Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dipodomys_20ordii_20[refseq_20GCF_5F000151885.1_202014-12-12] 65,193 sequences; 2,236,368,823 total letters Query= NC_016895.2 Length=31806 Score E Sequences producing significant alignments: (Bits) Value seq4931 659 0.0 >seq4931 Length=27746 Score = 659 bits (730), Expect = 0.0 Identities = 1372/2020 (68%), Gaps = 51/2020 (3%) Strand=Plus/Plus Query 17780 CTATATACTGAAGAGGTGGCCCTTCAAGCCCCAGACACCCACTTGGTTTATAAAG--TTG 17837 || ||| | ||||| ||| | ||||| ||||| || ||||| || || |||| | Sbjct 16040 CTTTATGCAGAAGATTTGGATATACAAGCTCCAGATACTCACTTAGTGTACAAAGCATCT 16099 Query 17838 CAGAGGCTGATGCTAAAGGCATTCCAGGTGTGGGTCAACAAGCTGCACCAAACAGGCCAA 17897 | ||| ||| |||| | || | | | ||| ||| || ||||||||||||| Sbjct 16100 CCCGGGC--ATGAAAAAGACTCTCTTGCCCTCGCTCAGCAAAGCGCGCCAAACAGGCCAA 16157 Query 17898 ATTACATTGCTTTTAGGGATAACTTCGTTGGGCTCATGTATTACAACAGCAATGGCAACC 17957 |||| || | ||||||||||||||| | ||| | |||| ||| ||||| ||| |||| Sbjct 16158 ATTATATAGGTTTTAGGGATAACTTTATCGGGTTAATGTTTTATAACAGTAATAGCAATT 16217 Query 17958 TTGGAGTACTAGCTGGACAATCCTCCCAACTAAATGCTGTTGTAGATTTGCAAGATAGAA 18017 | || ||| |||| || ||||| || || || |||||||| | || | ||||| |||| Sbjct 16218 TGGGTGTATTAGCCGGTCAATCGTCACAGCTTAATGCTGTCATCGACCTTCAAGACAGAA 16277 Query 18018 ATACTGAACTTTCATACCAACTTCTTCTGGATGCTTTGACTGATAGAACAAGGTATTTTT 18077 |||| ||| | ||||| || ||| | | ||| ||| |||||||| | |||| Sbjct 16278 ATACAGAATTGTCATATCAGCTTATGTTAGATAATTTACACGATAGAACTCGATATTACA 16337 Query 18078 CTATGTGGAATCAGGCTGTTGACAGCTATGACCATGATGTCAGAATAATAGATAATCACG 18137 |||||||||| || || || ||||| | || ||| |||| ||||| ||| | Sbjct 16338 GCTTGTGGAATCAAGCCGTGGATTCATATGATCCAGAGGTCCGAATCATAGACAATATTG 16397 Query 18138 GTGTAGAAGATGACATGCCCAATTACTGCTTCCCTCTAAGCGGAA-TGGGCGTAATGG-- 18194 | |||||||| || | || ||||| ||||| || || ||| | | || || Sbjct 16398 GAGTAGAAGACGAACTTCCAAATTATTGCTTTCCGTTATCTGGATGTTCTCCTATTGATT 16457 Query 18195 AGGCTGTGAGCAGT--ATGAAAGTGAACACGGCCAACAATGGTTTTGAAGCGAACAATAC 18252 | ||| | || || ||| || ||| | | | |||| ||||||| Sbjct 16458 ATACTG----CTGTTAATCAAAATGGACAAG-CAATCAAT------------AACAATA- 16499 Query 18253 