Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_016437.1 Length=26340 Score E Sequences producing significant alignments: (Bits) Value seq4931 120 5e-23 >seq4931 Length=27746 Score = 120 bits (132), Expect = 5e-23 Identities = 203/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 15095 GATGTTATGGATAATGTTAATCCTTTTAATCATCATAAGAATAGAGGTTTGCAGTATAGA 15154 ||||| ||||| | |||||||| ||||||||||| | |||| |||||| ||| || Sbjct 16742 GATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTTGAGGTACAGG 16801 Query 15155 AGTCAGATTTTGGGTAATGGTAGAGTTTGTGATTTTCATATTCAGATACCTCAGAAATTT 15214 |||| | || || |||||| | | | |||||||||||| | || || || ||| Sbjct 16802 TCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCCGCAAAAGTTT 16861 Query 15215 TTTGCTATTAGGAATTTACTTTTGTTGCCAGGCACTTATAGTTATGAGTGGTGGTTTAGG 15274 ||||| ||| | ||| ||| || | || || | || ||||| || |||| ||||| Sbjct 16862 TTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATGGTCTTTTAGA 16921 Query 15275 AAAGATCCAAATTTGGTTTTGCAATCAAGTTTGGGTAATGATTTGAGAGCTGATGGAGCT 15334 |||||| ||| || ||||||| | | | || |||||| |||| | || ||||| Sbjct 16922 AAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGAGGACGGAGCG 16981 Query 15335 TCTATTACTTATTCTAGTATTAACCTTTATGCAAGCTTTTTTCCTATGGATCAT 15388 || | || | | || |||| ||| | ||| | || ||||| ||| |||| Sbjct 16982 TCAGTAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTCTCAT 17035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 84106153455277