Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq138 82.4 1e-10 >seq138 Length=3020394 Score = 82.4 bits (90), Expect = 1e-10 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||| || |||||||| || ||||||||| Sbjct 348482 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACGATAGCT 348423 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || |||||||| || || | || || | |||| | || || Sbjct 348422 GCCCACTTCTGGAAGGTTCCATCTCCTGCAGGTCTGGTCTCCACAAGCTCCATTTCCTGG 348363 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || ||||| || || || | ||| | | | || || || || || || ||| | Sbjct 348362 GTCTGGTCTTCCCCATCCCGTTGCCAGATCAGAGTGATCTCCGCGGGGTAGAAGCCCCGA 348303 Query 14358 GCCCAGCA 14365 |||||||| Sbjct 348302 GCCCAGCA 348295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628770389254280