TAACCAAGGTCCAGTTCAGCAAATAGGTTTTGGAAACGTTAACGCCATGGAAATTAACCT 18312 ||| | | |||| ||||| ||||| ||| | ||||||||| ||| | Sbjct 16500 --ACCCTGCGCAGGTTCTT---ATAGGCAAAGGAAATGTTGAATGCATGGAAATCAACAT 16554 Query 18313 AAATGCTAACCTGTTTAAAGGATTTCTATATTCAAACATAGCCCTTTACCTACCGGATGA 18372 | || ||||||| || ||||| ||||| || || || || || || || ||| | Sbjct 16555 AGCGGCCAACCTGTGGAAGAATTTTCTGTATTCTAATATCGCGCTGTATCTGCCCGATAA 16614 Query 18373 TTACAAATATACCCCACAAAATGTAACAGAGCCAGCTAACCATAA-CACCTAT--GCCTA 18429 | ||| || || |||||| | ||| || | || | | |||| || || Sbjct 16615 CTTTAAAACCACTCCCGCAAATGTGGTATTGCC-GC--AGGATCAGCGGCTATATGCTTA 16671 Query 18430 CATGAACATTAGGCTGCCGGCCGCTAACCTGGTAGATACTTTTGTCAATGTGGGTGCTCG 18489 |||||| | | | || |||| |||||||| || | |||| | || | | Sbjct 16672 CATGAATTCTCGCATTCCAGCCGGGGGTCTGGTAGAGGATTATATCAACATAGGAACCAG 16731 Query 18490 CTGGTCTCCTGATGTAATGGATACTGTCAACCCTTTCAATCATCACAGAAATGCCGGACT 18549 ||||| ||||| ||||| || || || || || ||||||||||||||| | || | Sbjct 16732 GTGGTCAATAGATGTGATGGACACGGTTAATCCATTTAATCATCACAGAAATACTGGTTT 16791 Query 18550 GCGATACCGGTCACAGCTGTTGGGCAATGGGCGCTATTGCTCGTTTCATATTCAGGTGCC 18609 | | ||| |||| ||||| || || ||||| |||||| || |||||||||||||| || Sbjct 16792 GAGGTACAGGTCTCAGCTATTAGGAAATGGTCGCTATGCTTCCTTTCATATTCAGGTTCC 16851 Query 18610 TCAAAAGTTTTTTGCAATCAAAAACCTCCTACTCCTTCCGGGGACGTACACGTACGAATG 18669 ||||||||||||||| | |||| | || || || ||||| |||||| |||||||| Sbjct 16852 GCAAAAGTTTTTTGCACTTAAAAGTTTGCTTCTGCTACCGGGATCGTACAGTTACGAATG 16911 Query 18670 GTCTTTCAGGAAGGATGTAAACATGATCCTGCAAAGCAGCCTGGGGAATGATCTCAGAGT 18729 |||||| || || |||||||||||||| |||| || | || || |||||||| || | Sbjct 16912 GTCTTTTAGAAAAGATGTAAACATGATTTTGCAGAGTACTCTTGGCAATGATCTGAGGGA 16971 Query 18730 AGACGGAGCCTCCATCACCATTCAGAGCATCAACCTGTATGCCAGCTTCTTCCCCATGGC 18789 |||||||| || | || || | ||||| | ||| | ||| | ||||| || ||| | Sbjct 16972 GGACGGAGCGTCAGTAACATTTGACAGCATTAGCCTATTTGCTACTTTCTTTCCGATGTC 17031 Query 18790 TCACAACACCGCTTCAACCCTGGAAGCCATGCTACGCAACGATGTCAACGACCAAACCTT 18849 ||| ||||| ||||| || |||||| | ||||| ||||| || || ||||| || |||| Sbjct 17032 TCATAACACTGCTTCTACTCTGGAAACTATGCTTCGCAATGAGGTTAACGATCAGTCCTT 17091 Query 18850 