |||| Sbjct 13436897 TACAAAATAAAGGGTGAACTCTTATTG--AATATTTTAATCAGATAATGTTCATCCATCT 13436840 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC-CTTCTTTATC 563381 || |||||||| || |||||||| ||||||||||| |||| |||||| ||| |||| Sbjct 13436839 TCCAGTTGTTTACCAGCAAAAATCTATCTTTGCTGATGAGGATGAATTCTTTTCCTTATA 13436780 Query 563382 TTGAATTTT 563390 ||| || || Sbjct 13436779 TTGGATCTT 13436771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025848300139570