TGCCGATTATCTCT-CAGCGGCTAACATGCTGTACCCCATCCCTGCCAATACCACCAATC 18908 | ||| ||||| | |||| | ||||||||| || | || ||| | || || | Sbjct 17092 CGGCGACTATCTTTCCAGC-GTTAACATGCTTTATGCTATTCCTCCGCATCAAACAACAG 17150 Query 18909 TGCCCATTTCAATTCCAGCCAGAAACTGGGCAGGCTTCAGGGGATGGAGCTTTACCCGCA 18968 |||| || || |||||||| || || ||||| | ||| || || ||| ||||| | Sbjct 17151 TGCCTATCTCTATTCCAGCAAGGAATTGGGCGGCCTTTAGAGGTTGGGCATTTACTAGAC 17210 Query 18969 TTAAGCAAAAAGAGACACCAGCCCTGGGGTCTCCATTTGACCCCTACTTCACTTACTCGG 19028 | || ||| | || |||||| || | || ||| |||||||||| ||||| | ||||||| Sbjct 17211 TAAAACAACAGGAAACACCAACCATTGGCTCTGCATTTGACCCATACTTTAGGTACTCGG 17270 Query 19029 GCACTATGCCCTACTTGGATGGCACCTTTTACCTGAGTCATACTTTTAGAAGAGTCTCCA 19088 || | || || || | ||||| |||||||| | ||| ||| | |||| || ||| Sbjct 17271 GCTCAATCCCGTATTGGGATGCGACCTTTTATTTATCTCACACTATCAGAAAGGTGGCCA 17330 Query 19089 TTATGTTTGACTCTTCTGTTTCTTGGCCAGGAAACGACAGGCTGCTAACCCCGAATGAGT 19148 | |||||| ||||| || |||||| ||||| ||||| || ||| || ||||| | Sbjct 17331 TACAGTTTGATTCTTCAGTAAGTTGGCCTGGAAATGACAGACTTTTAATACCTAATGAAT 17390 Query 19149 TTGAAATTAAGAGAACAGTAGATGGGGAAGGCTACAACGTGGCTCAGTCCAATATGACTA 19208 || | || || ||| || || | ||||||||| ||| ||||| || || |||| Sbjct 17391 TTCACATAAAAAGAGAGGTGGACGCGGAAGGCTATAACACCTCTCAGAGCATAATTACTA 17450 Query 19209 AAGATTGGTTTTTGGTTCAAATGCTTGCCCACTACAACATTGGCTATCAGGGGTACCACC 19268 | ||||||| | || |||||||||| || |||||||| || || || || || | |||| Sbjct 17451 AGGATTGGTATATGATTCAAATGCTCGCTCACTACAATATCGGATACCAAGGTTTTCACC 17510 Query 19269 TTCCTGAATCTTACAAAGACAGGATGTACTCTTTCCTGAGAAATTTTGAGCCCATGTGTC 19328 | || | ||| ||||| || |||| || || | ||||||||||| ||||||||| Sbjct 17511 TACCCACAGATTATAAAGATAGATTGTATTCCTTTTTAAGAAATTTTGAACCCATGTGTA 17570 Query 19329 GGCAGCAGGTTGACACCCAGAAAG-CAGAAAACTACCAAGCTGTGACAATCAATAACCAA 19387 | || || || || | ||| | ||||| || ||| | || | | || | || Sbjct 17571 GACAAGTTGTGGA-TCCTGGTAAGACGGAAAAATATCAACCCGTTGCTCTTAAATATCAG 17629 Query 19388 CATAACAACTCCGGCTATGCCAGCGCGCTCTCCGCCTCCAACCCCCGGGAGGGACACCCC 19447 ||||| || || || | | | | | | | || || | || || || Sbjct 17630 CATAATAATTCAGGTTTTAAAAAC---CATTATGGACCCTTTGGGCGACAAGGCCATCCT 17686 Query 19448 TATCCCGCCAACTGGCCCTACCCGCTCATTGGAGCCACAGCGCTG--CCCTCAGTCACCC 19505 |||||| |||||||| | ||||||||| |||| |||| || | | | || | Sbjct 17687 TATCCCTGTAACTGGCCTTTCCCGCTCATCGGAG-AACAG-GCAGGTAAAACCATTACTC 17744 Query 19506 AGAAAAAGTTTCTCTGCGACCGAACCCTGTGGCGCATACCCTTCTCCTCCAACTTTATGT 19565 ||| ||| ||| | || ||| |||| |||||| | || || ||||||||||||||||||| Sbjct 17745 AGAGAAAATTTTTATGTGACAGAACACTGTGGAGGATTCCGTTCTCCTCCAACTTTATGT 17804 Query 19566 CCATGGGCACCCTCACCGACCTGGGCCAGAACCTCCTCTACTCCAACTCTGCCCATGCTC 19625 ||||||| || || || || ||||| || || | || || | || || || |||||| Sbjct 17805 CCATGGGAACACTAACAGATCTGGGACAAAATTTGCTATATGCAAATTCAGCTCATGCTT 17864 Query 19626 TCGACATGACCTTCGAGGTTGACGAGATGAATGAGCCCACTCTGTTGTACG-TTTTGTTT 19684 | |||||||| |||| || || ||| | || || ||| | | | | | | ||| Sbjct 17865 TAGACATGACAGTCGAAGTAGATTCAATGGAGGAACCAACT-TATCTCATGATGCTATTT 17923 Query 19685 GAAGTGTTCGACGTGGCCCGCGTCCACCAGCCACACCGGGGCGTGATTGAGGTCGTCTAC 19744 ||||| || ||| || | | || || ||||| || || || || || || || | || Sbjct 17924 GAAGTATTTGACATGTGCAGAGTGCATCAGCCTCAACGAGGTGTCATAGAAGTTATTTAT 17983 Query 19745 CTCAGAACCCCGTTCTCCGCCGGTAACGCTACAACCTAAA 19784 || |||||||| || || || |||||||| |||| |||| Sbjct 17984 CTAAGAACCCCCTTTTCGGCAGGTAACGCCGCAACATAAA 18023 Score = 152 bits (168), Expect = 1e-32 Identities = 819/1296 (63%), Gaps = 56/1296 (4%) Strand=Plus/Plus Query 5157 ttttttttGAGTCTCTTCTTACCTTTTTCCTCCATGAGCCTGTACCCCTCGCGGGTGGTG 5216 |||| ||| ||||| | ||||||||| |||||| || || | ||| || | Sbjct 5040 TTTTCTTTAAGTCTATGCTTACCTTTGGTCTCCATCAGTCTATGCCCTGTTTCTGTCACG 5099 Query 5217 AAGAGGCTGTCGGTGTCCCCGTAGACAGATTTCAAATTTCTCTTCTCCAGGGGGATTCCG 5276 || | ||||| || || ||||| | ||||| ||| |||| ||| || ||| Sbjct 5100 AACAAACTGTCAGTATCTCCGTAAATCGATTTTAAAATTCTGCGGTCCCAAGGTCGTCCC 5159 Query 5277 GCGTCGTCCGCGTACAGAAACTGGGCCCACTCGGAGACGAAGGCCCGCGTCCACGCGAGA 5336 || || | || | ||| | ||||| ||||| ||| || || ||||| |||||| Sbjct 5160 CAATCTTCAGAATATAAAAATTCCGCCCATTCGGAAGTGAAAGCGCGGGTCCAGGCGAGA 5219 Query 5337 ACAAATGACGCGATCTGGGACGGGTAGCGGTTGTTGGCAATGAGTGGCGTTGACTTCTCC 5396 |||||||||||||| ||||| ||||||||||| || | || |||| | | || || Sbjct 5220 ACAAATGACGCGATTTGGGATGGGTAGCGGTTATTATCTATTTGTGGGGAAGTATTTTCT 5279 Query 5397 AGGGTGTGCAAACAAAAGTCATCGTCCTCTGCAT-CTAGAAACGTGATTGGCTTGTAAGT 5455 | | || | || | || | || || | | | ||||| ||||||||||| | | Sbjct 5280 ATCATTTGAAGGCATAGGTGAGAATCGTCAGATTGCAAGAAA-GTGATTGGCTTAAACTT 5338 Query 5456 GTATG--ACGTCACGCTAGTGGGGGA-----CATAAAAGGGGTCT---CCGGGTGG---- 5501 |||| |||| | || ||| || |||| || | |||| |||| || Sbjct 5339 ATATGTCACGTGA-TCT-GTGTCAGAATTTGCATATAAAGTGTCTATGGCGGGAGGGGCC 5396 Query 5502 ------------GGGTCCCCATCATTGGCGACGGCGGTGTGGGTCAGCGCCACGCTGGGA 5549 || ||| |||||| || ||| || |||| ||| | || | | Sbjct 5397 TTTTTAGTTGGCGGTTCCGCATCATCGG----AGCGCGGTACGTCATCGCGAAGC--GAA 5450 Query 5550 TCAGGTGGGTACGCTACGACAAATTCTGGCATGATTTCTGCGCACAGGTTGTCTGTTTCT 5609 | |||| ||| || |||||||| || | |||| || || ||||| ||| Sbjct 5451 GCCGGTGAGTAACAGGCGGTGAATTCTGGGATAACACGGGCGCTTAGATTATCTGTCTCT 5510 Query 5610 ATGTAAGAAGAAGATTTGACCACGAACGC---GCCCGTGGAGATGTCGTGGGCGGTCTCG 5666 |||||| | | | | || || || || ||| ||||| | | | || Sbjct 5511 ATGTAACAGGTGG---CGCTTACAAAAGCTTTACCACTGGCTATGTCTTTCATGATGTC- 5566 Query 5667 GCATCT-ATTTGGTCAGAAAACACCGTCTTTTTGTTGTCAAGCTTGGTGGCGAAGGAGCC 5725 | | | ||||| || | ||||| | ||||| || || | | ||||||| ||||| || Sbjct 5567 ACTTGTAATTTGATCCGGAAACAGTATTTTTTTATTATCTAACCTGGTGGCAAAGGAACC 5626 Query 5726 GTAGAGGGCGTTGGAGAGCAGCTTGGCTATGCTGCGCATGGTTTGGTTTTTATTTTTGTC 5785 ||| || ||||| || | ||| || || ||||| ||| || ||| | ||||| || Sbjct 5627 GTACAGTGCGTTTGACAACAGTTTAGCGATGCTTCGCTGTGTGCTGTTGTGGTTTTTTTC 5686 Query 5786 TGCCTGCTCTTTGGCCTGGATGTTTAGCTGC-ACGTACTCGCGCGCGAGACACTTCCACT 5844 || |||||| ||| || |||| || ||||| || | || | || ||||||| Sbjct 5687 CGCGGCCTCTTTTGCCGCTAT-ATTAGTGGCTACGTATTCTCTTGCCACGCAATTCCACT 5745 Query 5845 CGGGGAAGACGGTGGCGCGGGCGTCGGGCACAAAGCGCACCTTCCAGCCTCTGTTGTGTA 5904 || || || | || | || || || || | | |||||| |||| || || | Sbjct 5746 GCTCAAATACTGTAACTCGCTCATCTGGGACCAACCTAATCTTCCATCCTCGATTATGCA 5805 Query 5905 GGGTGATGACGTCAATGGAGGTGGCCACCTCCCCGCGGAGGGGCTCGTTGGTCCAGCACA 5964 || ||| | || ||||| ||| || || || | | || || |||||||| | Sbjct 5806 AAGTAATGGCATCGATGGACGTGCATACTTCGCCTCTTAAATTTTCATTTGTCCAGCAAA 5865 Query 5965 GTCTTCCTCCCTTCCGCGAGCAGAAgggggggAGGACATCTAAAAACTCATCTGCCGGGG 6024 | | || || || | ||| || || || || | |||||||| | || || || |||| Sbjct 5866 GACGCCCGCCTTTTCTCGAACAAAATGGCGGTAAAACATCTAAGTATTCTTCGGCAGGGG 5925 Query 6025 GGTCTGCATCTATGGTGAGGATGGCGGGCAGGAGCTCGGGGTCAAAGTAGCTGATCTGTG 6084 ||| ||||| || | ||||| || | || | |||||||| ||| || | || Sbjct 5926 CGTCAGCATCAATTACAACAATGGCCGGTAACAGGGCAGGGTCAAAATAGGAAAT-TTTG 5984 Query 6085 CCTCCGTTTGCA-----TCTTCAACTCGTACCGCCGCACCGCCAGGGCTCTTTCAAAGGG 6139 | ||| ||||| | || || ||| | | |||| | ||| |||||||| Sbjct 5985 TCACCGGTTGCAAAGCGTTTTGAA----TACTGATAGAGAGCCAAGTTTCTGTCAAAGGG 6040 Query 6140 ATTGAGGGGCGGGCCCGCGGGGAAGGGATGCGTGAGCGCACTGGCATACATGCCGCAGAT 6199 ||| || || ||||| ||| | ||||||||| | || ||||||||||| ||| | || Sbjct 6041 ATTAAGTGGTGGGCCAAAGGGCATGGGATGCGTTAATGCGCTGGCATACATTCCGGAAAT 6100 Query 6200 GTCATAGACAAACACGGGCTCGTCCAGCAGTCCGATAAAGGTGGGATAACAGCGCCCCCC 6259 ||||| ||| | | || || || | | || || | ||||| || || || ||||| Sbjct 6101 ATCATAAACATAAATAGGTTCCTCAAAAACACCTATGTAAGTGGGGTAGCACCGTCCCCC 6160 Query 6260 GCGGATGCTGGCGCGCACATACTCATACATCTCATTGGAAGGGGCCAACAGTGTGGTGCC 6319 | |||||| | | ||| | ||||| || || | || ||||||| || || | Sbjct 6161 TCTGATGCTTTCTCTTACAAAATCATAAATGTCGTGTGACGGGGCCAGAAGAGTATTCGA 6220 Query 6320 CAGGTGGCTTTGGTTGGGCTTTTCGGCCCTAAAGAGGATCTGCTTAAAGAGGGCGTGTGA 6379 || || || | ||||| | | |||| | | |||||||| | || || Sbjct 6221 CAAATGATGTTTTTCTAACTTTTGAGTCTTAAACACCAGTTGCTTAAAAATTGCAAAAGA 6280 Query 6380 GTTGGAGCTAATGGTAGGCCGCTGAAATACATTGAA 6415 || |||||||| || || |||||||| ||||| || Sbjct 6281 ATTTGAGCTAATTGTTGGACGCTGAAAAACATTAAA 6316 Score = 86.0 bits (94), Expect = 1e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 8012 GCTATGACCCGGCGGTTGATGGTCTGAATTTGGTTGTTCTGGGAAAAGACGACGGGCCCC 8071 ||||| || | || || ||| ||||||||| |||||||||| || | || || ||| Sbjct 7883 GCTATCACTCTCCGATTTATGTTCTGAATTTCTCTGTTCTGGGAGAATATTACCGGACCC 7942 Query 8072 GTCATTTTGAACCTAAAAGACAGTTCCATAGAATCAATTTCTGTATCATT 8121 |||| |||||| || ||||| | ||| | |||||||||||| ||||||| Sbjct 7943 GTCACTTTGAATCTGAAAGATAATTCAACAGAATCAATTTCCATATCATT 7992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101578900053488